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PMC:2664230 / 24572-24738 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T8369 80-93 Negative_regulation denotes downregulates
T8370 94-99 Protein denotes TNF-α
T8371 100-110 Gene_expression denotes production
T8372 144-155 Regulation denotes independent true
R6828 T8369 T8372 themeOf downregulates,independent
R6829 T8370 T8371 themeOf TNF-α,production
R6830 T8371 T8369 themeOf production,downregulates

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9621 0-2 IN denotes In
T9622 3-10 NN denotes summary
T9623 10-11 , denotes ,
T9624 12-14 PRP denotes we
T9625 15-19 VBP denotes have
T9626 20-32 VBN denotes demonstrated
T9627 33-37 IN denotes that
T9628 38-41 NNP denotes PDE
T9629 42-52 NN denotes inhibition
T9630 53-55 IN denotes of
T9631 56-61 JJ denotes human
T9632 62-73 NN denotes mononuclear
T9633 74-79 NNS denotes cells
T9634 80-93 VBZ denotes downregulates
T9635 94-99 JJ denotes TNF-α
T9636 100-110 NN denotes production
T9637 110-111 , denotes ,
T9638 112-114 IN denotes at
T9639 115-120 JJS denotes least
T9640 121-123 IN denotes in
T9641 124-128 NN denotes part
T9642 128-129 , denotes ,
T9643 130-137 IN denotes through
T9644 138-139 DT denotes a
T9645 140-155 JJ denotes PKA-independent
T9646 156-165 NN denotes mechanism
T9647 165-166 . denotes .
R8042 T9621 T9626 prep In,demonstrated
R8043 T9622 T9621 pobj summary,In
R8044 T9623 T9626 punct ",",demonstrated
R8045 T9624 T9626 nsubj we,demonstrated
R8046 T9625 T9626 aux have,demonstrated
R8047 T9626 T9626 ROOT demonstrated,demonstrated
R8048 T9627 T9634 mark that,downregulates
R8049 T9628 T9629 compound PDE,inhibition
R8050 T9629 T9634 nsubj inhibition,downregulates
R8051 T9630 T9629 prep of,inhibition
R8052 T9631 T9633 amod human,cells
R8053 T9632 T9633 compound mononuclear,cells
R8054 T9633 T9630 pobj cells,of
R8055 T9634 T9626 ccomp downregulates,demonstrated
R8056 T9635 T9636 compound TNF-α,production
R8057 T9636 T9634 dobj production,downregulates
R8058 T9637 T9643 punct ",",through
R8059 T9638 T9639 advmod at,least
R8060 T9639 T9640 advmod least,in
R8061 T9640 T9643 prep in,through
R8062 T9641 T9640 pobj part,in
R8063 T9642 T9643 punct ",",through
R8064 T9643 T9634 prep through,downregulates
R8065 T9644 T9646 det a,mechanism
R8066 T9645 T9646 amod PKA-independent,mechanism
R8067 T9646 T9643 pobj mechanism,through
R8068 T9647 T9626 punct .,demonstrated

GO-BP

Id Subject Object Predicate Lexical cue
T9876 38-41 http://purl.obolibrary.org/obo/GO_0004114 denotes PDE
T9881 94-110 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T9887 94-110 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T9903 140-143 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA

GO-MF

Id Subject Object Predicate Lexical cue
T10032 38-41 http://purl.obolibrary.org/obo/GO_0004114 denotes PDE
T10044 140-143 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA

GO-CC

Id Subject Object Predicate Lexical cue
T10068 74-79 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T10080 140-143 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA

sentences

Id Subject Object Predicate Lexical cue
T8408 0-166 Sentence denotes In summary, we have demonstrated that PDE inhibition of human mononuclear cells downregulates TNF-α production, at least in part, through a PKA-independent mechanism.
T164 0-166 Sentence denotes In summary, we have demonstrated that PDE inhibition of human mononuclear cells downregulates TNF-α production, at least in part, through a PKA-independent mechanism.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T10652 80-93 Negative_regulation denotes downregulates
T10653 94-99 Protein denotes TNF-α
T10654 100-110 Gene_expression denotes production
T10655 144-155 Regulation denotes independent true
R8515 T10652 T10655 themeOf downregulates,independent
R8516 T10653 T10654 themeOf TNF-α,production
R8517 T10654 T10652 themeOf production,downregulates

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10295 38-41 Protein denotes PDE
T10296 94-99 Protein denotes TNF-α
T10297 140-143 Protein denotes PKA
T10298 42-52 Negative_regulation denotes inhibition
T10299 100-110 Gene_expression denotes production
T10300 80-93 Negative_regulation denotes downregulates
R8312 T10295 T10298 themeOf PDE,inhibition
R8315 T10296 T10299 themeOf TNF-α,production
R8316 T10298 T10300 causeOf inhibition,downregulates
R8318 T10299 T10300 themeOf production,downregulates

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9810 94-97 P01375 denotes TNF
T9811 94-99 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T8268 80-93 Positive_regulation denotes downregulates
T8269 94-99 Protein denotes TNF-α
T8270 100-110 Gene_expression denotes production
R6770 T8269 T8270 themeOf TNF-α,production
R6771 T8270 T8268 themeOf production,downregulates