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PMC:2664230 / 24091-24290 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T8366 163-173 Negative_regulation denotes inhibiting
T8367 174-179 Protein denotes TNF-α
T8368 185-198 Transcription denotes transcription
R6826 T8367 T8368 themeOf TNF-α,transcription
R6827 T8368 T8366 themeOf transcription,inhibiting

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9539 0-5 VBN denotes Given
T9540 6-11 DT denotes these
T9541 12-25 NNS denotes relationships
T9542 25-26 , denotes ,
T9543 27-29 PRP denotes it
T9544 30-32 VBZ denotes is
T9545 33-44 JJ denotes conceivable
T9546 45-49 IN denotes that
T9547 50-53 NNP denotes PTX
T9548 54-57 MD denotes may
T9549 58-63 VB denotes exert
T9550 64-68 DT denotes some
T9551 69-71 IN denotes of
T9552 72-75 PRP$ denotes its
T9553 76-93 JJ denotes anti-inflammatory
T9554 94-101 NNS denotes actions
T9555 102-104 IN denotes by
T9556 105-114 VBG denotes affecting
T9557 115-119 JJ denotes AP-1
T9558 120-130 NN denotes activation
T9559 131-134 CC denotes and
T9560 135-143 VBG denotes favoring
T9561 144-148 NNP denotes CREB
T9562 149-156 JJ denotes binding
T9563 156-157 , denotes ,
T9564 158-162 RB denotes thus
T9565 163-173 VBG denotes inhibiting
T9566 174-179 JJ denotes TNF-α
T9567 180-184 NN denotes gene
T9568 185-198 NN denotes transcription
T9569 198-199 . denotes .
R7960 T9539 T9544 prep Given,is
R7961 T9540 T9541 det these,relationships
R7962 T9541 T9539 pobj relationships,Given
R7963 T9542 T9544 punct ",",is
R7964 T9543 T9544 nsubj it,is
R7965 T9544 T9544 ROOT is,is
R7966 T9545 T9544 acomp conceivable,is
R7967 T9546 T9549 mark that,exert
R7968 T9547 T9549 nsubj PTX,exert
R7969 T9548 T9549 aux may,exert
R7970 T9549 T9544 ccomp exert,is
R7971 T9550 T9549 dobj some,exert
R7972 T9551 T9550 prep of,some
R7973 T9552 T9554 poss its,actions
R7974 T9553 T9554 amod anti-inflammatory,actions
R7975 T9554 T9551 pobj actions,of
R7976 T9555 T9554 prep by,actions
R7977 T9556 T9555 pcomp affecting,by
R7978 T9557 T9558 amod AP-1,activation
R7979 T9558 T9556 dobj activation,affecting
R7980 T9559 T9556 cc and,affecting
R7981 T9560 T9556 conj favoring,affecting
R7982 T9561 T9560 dobj CREB,favoring
R7983 T9562 T9560 conj binding,favoring
R7984 T9563 T9549 punct ",",exert
R7985 T9564 T9565 advmod thus,inhibiting
R7986 T9565 T9549 advcl inhibiting,exert
R7987 T9566 T9568 amod TNF-α,transcription
R7988 T9567 T9568 compound gene,transcription
R7989 T9568 T9565 dobj transcription,inhibiting
R7990 T9569 T9544 punct .,is

GO-BP

Id Subject Object Predicate Lexical cue
T9863 185-198 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T10058 149-156 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T8405 0-199 Sentence denotes Given these relationships, it is conceivable that PTX may exert some of its anti-inflammatory actions by affecting AP-1 activation and favoring CREB binding, thus inhibiting TNF-α gene transcription.
T161 0-199 Sentence denotes Given these relationships, it is conceivable that PTX may exert some of its anti-inflammatory actions by affecting AP-1 activation and favoring CREB binding, thus inhibiting TNF-α gene transcription.

events-check-again

Id Subject Object Predicate Lexical cue
T10649 163-173 Negative_regulation denotes inhibiting
T10650 174-179 Protein denotes TNF-α
T10651 185-198 Transcription denotes transcription
R8512 T10650 T10651 themeOf TNF-α,transcription
R8513 T10651 T10649 themeOf transcription,inhibiting

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10281 50-53 Protein denotes PTX
T10282 115-119 Protein denotes AP-1
T10283 144-148 Protein denotes CREB
T10284 174-184 Protein denotes TNF-α gene
T10285 120-130 Positive_regulation denotes activation
T10286 149-156 Binding denotes binding
T10287 185-198 Transcription denotes transcription
T10288 105-114 Regulation denotes affecting
T10289 135-143 Positive_regulation denotes favoring
T10290 163-173 Negative_regulation denotes inhibiting
R8299 T10281 T10288 causeOf PTX,affecting
R8301 T10281 T10290 causeOf PTX,inhibiting
R8302 T10282 T10285 themeOf AP-1,activation
R8304 T10283 T10286 themeOf CREB,binding
R8306 T10284 T10287 themeOf TNF-α gene,transcription
R8307 T10285 T10288 themeOf activation,affecting
R8309 T10286 T10289 themeOf binding,favoring
R8310 T10287 T10290 themeOf transcription,inhibiting

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9794 115-119 P05412 denotes AP-1
T9795 144-148 O43889 denotes CREB
T9796 144-148 P15336 denotes CREB
T9797 144-148 P16220 denotes CREB
T9798 144-148 P18848 denotes CREB
T9799 144-148 Q02930 denotes CREB
T9800 144-148 Q8TEY5 denotes CREB
T9801 174-177 P01375 denotes TNF
T9802 174-179 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T8265 163-173 Negative_regulation denotes inhibiting
T8266 174-179 Protein denotes TNF-α
T8267 185-198 Transcription denotes transcription
R6768 T8266 T8267 themeOf TNF-α,transcription
R6769 T8267 T8265 themeOf transcription,inhibiting