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PMC:2664230 / 16623-16821 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T7598 71-77 Regulation denotes result true
T7599 97-107 Regulation denotes modulation
T7600 111-116 Protein denotes TNF-α
T7601 117-127 Gene_expression denotes production
R6267 T7599 T7598 themeOf modulation,result
R6268 T7600 T7601 themeOf TNF-α,production
R6269 T7601 T7599 themeOf production,modulation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7836 0-14 NN denotes Pre-incubation
T7837 15-17 IN denotes of
T7838 18-23 NN denotes cells
T7839 24-28 IN denotes with
T7840 29-32 NN denotes H89
T7841 33-38 JJ denotes prior
T7842 39-41 TO denotes to
T7843 42-45 NN denotes LPS
T7844 46-49 CC denotes and
T7845 50-53 NN denotes PTX
T7846 54-62 NN denotes exposure
T7847 63-66 VB denotes did
T7848 67-70 RB denotes not
T7849 71-77 VB denotes result
T7850 78-80 IN denotes in
T7851 81-84 DT denotes any
T7852 85-96 JJ denotes significant
T7853 97-107 NN denotes modulation
T7854 108-110 IN denotes of
T7855 111-116 NN denotes TNF-α
T7856 117-127 NN denotes production
T7857 128-132 WRB denotes when
T7858 133-141 VB denotes compared
T7859 142-144 TO denotes to
T7860 145-149 DT denotes that
T7861 150-162 VB denotes demonstrated
T7862 163-167 IN denotes with
T7863 168-171 NN denotes PTX
T7864 172-177 RB denotes alone
T7865 178-179 -LRB- denotes (
T7866 179-180 NN denotes P
T7867 181-182 SYM denotes =
T7868 183-186 CD denotes 0.2
T7869 186-187 -COLON- denotes ;
T7870 188-194 NN denotes Figure
T7871 195-196 CD denotes 5
T7872 196-197 -RRB- denotes )
R6496 T7836 T7837 arg1Of Pre-incubation,of
R6497 T7836 T7839 arg1Of Pre-incubation,with
R6498 T7836 T7847 arg1Of Pre-incubation,did
R6499 T7836 T7849 arg1Of Pre-incubation,result
R6500 T7838 T7837 arg2Of cells,of
R6501 T7840 T7839 arg2Of H89,with
R6502 T7840 T7841 arg1Of H89,prior
R6503 T7841 T7842 arg1Of prior,to
R6504 T7843 T7844 arg1Of LPS,and
R6505 T7845 T7844 arg2Of PTX,and
R6506 T7846 T7842 arg2Of exposure,to
R6507 T7846 T7843 arg1Of exposure,LPS
R6508 T7846 T7845 arg1Of exposure,PTX
R6509 T7849 T7847 arg2Of result,did
R6510 T7849 T7848 arg1Of result,not
R6511 T7849 T7850 arg1Of result,in
R6512 T7853 T7850 arg2Of modulation,in
R6513 T7853 T7851 arg1Of modulation,any
R6514 T7853 T7852 arg1Of modulation,significant
R6515 T7853 T7854 arg1Of modulation,of
R6516 T7853 T7858 arg1Of modulation,compared
R6517 T7853 T7861 arg2Of modulation,demonstrated
R6518 T7856 T7854 arg2Of production,of
R6519 T7856 T7855 arg1Of production,TNF-α
R6520 T7858 T7857 arg2Of compared,when
R6521 T7858 T7859 arg1Of compared,to
R6522 T7860 T7859 arg2Of that,to
R6523 T7861 T7857 arg1Of demonstrated,when
R6524 T7861 T7862 arg1Of demonstrated,with
R6525 T7863 T7862 arg2Of PTX,with
R6526 T7863 T7864 arg1Of PTX,alone
R6527 T7864 T7865 arg1Of alone,(
R6528 T7866 T7865 arg2Of P,(
R6529 T7866 T7867 arg1Of P,=
R6530 T7866 T7868 arg1Of P,0.2
R6531 T7866 T7869 arg1Of P,;
R6532 T7870 T7869 arg2Of Figure,;
R6533 T7870 T7871 arg1Of Figure,5
R6534 T7872 T7865 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7694 0-14 NN denotes Pre-incubation
T7695 15-17 IN denotes of
T7696 18-23 NNS denotes cells
T7697 24-28 IN denotes with
T7698 29-32 NNP denotes H89
T7699 33-38 RB denotes prior
T7700 39-41 TO denotes to
T7701 42-45 NNP denotes LPS
T7702 46-49 CC denotes and
T7703 50-53 NNP denotes PTX
T7704 54-62 NN denotes exposure
T7705 63-66 VBD denotes did
T7706 67-70 RB denotes not
T7707 71-77 VB denotes result
T7708 78-80 IN denotes in
T7709 81-84 DT denotes any
T7710 85-96 JJ denotes significant
T7711 97-107 NN denotes modulation
T7712 108-110 IN denotes of
T7713 111-116 JJ denotes TNF-α
T7714 117-127 NN denotes production
T7715 128-132 WRB denotes when
T7716 133-141 VBN denotes compared
T7717 142-144 TO denotes to
T7718 145-149 DT denotes that
T7719 150-162 VBD denotes demonstrated
T7720 163-167 IN denotes with
T7721 168-171 NNP denotes PTX
T7722 172-177 RB denotes alone
T7723 178-179 -LRB- denotes (
T7724 179-180 NNP denotes P
T7725 181-182 SYM denotes =
T7726 183-186 CD denotes 0.2
T7727 186-187 : denotes ;
T7728 188-194 NN denotes Figure
T7729 195-196 CD denotes 5
T7730 196-197 -RRB- denotes )
T7731 197-198 . denotes .
R6356 T7694 T7707 nsubj Pre-incubation,result
R6357 T7695 T7694 prep of,Pre-incubation
R6358 T7696 T7695 pobj cells,of
R6359 T7697 T7696 prep with,cells
R6360 T7698 T7697 pobj H89,with
R6361 T7699 T7707 advmod prior,result
R6362 T7700 T7699 prep to,prior
R6363 T7701 T7700 pobj LPS,to
R6364 T7702 T7701 cc and,LPS
R6365 T7703 T7704 compound PTX,exposure
R6366 T7704 T7701 conj exposure,LPS
R6367 T7705 T7707 aux did,result
R6368 T7706 T7707 neg not,result
R6369 T7707 T7707 ROOT result,result
R6370 T7708 T7707 prep in,result
R6371 T7709 T7711 det any,modulation
R6372 T7710 T7711 amod significant,modulation
R6373 T7711 T7708 pobj modulation,in
R6374 T7712 T7711 prep of,modulation
R6375 T7713 T7714 compound TNF-α,production
R6376 T7714 T7712 pobj production,of
R6377 T7715 T7716 advmod when,compared
R6378 T7716 T7707 advcl compared,result
R6379 T7717 T7716 prep to,compared
R6380 T7718 T7717 pobj that,to
R6381 T7719 T7718 acl demonstrated,that
R6382 T7720 T7719 prep with,demonstrated
R6383 T7721 T7720 pobj PTX,with
R6384 T7722 T7721 advmod alone,PTX
R6385 T7723 T7721 punct (,PTX
R6386 T7724 T7721 appos P,PTX
R6387 T7725 T7726 punct =,0.2
R6388 T7726 T7724 nummod 0.2,P
R6389 T7727 T7728 punct ;,Figure
R6390 T7728 T7724 appos Figure,P
R6391 T7729 T7728 nummod 5,Figure
R6392 T7730 T7728 punct ),Figure
R6393 T7731 T7707 punct .,result

GO-BP

Id Subject Object Predicate Lexical cue
T7912 111-127 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T7916 111-127 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production

GO-CC

Id Subject Object Predicate Lexical cue
T7955 18-23 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7609 0-198 Sentence denotes Pre-incubation of cells with H89 prior to LPS and PTX exposure did not result in any significant modulation of TNF-α production when compared to that demonstrated with PTX alone (P = 0.2; Figure 5).
T128 0-198 Sentence denotes Pre-incubation of cells with H89 prior to LPS and PTX exposure did not result in any significant modulation of TNF-α production when compared to that demonstrated with PTX alone (P = 0.2; Figure 5).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T7969 71-77 Regulation denotes result true
T7970 97-107 Regulation denotes modulation
T7971 111-116 Protein denotes TNF-α
T7972 117-127 Gene_expression denotes production
R6580 T7970 T7969 themeOf modulation,result
R6581 T7971 T7972 themeOf TNF-α,production
R6582 T7972 T7970 themeOf production,modulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7992 50-53 Protein denotes PTX
T7993 111-116 Protein denotes TNF-α
T7994 168-171 Protein denotes PTX
T7995 117-127 Gene_expression denotes production
T7996 97-107 Regulation denotes modulation
R6593 T7993 T7995 themeOf TNF-α,production
R6594 T7995 T7996 themeOf production,modulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7901 111-114 P01375 denotes TNF
T7902 111-116 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T7580 97-107 Regulation denotes modulation
T7581 111-116 Protein denotes TNF-α
T7582 117-127 Gene_expression denotes production
R6254 T7581 T7582 themeOf TNF-α,production
R6255 T7582 T7580 themeOf production,modulation