> top > docs > PMC:2664230 > spans > 16177-16965 > annotations

PMC:2664230 / 16177-16965 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T7586 0-6 Regulation denotes Effect true
T7587 17-22 Protein denotes TNF-α
T7588 23-33 Gene_expression denotes production
T7589 34-52 Regulation denotes in the presence of
T7590 72-76 Regulation denotes role
T7591 91-98 Positive_regulation denotes induced
T7592 99-113 Negative_regulation denotes downregulation
T7593 117-122 Protein denotes TNF-α
T7594 123-133 Gene_expression denotes production
T7595 312-320 Positive_regulation denotes resulted
T7596 326-335 Negative_regulation denotes reduction
T7597 339-344 Protein denotes TNF-α
T7598 517-523 Regulation denotes result true
T7599 543-553 Regulation denotes modulation
T7600 557-562 Protein denotes TNF-α
T7601 563-573 Gene_expression denotes production
T7602 672-686 Negative_regulation denotes downregulation
T7603 690-695 Protein denotes TNF-α
T7604 696-706 Gene_expression denotes production
T7605 776-787 Regulation denotes independent true
R6258 T7586 T7589 themeOf Effect,in the presence of
R6259 T7587 T7588 themeOf TNF-α,production
R6260 T7588 T7586 themeOf production,Effect
R6261 T7591 T7590 themeOf induced,role
R6262 T7592 T7591 themeOf downregulation,induced
R6263 T7593 T7594 themeOf TNF-α,production
R6264 T7594 T7592 themeOf production,downregulation
R6265 T7596 T7595 themeOf reduction,resulted
R6266 T7597 T7596 themeOf TNF-α,reduction
R6267 T7599 T7598 themeOf modulation,result
R6268 T7600 T7601 themeOf TNF-α,production
R6269 T7601 T7599 themeOf production,modulation
R6270 T7602 T7605 themeOf downregulation,independent
R6271 T7603 T7604 themeOf TNF-α,production
R6272 T7604 T7602 themeOf production,downregulation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7755 0-6 NN denotes Effect
T7756 7-9 IN denotes of
T7757 10-13 NN denotes PTX
T7758 14-16 IN denotes on
T7759 17-22 NN denotes TNF-α
T7760 23-33 NN denotes production
T7761 34-36 IN denotes in
T7762 37-40 DT denotes the
T7763 41-49 NN denotes presence
T7764 50-52 IN denotes of
T7765 53-56 NN denotes PKA
T7766 57-67 NN denotes inhibition
T7767 68-71 DT denotes The
T7768 72-76 NN denotes role
T7769 77-79 IN denotes of
T7770 80-83 NN denotes PKA
T7771 84-86 IN denotes in
T7772 87-98 JJ denotes PTX-induced
T7773 99-113 NN denotes downregulation
T7774 114-116 IN denotes of
T7775 117-122 NN denotes TNF-α
T7776 123-133 NN denotes production
T7777 134-136 IN denotes in
T7778 137-151 JJ denotes LPS-stimulated
T7779 152-163 JJ denotes mononuclear
T7780 164-169 NN denotes cells
T7781 170-173 VB denotes was
T7782 174-182 VB denotes assessed
T7783 183-185 IN denotes by
T7784 186-194 VB denotes treating
T7785 195-206 JJ denotes mononuclear
T7786 207-212 NN denotes cells
T7787 213-217 IN denotes with
T7788 218-221 NN denotes H89
T7789 221-222 -COMMA- denotes ,
T7790 223-224 DT denotes a
T7791 225-228 NN denotes PKA
T7792 229-238 NN denotes inhibitor
T7793 238-239 -COMMA- denotes ,
T7794 240-245 JJ denotes prior
T7795 246-248 TO denotes to
T7796 249-252 NN denotes LPS
T7797 253-256 CC denotes and
T7798 257-260 NN denotes PTX
T7799 261-269 NN denotes exposure
T7800 271-274 DT denotes The
T7801 275-283 NN denotes addition
T7802 284-287 NN denotes PTX
T7803 288-290 TO denotes to
T7804 291-305 JJ denotes LPS-stimulated
T7805 306-311 NN denotes cells
T7806 312-320 VB denotes resulted
T7807 321-323 IN denotes in
T7808 324-325 DT denotes a
T7809 326-335 NN denotes reduction
T7810 336-338 IN denotes in
T7811 339-344 NN denotes TNF-α
T7812 344-345 -COMMA- denotes ,
T7813 346-353 JJ denotes similar
T7814 354-356 TO denotes to
T7815 357-361 DT denotes that
T7816 362-370 VB denotes observed
T7817 371-373 IN denotes in
T7818 374-377 PRP-DOLLAR- denotes our
T7819 378-386 JJ denotes previous
T7820 387-398 NN denotes experiments
T7821 399-400 -LRB- denotes (
T7822 400-403 CD denotes 529
T7823 404-409 NN denotes pg/mL
T7824 410-411 IN denotes ±
T7825 412-415 CD denotes 112
T7826 416-419 IN denotes vs.
T7827 420-422 CD denotes 37
T7828 423-428 NN denotes pg/mL
T7829 429-430 NN denotes ±
T7830 431-433 CD denotes 10
T7831 433-434 -COLON- denotes ;
T7832 435-436 NN denotes P
T7833 437-438 SYM denotes <
T7834 439-443 CD denotes 0.01
T7835 443-444 -RRB- denotes )
T7836 446-460 NN denotes Pre-incubation
T7837 461-463 IN denotes of
T7838 464-469 NN denotes cells
T7839 470-474 IN denotes with
T7840 475-478 NN denotes H89
T7841 479-484 JJ denotes prior
T7842 485-487 TO denotes to
T7843 488-491 NN denotes LPS
T7844 492-495 CC denotes and
T7845 496-499 NN denotes PTX
T7846 500-508 NN denotes exposure
T7847 509-512 VB denotes did
T7848 513-516 RB denotes not
T7849 517-523 VB denotes result
T7850 524-526 IN denotes in
T7851 527-530 DT denotes any
T7852 531-542 JJ denotes significant
T7853 543-553 NN denotes modulation
T7854 554-556 IN denotes of
T7855 557-562 NN denotes TNF-α
T7856 563-573 NN denotes production
T7857 574-578 WRB denotes when
T7858 579-587 VB denotes compared
T7859 588-590 TO denotes to
T7860 591-595 DT denotes that
T7861 596-608 VB denotes demonstrated
T7862 609-613 IN denotes with
T7863 614-617 NN denotes PTX
T7864 618-623 RB denotes alone
T7865 624-625 -LRB- denotes (
T7866 625-626 NN denotes P
T7867 627-628 SYM denotes =
T7868 629-632 CD denotes 0.2
T7869 632-633 -COLON- denotes ;
T7870 634-640 NN denotes Figure
T7871 641-642 CD denotes 5
T7872 642-643 -RRB- denotes )
T7873 645-650 DT denotes These
T7874 651-658 NN denotes results
T7875 659-666 VB denotes suggest
T7876 667-671 IN denotes that
T7877 672-686 NN denotes downregulation
T7878 687-689 IN denotes of
T7879 690-695 NN denotes TNF-α
T7880 696-706 NN denotes production
T7881 707-709 IN denotes by
T7882 710-713 NN denotes PTX
T7883 714-716 IN denotes in
T7884 717-731 JJ denotes LPS-stimulated
T7885 732-743 JJ denotes mononuclear
T7886 744-749 NN denotes cells
T7887 750-752 VB denotes is
T7888 752-753 -COMMA- denotes ,
T7889 754-756 IN denotes at
T7890 757-762 JJ denotes least
T7891 763-765 IN denotes in
T7892 766-770 NN denotes part
T7893 770-771 -COMMA- denotes ,
T7894 772-787 JJ denotes PKA-independent
R6417 T7755 T7756 arg1Of Effect,of
R6418 T7755 T7758 arg1Of Effect,on
R6419 T7757 T7756 arg2Of PTX,of
R6420 T7760 T7758 arg2Of production,on
R6421 T7760 T7759 arg1Of production,TNF-α
R6422 T7760 T7761 arg1Of production,in
R6423 T7763 T7761 arg2Of presence,in
R6424 T7763 T7762 arg1Of presence,the
R6425 T7763 T7764 arg1Of presence,of
R6426 T7766 T7764 arg2Of inhibition,of
R6427 T7766 T7765 arg1Of inhibition,PKA
R6428 T7768 T7767 arg1Of role,The
R6429 T7768 T7769 arg1Of role,of
R6430 T7768 T7771 arg1Of role,in
R6431 T7768 T7777 arg1Of role,in
R6432 T7768 T7781 arg1Of role,was
R6433 T7768 T7782 arg2Of role,assessed
R6434 T7770 T7769 arg2Of PKA,of
R6435 T7773 T7771 arg2Of downregulation,in
R6436 T7773 T7772 arg1Of downregulation,PTX-induced
R6437 T7773 T7774 arg1Of downregulation,of
R6438 T7776 T7774 arg2Of production,of
R6439 T7776 T7775 arg1Of production,TNF-α
R6440 T7780 T7777 arg2Of cells,in
R6441 T7780 T7778 arg1Of cells,LPS-stimulated
R6442 T7780 T7779 arg1Of cells,mononuclear
R6443 T7782 T7781 arg2Of assessed,was
R6444 T7782 T7783 arg1Of assessed,by
R6445 T7784 T7783 arg2Of treating,by
R6446 T7786 T7784 arg2Of cells,treating
R6447 T7786 T7785 arg1Of cells,mononuclear
R6448 T7786 T7787 arg1Of cells,with
R6449 T7786 T7793 arg1Of cells,","
R6450 T7786 T7794 arg1Of cells,prior
R6451 T7788 T7787 arg2Of H89,with
R6452 T7788 T7789 arg1Of H89,","
R6453 T7792 T7789 arg2Of inhibitor,","
R6454 T7792 T7790 arg1Of inhibitor,a
R6455 T7792 T7791 arg1Of inhibitor,PKA
R6456 T7794 T7795 arg1Of prior,to
R6457 T7796 T7797 arg1Of LPS,and
R6458 T7797 T7795 arg2Of and,to
R6459 T7799 T7797 arg2Of exposure,and
R6460 T7799 T7798 arg1Of exposure,PTX
R6461 T7802 T7800 arg1Of PTX,The
R6462 T7802 T7801 arg1Of PTX,addition
R6463 T7802 T7803 arg1Of PTX,to
R6464 T7802 T7806 arg1Of PTX,resulted
R6465 T7805 T7803 arg2Of cells,to
R6466 T7805 T7804 arg1Of cells,LPS-stimulated
R6467 T7806 T7807 arg1Of resulted,in
R6468 T7809 T7807 arg2Of reduction,in
R6469 T7809 T7808 arg1Of reduction,a
R6470 T7809 T7810 arg1Of reduction,in
R6471 T7809 T7812 arg1Of reduction,","
R6472 T7809 T7813 arg1Of reduction,similar
R6473 T7809 T7821 arg1Of reduction,(
R6474 T7811 T7810 arg2Of TNF-α,in
R6475 T7813 T7814 arg1Of similar,to
R6476 T7815 T7814 arg2Of that,to
R6477 T7815 T7816 arg2Of that,observed
R6478 T7816 T7817 arg1Of observed,in
R6479 T7820 T7817 arg2Of experiments,in
R6480 T7820 T7818 arg1Of experiments,our
R6481 T7820 T7819 arg1Of experiments,previous
R6482 T7823 T7822 arg1Of pg/mL,529
R6483 T7824 T7823 arg1Of ±,pg/mL
R6484 T7827 T7826 arg1Of 37,vs.
R6485 T7829 T7821 arg2Of ±,(
R6486 T7829 T7824 arg1Of ±,±
R6487 T7829 T7825 arg1Of ±,112
R6488 T7829 T7827 arg1Of ±,37
R6489 T7829 T7828 arg1Of ±,pg/mL
R6490 T7829 T7830 arg1Of ±,10
R6491 T7829 T7831 arg1Of ±,;
R6492 T7832 T7831 arg2Of P,;
R6493 T7832 T7833 arg1Of P,<
R6494 T7832 T7834 arg1Of P,0.01
R6495 T7835 T7821 arg3Of ),(
R6496 T7836 T7837 arg1Of Pre-incubation,of
R6497 T7836 T7839 arg1Of Pre-incubation,with
R6498 T7836 T7847 arg1Of Pre-incubation,did
R6499 T7836 T7849 arg1Of Pre-incubation,result
R6500 T7838 T7837 arg2Of cells,of
R6501 T7840 T7839 arg2Of H89,with
R6502 T7840 T7841 arg1Of H89,prior
R6503 T7841 T7842 arg1Of prior,to
R6504 T7843 T7844 arg1Of LPS,and
R6505 T7845 T7844 arg2Of PTX,and
R6506 T7846 T7842 arg2Of exposure,to
R6507 T7846 T7843 arg1Of exposure,LPS
R6508 T7846 T7845 arg1Of exposure,PTX
R6509 T7849 T7847 arg2Of result,did
R6510 T7849 T7848 arg1Of result,not
R6511 T7849 T7850 arg1Of result,in
R6512 T7853 T7850 arg2Of modulation,in
R6513 T7853 T7851 arg1Of modulation,any
R6514 T7853 T7852 arg1Of modulation,significant
R6515 T7853 T7854 arg1Of modulation,of
R6516 T7853 T7858 arg1Of modulation,compared
R6517 T7853 T7861 arg2Of modulation,demonstrated
R6518 T7856 T7854 arg2Of production,of
R6519 T7856 T7855 arg1Of production,TNF-α
R6520 T7858 T7857 arg2Of compared,when
R6521 T7858 T7859 arg1Of compared,to
R6522 T7860 T7859 arg2Of that,to
R6523 T7861 T7857 arg1Of demonstrated,when
R6524 T7861 T7862 arg1Of demonstrated,with
R6525 T7863 T7862 arg2Of PTX,with
R6526 T7863 T7864 arg1Of PTX,alone
R6527 T7864 T7865 arg1Of alone,(
R6528 T7866 T7865 arg2Of P,(
R6529 T7866 T7867 arg1Of P,=
R6530 T7866 T7868 arg1Of P,0.2
R6531 T7866 T7869 arg1Of P,;
R6532 T7870 T7869 arg2Of Figure,;
R6533 T7870 T7871 arg1Of Figure,5
R6534 T7872 T7865 arg3Of ),(
R6535 T7874 T7873 arg1Of results,These
R6536 T7874 T7875 arg1Of results,suggest
R6537 T7877 T7878 arg1Of downregulation,of
R6538 T7877 T7883 arg1Of downregulation,in
R6539 T7877 T7887 arg1Of downregulation,is
R6540 T7880 T7878 arg2Of production,of
R6541 T7880 T7879 arg1Of production,TNF-α
R6542 T7880 T7881 arg1Of production,by
R6543 T7882 T7881 arg2Of PTX,by
R6544 T7886 T7883 arg2Of cells,in
R6545 T7886 T7884 arg1Of cells,LPS-stimulated
R6546 T7886 T7885 arg1Of cells,mononuclear
R6547 T7887 T7875 arg2Of is,suggest
R6548 T7887 T7876 arg1Of is,that
R6549 T7887 T7888 arg1Of is,","
R6550 T7887 T7891 arg1Of is,in
R6551 T7887 T7893 arg1Of is,","
R6552 T7890 T7889 arg1Of least,at
R6553 T7891 T7890 arg1Of in,least
R6554 T7892 T7891 arg2Of part,in
R6555 T7894 T7887 arg2Of PKA-independent,is

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7611 0-6 NN denotes Effect
T7612 7-9 IN denotes of
T7613 10-13 NNP denotes PTX
T7614 14-16 IN denotes on
T7615 17-22 JJ denotes TNF-α
T7616 23-33 NN denotes production
T7617 34-36 IN denotes in
T7618 37-40 DT denotes the
T7619 41-49 NN denotes presence
T7620 50-52 IN denotes of
T7621 53-56 NNP denotes PKA
T7622 57-67 NN denotes inhibition
T7623 68-71 DT denotes The
T7624 72-76 NN denotes role
T7625 77-79 IN denotes of
T7626 80-83 NNP denotes PKA
T7627 84-86 IN denotes in
T7628 87-98 JJ denotes PTX-induced
T7629 99-113 NN denotes downregulation
T7630 114-116 IN denotes of
T7631 117-122 JJ denotes TNF-α
T7632 123-133 NN denotes production
T7633 134-136 IN denotes in
T7634 137-151 JJ denotes LPS-stimulated
T7635 152-163 NN denotes mononuclear
T7636 164-169 NNS denotes cells
T7637 170-173 VBD denotes was
T7638 174-182 VBN denotes assessed
T7639 183-185 IN denotes by
T7640 186-194 VBG denotes treating
T7641 195-206 NN denotes mononuclear
T7642 207-212 NNS denotes cells
T7643 213-217 IN denotes with
T7644 218-221 NNP denotes H89
T7645 221-222 , denotes ,
T7646 223-224 DT denotes a
T7647 225-228 NNP denotes PKA
T7648 229-238 NN denotes inhibitor
T7649 238-239 , denotes ,
T7650 240-245 RB denotes prior
T7651 246-248 TO denotes to
T7652 249-252 NNP denotes LPS
T7653 253-256 CC denotes and
T7654 257-260 NNP denotes PTX
T7655 261-269 NN denotes exposure
T7656 269-270 . denotes .
T7657 271-274 DT denotes The
T7658 275-283 NN denotes addition
T7659 284-287 NNP denotes PTX
T7660 288-290 TO denotes to
T7661 291-305 JJ denotes LPS-stimulated
T7662 306-311 NNS denotes cells
T7663 312-320 VBD denotes resulted
T7664 321-323 IN denotes in
T7665 324-325 DT denotes a
T7666 326-335 NN denotes reduction
T7667 336-338 IN denotes in
T7668 339-344 NNP denotes TNF-α
T7669 344-345 , denotes ,
T7670 346-353 JJ denotes similar
T7671 354-356 TO denotes to
T7672 357-361 DT denotes that
T7673 362-370 VBN denotes observed
T7674 371-373 IN denotes in
T7675 374-377 PRP$ denotes our
T7676 378-386 JJ denotes previous
T7677 387-398 NNS denotes experiments
T7678 399-400 -LRB- denotes (
T7679 400-403 CD denotes 529
T7680 404-409 JJ denotes pg/mL
T7681 410-411 NN denotes ±
T7682 412-415 CD denotes 112
T7683 416-419 FW denotes vs.
T7684 420-422 CD denotes 37
T7685 423-428 NNP denotes pg/mL
T7686 429-430 CD denotes ±
T7687 431-433 CD denotes 10
T7688 433-434 : denotes ;
T7689 435-436 NNP denotes P
T7690 437-438 NNP denotes <
T7691 439-443 CD denotes 0.01
T7692 443-444 -RRB- denotes )
T7693 444-445 . denotes .
T7694 446-460 NN denotes Pre-incubation
T7695 461-463 IN denotes of
T7696 464-469 NNS denotes cells
T7697 470-474 IN denotes with
T7698 475-478 NNP denotes H89
T7699 479-484 RB denotes prior
T7700 485-487 TO denotes to
T7701 488-491 NNP denotes LPS
T7702 492-495 CC denotes and
T7703 496-499 NNP denotes PTX
T7704 500-508 NN denotes exposure
T7705 509-512 VBD denotes did
T7706 513-516 RB denotes not
T7707 517-523 VB denotes result
T7708 524-526 IN denotes in
T7709 527-530 DT denotes any
T7710 531-542 JJ denotes significant
T7711 543-553 NN denotes modulation
T7712 554-556 IN denotes of
T7713 557-562 JJ denotes TNF-α
T7714 563-573 NN denotes production
T7715 574-578 WRB denotes when
T7716 579-587 VBN denotes compared
T7717 588-590 TO denotes to
T7718 591-595 DT denotes that
T7719 596-608 VBD denotes demonstrated
T7720 609-613 IN denotes with
T7721 614-617 NNP denotes PTX
T7722 618-623 RB denotes alone
T7723 624-625 -LRB- denotes (
T7724 625-626 NNP denotes P
T7725 627-628 SYM denotes =
T7726 629-632 CD denotes 0.2
T7727 632-633 : denotes ;
T7728 634-640 NN denotes Figure
T7729 641-642 CD denotes 5
T7730 642-643 -RRB- denotes )
T7731 643-644 . denotes .
T7732 645-650 DT denotes These
T7733 651-658 NNS denotes results
T7734 659-666 VBP denotes suggest
T7735 667-671 IN denotes that
T7736 672-686 NN denotes downregulation
T7737 687-689 IN denotes of
T7738 690-695 JJ denotes TNF-α
T7739 696-706 NN denotes production
T7740 707-709 IN denotes by
T7741 710-713 NNP denotes PTX
T7742 714-716 IN denotes in
T7743 717-731 JJ denotes LPS-stimulated
T7744 732-743 NN denotes mononuclear
T7745 744-749 NNS denotes cells
T7746 750-752 VBZ denotes is
T7747 752-753 , denotes ,
T7748 754-756 IN denotes at
T7749 757-762 JJS denotes least
T7750 763-765 IN denotes in
T7751 766-770 NN denotes part
T7752 770-771 , denotes ,
T7753 772-787 JJ denotes PKA-independent
T7754 787-788 . denotes .
R6273 T7611 T7611 ROOT Effect,Effect
R6274 T7612 T7611 prep of,Effect
R6275 T7613 T7612 pobj PTX,of
R6276 T7614 T7611 prep on,Effect
R6277 T7615 T7616 amod TNF-α,production
R6278 T7616 T7614 pobj production,on
R6279 T7617 T7616 prep in,production
R6280 T7618 T7619 det the,presence
R6281 T7619 T7617 pobj presence,in
R6282 T7620 T7619 prep of,presence
R6283 T7621 T7622 compound PKA,inhibition
R6284 T7622 T7620 pobj inhibition,of
R6285 T7623 T7624 det The,role
R6286 T7624 T7638 nsubjpass role,assessed
R6287 T7625 T7624 prep of,role
R6288 T7626 T7625 pobj PKA,of
R6289 T7627 T7624 prep in,role
R6290 T7628 T7629 amod PTX-induced,downregulation
R6291 T7629 T7627 pobj downregulation,in
R6292 T7630 T7629 prep of,downregulation
R6293 T7631 T7632 amod TNF-α,production
R6294 T7632 T7630 pobj production,of
R6295 T7633 T7632 prep in,production
R6296 T7634 T7636 amod LPS-stimulated,cells
R6297 T7635 T7636 compound mononuclear,cells
R6298 T7636 T7633 pobj cells,in
R6299 T7637 T7638 auxpass was,assessed
R6300 T7638 T7638 ROOT assessed,assessed
R6301 T7639 T7638 prep by,assessed
R6302 T7640 T7639 pcomp treating,by
R6303 T7641 T7642 compound mononuclear,cells
R6304 T7642 T7640 dobj cells,treating
R6305 T7643 T7640 prep with,treating
R6306 T7644 T7643 pobj H89,with
R6307 T7645 T7644 punct ",",H89
R6308 T7646 T7648 det a,inhibitor
R6309 T7647 T7648 compound PKA,inhibitor
R6310 T7648 T7644 appos inhibitor,H89
R6311 T7649 T7644 punct ",",H89
R6312 T7650 T7640 advmod prior,treating
R6313 T7651 T7650 prep to,prior
R6314 T7652 T7651 pobj LPS,to
R6315 T7653 T7652 cc and,LPS
R6316 T7654 T7655 compound PTX,exposure
R6317 T7655 T7652 conj exposure,LPS
R6318 T7656 T7638 punct .,assessed
R6319 T7657 T7658 det The,addition
R6320 T7658 T7659 nsubj addition,PTX
R6321 T7659 T7663 nsubj PTX,resulted
R6322 T7660 T7659 prep to,PTX
R6323 T7661 T7662 amod LPS-stimulated,cells
R6324 T7662 T7660 pobj cells,to
R6325 T7663 T7663 ROOT resulted,resulted
R6326 T7664 T7663 prep in,resulted
R6327 T7665 T7666 det a,reduction
R6328 T7666 T7664 pobj reduction,in
R6329 T7667 T7666 prep in,reduction
R6330 T7668 T7667 pobj TNF-α,in
R6331 T7669 T7668 punct ",",TNF-α
R6332 T7670 T7666 amod similar,reduction
R6333 T7671 T7673 aux to,observed
R6334 T7672 T7673 nsubj that,observed
R6335 T7673 T7666 relcl observed,reduction
R6336 T7674 T7673 prep in,observed
R6337 T7675 T7677 poss our,experiments
R6338 T7676 T7677 amod previous,experiments
R6339 T7677 T7674 pobj experiments,in
R6340 T7678 T7677 punct (,experiments
R6341 T7679 T7684 quantmod 529,37
R6342 T7680 T7683 nmod pg/mL,vs.
R6343 T7681 T7683 nmod ±,vs.
R6344 T7682 T7681 nummod 112,±
R6345 T7683 T7684 nmod vs.,37
R6346 T7684 T7687 nummod 37,10
R6347 T7685 T7686 compound pg/mL,±
R6348 T7686 T7687 nummod ±,10
R6349 T7687 T7677 appos 10,experiments
R6350 T7688 T7677 punct ;,experiments
R6351 T7689 T7690 compound P,<
R6352 T7690 T7677 appos <,experiments
R6353 T7691 T7690 nummod 0.01,<
R6354 T7692 T7677 punct ),experiments
R6355 T7693 T7663 punct .,resulted
R6356 T7694 T7707 nsubj Pre-incubation,result
R6357 T7695 T7694 prep of,Pre-incubation
R6358 T7696 T7695 pobj cells,of
R6359 T7697 T7696 prep with,cells
R6360 T7698 T7697 pobj H89,with
R6361 T7699 T7707 advmod prior,result
R6362 T7700 T7699 prep to,prior
R6363 T7701 T7700 pobj LPS,to
R6364 T7702 T7701 cc and,LPS
R6365 T7703 T7704 compound PTX,exposure
R6366 T7704 T7701 conj exposure,LPS
R6367 T7705 T7707 aux did,result
R6368 T7706 T7707 neg not,result
R6369 T7707 T7707 ROOT result,result
R6370 T7708 T7707 prep in,result
R6371 T7709 T7711 det any,modulation
R6372 T7710 T7711 amod significant,modulation
R6373 T7711 T7708 pobj modulation,in
R6374 T7712 T7711 prep of,modulation
R6375 T7713 T7714 compound TNF-α,production
R6376 T7714 T7712 pobj production,of
R6377 T7715 T7716 advmod when,compared
R6378 T7716 T7707 advcl compared,result
R6379 T7717 T7716 prep to,compared
R6380 T7718 T7717 pobj that,to
R6381 T7719 T7718 acl demonstrated,that
R6382 T7720 T7719 prep with,demonstrated
R6383 T7721 T7720 pobj PTX,with
R6384 T7722 T7721 advmod alone,PTX
R6385 T7723 T7721 punct (,PTX
R6386 T7724 T7721 appos P,PTX
R6387 T7725 T7726 punct =,0.2
R6388 T7726 T7724 nummod 0.2,P
R6389 T7727 T7728 punct ;,Figure
R6390 T7728 T7724 appos Figure,P
R6391 T7729 T7728 nummod 5,Figure
R6392 T7730 T7728 punct ),Figure
R6393 T7731 T7707 punct .,result
R6394 T7732 T7733 det These,results
R6395 T7733 T7734 nsubj results,suggest
R6396 T7734 T7734 ROOT suggest,suggest
R6397 T7735 T7746 mark that,is
R6398 T7736 T7746 nsubj downregulation,is
R6399 T7737 T7736 prep of,downregulation
R6400 T7738 T7739 compound TNF-α,production
R6401 T7739 T7737 pobj production,of
R6402 T7740 T7739 prep by,production
R6403 T7741 T7740 pobj PTX,by
R6404 T7742 T7736 prep in,downregulation
R6405 T7743 T7745 amod LPS-stimulated,cells
R6406 T7744 T7745 compound mononuclear,cells
R6407 T7745 T7742 pobj cells,in
R6408 T7746 T7734 ccomp is,suggest
R6409 T7747 T7746 punct ",",is
R6410 T7748 T7749 advmod at,least
R6411 T7749 T7750 advmod least,in
R6412 T7750 T7746 prep in,is
R6413 T7751 T7750 pobj part,in
R6414 T7752 T7753 punct ",",PKA-independent
R6415 T7753 T7746 acomp PKA-independent,is
R6416 T7754 T7734 punct .,suggest

GO-BP

Id Subject Object Predicate Lexical cue
T7910 17-33 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T7911 117-133 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T7912 557-573 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T7913 690-706 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T7914 17-33 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T7915 117-133 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T7916 557-573 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T7917 690-706 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T7918 53-56 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7919 80-83 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7920 225-228 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7921 772-775 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7922 99-122 http://purl.obolibrary.org/obo/GO_1904468 denotes downregulation of TNF-α
T7923 672-695 http://purl.obolibrary.org/obo/GO_1904468 denotes downregulation of TNF-α

GO-MF

Id Subject Object Predicate Lexical cue
T7944 53-56 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7945 80-83 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7946 225-228 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA
T7947 772-775 http://purl.obolibrary.org/obo/GO_0004691 denotes PKA

GO-CC

Id Subject Object Predicate Lexical cue
T7948 53-56 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T7949 80-83 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T7950 225-228 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T7951 772-775 http://purl.obolibrary.org/obo/GO_0005952 denotes PKA
T7952 164-169 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7953 207-212 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7954 306-311 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7955 464-469 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7956 744-749 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7606 0-67 Sentence denotes Effect of PTX on TNF-α production in the presence of PKA inhibition
T7607 68-270 Sentence denotes The role of PKA in PTX-induced downregulation of TNF-α production in LPS-stimulated mononuclear cells was assessed by treating mononuclear cells with H89, a PKA inhibitor, prior to LPS and PTX exposure.
T7608 271-445 Sentence denotes The addition PTX to LPS-stimulated cells resulted in a reduction in TNF-α, similar to that observed in our previous experiments (529 pg/mL ± 112 vs. 37 pg/mL ± 10; P < 0.01).
T7609 446-644 Sentence denotes Pre-incubation of cells with H89 prior to LPS and PTX exposure did not result in any significant modulation of TNF-α production when compared to that demonstrated with PTX alone (P = 0.2; Figure 5).
T7610 645-788 Sentence denotes These results suggest that downregulation of TNF-α production by PTX in LPS-stimulated mononuclear cells is, at least in part, PKA-independent.
T125 0-67 Sentence denotes Effect of PTX on TNF-α production in the presence of PKA inhibition
T126 68-270 Sentence denotes The role of PKA in PTX-induced downregulation of TNF-α production in LPS-stimulated mononuclear cells was assessed by treating mononuclear cells with H89, a PKA inhibitor, prior to LPS and PTX exposure.
T127 271-445 Sentence denotes The addition PTX to LPS-stimulated cells resulted in a reduction in TNF-α, similar to that observed in our previous experiments (529 pg/mL ± 112 vs. 37 pg/mL ± 10; P < 0.01).
T128 446-644 Sentence denotes Pre-incubation of cells with H89 prior to LPS and PTX exposure did not result in any significant modulation of TNF-α production when compared to that demonstrated with PTX alone (P = 0.2; Figure 5).
T129 645-788 Sentence denotes These results suggest that downregulation of TNF-α production by PTX in LPS-stimulated mononuclear cells is, at least in part, PKA-independent.

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T7957 0-6 Regulation denotes Effect true
T7958 17-22 Protein denotes TNF-α
T7959 23-33 Gene_expression denotes production
T7960 34-52 Regulation denotes in the presence of
T7961 72-76 Regulation denotes role
T7962 91-98 Positive_regulation denotes induced
T7963 99-113 Negative_regulation denotes downregulation
T7964 117-122 Protein denotes TNF-α
T7965 123-133 Gene_expression denotes production
T7966 312-320 Positive_regulation denotes resulted
T7967 326-335 Negative_regulation denotes reduction
T7968 339-344 Protein denotes TNF-α
T7969 517-523 Regulation denotes result true
T7970 543-553 Regulation denotes modulation
T7971 557-562 Protein denotes TNF-α
T7972 563-573 Gene_expression denotes production
T7973 672-686 Negative_regulation denotes downregulation
T7974 690-695 Protein denotes TNF-α
T7975 696-706 Gene_expression denotes production
T7976 776-787 Regulation denotes independent true
R6571 T7957 T7960 themeOf Effect,in the presence of
R6572 T7958 T7959 themeOf TNF-α,production
R6573 T7959 T7957 themeOf production,Effect
R6574 T7962 T7961 themeOf induced,role
R6575 T7963 T7962 themeOf downregulation,induced
R6576 T7964 T7965 themeOf TNF-α,production
R6577 T7965 T7963 themeOf production,downregulation
R6578 T7967 T7966 themeOf reduction,resulted
R6579 T7968 T7967 themeOf TNF-α,reduction
R6580 T7970 T7969 themeOf modulation,result
R6581 T7971 T7972 themeOf TNF-α,production
R6582 T7972 T7970 themeOf production,modulation
R6583 T7973 T7976 themeOf downregulation,independent
R6584 T7974 T7975 themeOf TNF-α,production
R6585 T7975 T7973 themeOf production,downregulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7977 10-13 Protein denotes PTX
T7978 17-22 Protein denotes TNF-α
T7979 53-56 Protein denotes PKA
T7980 23-33 Gene_expression denotes production
T7981 57-67 Negative_regulation denotes inhibition
T7982 0-6 Regulation denotes Effect
T7983 80-83 Protein denotes PKA
T7984 87-90 Protein denotes PTX
T7985 117-122 Protein denotes TNF-α
T7986 225-228 Protein denotes PKA
T7987 257-260 Protein denotes PTX
T7988 123-133 Gene_expression denotes production
T7989 229-238 Negative_regulation denotes inhibitor
T7990 339-344 Protein denotes TNF-α
T7991 326-335 Negative_regulation denotes reduction
T7992 496-499 Protein denotes PTX
T7993 557-562 Protein denotes TNF-α
T7994 614-617 Protein denotes PTX
T7995 563-573 Gene_expression denotes production
T7996 543-553 Regulation denotes modulation
T7997 690-695 Protein denotes TNF-α
T7998 710-713 Protein denotes PTX
T7999 772-775 Protein denotes PKA
T8000 696-706 Gene_expression denotes production
T8001 672-686 Negative_regulation denotes downregulation
T8002 776-787 Negative_regulation denotes independent
R6586 T7977 T7982 causeOf PTX,Effect
R6587 T7978 T7980 themeOf TNF-α,production
R6588 T7979 T7981 themeOf PKA,inhibition
R6589 T7980 T7982 themeOf production,Effect
R6590 T7985 T7988 themeOf TNF-α,production
R6591 T7986 T7989 themeOf PKA,inhibitor
R6592 T7990 T7991 themeOf TNF-α,reduction
R6593 T7993 T7995 themeOf TNF-α,production
R6594 T7995 T7996 themeOf production,modulation
R6595 T7997 T8000 themeOf TNF-α,production
R6596 T7998 T8001 causeOf PTX,downregulation
R6597 T7999 T8002 causeOf PKA,independent
R6598 T8000 T8001 themeOf production,downregulation
R6599 T8001 T8002 themeOf downregulation,independent

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7895 17-20 P01375 denotes TNF
T7896 17-22 P01375 denotes TNF-α
T7897 117-120 P01375 denotes TNF
T7898 117-122 P01375 denotes TNF-α
T7899 339-342 P01375 denotes TNF
T7900 339-344 P01375 denotes TNF-α
T7901 557-560 P01375 denotes TNF
T7902 557-562 P01375 denotes TNF-α
T7903 690-693 P01375 denotes TNF
T7904 690-695 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T7570 0-6 Regulation denotes Effect true
T7571 17-22 Protein denotes TNF-α
T7572 23-33 Gene_expression denotes production
T7573 91-98 Positive_regulation denotes induced
T7574 99-113 Negative_regulation denotes downregulation
T7575 117-122 Protein denotes TNF-α
T7576 123-133 Gene_expression denotes production
T7577 312-320 Positive_regulation denotes resulted
T7578 326-335 Negative_regulation denotes reduction
T7579 339-344 Protein denotes TNF-α true
T7580 543-553 Regulation denotes modulation
T7581 557-562 Protein denotes TNF-α
T7582 563-573 Gene_expression denotes production
T7583 672-686 Negative_regulation denotes downregulation
T7584 690-695 Protein denotes TNF-α true
T7585 696-706 Gene_expression denotes production
R6247 T7571 T7572 themeOf TNF-α,production
R6248 T7572 T7570 themeOf production,Effect
R6249 T7574 T7573 themeOf downregulation,induced
R6250 T7575 T7576 themeOf TNF-α,production
R6251 T7576 T7574 themeOf production,downregulation
R6252 T7578 T7577 themeOf reduction,resulted
R6253 T7579 T7578 themeOf TNF-α,reduction
R6254 T7581 T7582 themeOf TNF-α,production
R6255 T7582 T7580 themeOf production,modulation
R6256 T7584 T7585 themeOf TNF-α,production
R6257 T7585 T7583 themeOf production,downregulation