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PMC:2664230 / 155-404 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T57 49-55 Regulation denotes effect true
T58 139-166 Protein denotes tumor necrosis factor-alpha
T59 168-173 Protein denotes TNF-α
T60 175-185 Gene_expression denotes production
R750 T58 T60 themeOf tumor necrosis factor-alpha,production
R751 T60 T57 themeOf production,effect

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T470 0-3 DT denotes The
T471 4-13 NN denotes objective
T472 14-16 IN denotes of
T473 17-21 DT denotes this
T474 22-27 NN denotes study
T475 28-31 VB denotes was
T476 32-34 TO denotes to
T477 35-44 VB denotes determine
T478 45-48 DT denotes the
T479 49-55 NN denotes effect
T480 56-58 IN denotes of
T481 59-70 JJ denotes nonspecific
T482 71-88 NN denotes phosphodiesterase
T483 89-99 NN denotes inhibition
T484 100-102 IN denotes on
T485 103-116 NN denotes transcription
T486 117-123 NN denotes factor
T487 124-134 NN denotes activation
T488 135-138 CC denotes and
T489 139-144 NN denotes tumor
T490 145-153 NN denotes necrosis
T491 154-166 NN denotes factor-alpha
T492 167-168 -LRB- denotes (
T493 168-173 NN denotes TNF-α
T494 173-174 -RRB- denotes )
T495 175-185 NN denotes production
T496 186-188 IN denotes in
T497 189-207 NN denotes lipopolysaccharide
T498 208-209 -LRB- denotes (
T499 209-212 NN denotes LPS
T500 212-213 -RRB- denotes )
T501 213-224 JJ denotes -stimulated
T502 225-230 JJ denotes human
T503 231-242 JJ denotes mononuclear
T504 243-248 NN denotes cells
T2791 17-21 DT denotes this
T2792 22-27 NN denotes study
T2793 28-31 VB denotes was
R365 T471 T470 arg1Of objective,The
R366 T471 T472 arg1Of objective,of
R367 T471 T475 arg1Of objective,was
R368 T474 T472 arg2Of study,of
R369 T474 T473 arg1Of study,this
R370 T477 T475 arg2Of determine,was
R371 T477 T476 arg1Of determine,to
R372 T479 T477 arg2Of effect,determine
R373 T479 T478 arg1Of effect,the
R374 T479 T480 arg1Of effect,of
R375 T479 T484 arg1Of effect,on
R376 T483 T480 arg2Of inhibition,of
R377 T483 T481 arg1Of inhibition,nonspecific
R378 T483 T482 arg1Of inhibition,phosphodiesterase
R379 T487 T485 arg1Of activation,transcription
R380 T487 T486 arg1Of activation,factor
R381 T487 T488 arg1Of activation,and
R382 T488 T484 arg2Of and,on
R383 T488 T496 arg1Of and,in
R384 T491 T489 arg1Of factor-alpha,tumor
R385 T491 T490 arg1Of factor-alpha,necrosis
R386 T491 T492 arg1Of factor-alpha,(
R387 T493 T492 arg2Of TNF-α,(
R388 T494 T492 arg3Of ),(
R389 T495 T488 arg2Of production,and
R390 T495 T491 arg1Of production,factor-alpha
R391 T499 T498 arg2Of LPS,(
R392 T500 T498 arg3Of ),(
R393 T501 T497 arg1Of -stimulated,lipopolysaccharide
R394 T501 T498 arg1Of -stimulated,(
R395 T504 T496 arg2Of cells,in
R396 T504 T501 arg1Of cells,-stimulated
R397 T504 T502 arg1Of cells,human
R398 T504 T503 arg1Of cells,mononuclear
R2218 T2792 T2791 arg1Of study,this
R2219 T2792 T2793 arg1Of study,was

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T162 89-99 NN denotes inhibition
T163 100-102 IN denotes on
T164 103-116 NN denotes transcription
T165 117-123 NN denotes factor
T166 124-134 NN denotes activation
T167 135-138 CC denotes and
T168 139-144 NN denotes tumor
T169 145-153 NN denotes necrosis
T170 154-166 NN denotes factor-alpha
T171 167-168 -LRB- denotes (
T172 168-173 NNP denotes TNF-α
T173 173-174 -RRB- denotes )
T174 175-185 NN denotes production
T175 186-188 IN denotes in
T176 189-207 NN denotes lipopolysaccharide
T177 208-209 -LRB- denotes (
T178 209-212 NNP denotes LPS
T179 212-213 -RRB- denotes )
T180 213-214 : denotes -
T181 214-224 VBN denotes stimulated
T182 225-230 JJ denotes human
T183 231-242 NN denotes mononuclear
T184 243-248 NNS denotes cells
T185 248-249 . denotes .
T2464 17-21 DT denotes this
T2465 22-27 NN denotes study
T2466 28-31 VBD denotes was
T149 0-3 DT denotes The
T150 4-13 NN denotes objective
T151 14-16 IN denotes of
T152 17-21 DT denotes this
T153 22-27 NN denotes study
T154 28-31 VBD denotes was
T155 32-34 TO denotes to
T156 35-44 VB denotes determine
T157 45-48 DT denotes the
T158 49-55 NN denotes effect
T159 56-58 IN denotes of
T160 59-70 JJ denotes nonspecific
T161 71-88 NN denotes phosphodiesterase
R78 T180 T162 punct -,inhibition
R79 T181 T154 conj stimulated,was
R80 T182 T184 amod human,cells
R81 T183 T184 compound mononuclear,cells
R82 T184 T181 dobj cells,stimulated
R83 T185 T154 punct .,was
R774 T149 T150 det The,objective
R775 T150 T154 nsubj objective,was
R776 T151 T150 prep of,objective
R777 T152 T153 det this,study
R778 T153 T151 pobj study,of
R779 T154 T154 ROOT was,was
R780 T155 T156 aux to,determine
R781 T156 T154 xcomp determine,was
R782 T157 T158 det the,effect
R783 T158 T156 dobj effect,determine
R784 T159 T158 prep of,effect
R785 T160 T162 amod nonspecific,inhibition
R786 T161 T162 compound phosphodiesterase,inhibition
R1891 T2464 T2465 det this,study
R60 T162 T159 pobj inhibition,of
R61 T163 T162 prep on,inhibition
R62 T164 T165 compound transcription,factor
R63 T165 T166 compound factor,activation
R64 T166 T163 pobj activation,on
R65 T167 T166 cc and,activation
R66 T168 T169 compound tumor,necrosis
R67 T169 T170 compound necrosis,factor-alpha
R68 T170 T166 conj factor-alpha,activation
R69 T171 T172 punct (,TNF-α
R70 T172 T170 appos TNF-α,factor-alpha
R71 T173 T170 punct ),factor-alpha
R72 T174 T166 conj production,activation
R73 T175 T174 prep in,production
R74 T176 T175 pobj lipopolysaccharide,in
R75 T177 T178 punct (,LPS
R76 T178 T176 appos LPS,lipopolysaccharide
R77 T179 T176 punct ),lipopolysaccharide

GO-BP

Id Subject Object Predicate Lexical cue
T826 168-185 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α) production
T834 168-185 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α) production
T838 71-88 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase
T843 89-123 http://purl.obolibrary.org/obo/GO_1901484 denotes inhibition on transcription factor
T844 89-123 http://purl.obolibrary.org/obo/GO_0043433 denotes inhibition on transcription factor
T845 89-123 http://purl.obolibrary.org/obo/GO_0032792 denotes inhibition on transcription factor
T846 103-116 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T848 103-134 http://purl.obolibrary.org/obo/GO_0051091 denotes transcription factor activation
T849 103-134 http://purl.obolibrary.org/obo/GO_0032793 denotes transcription factor activation
T851 103-134 http://purl.obolibrary.org/obo/GO_1901485 denotes transcription factor activation
T852 145-153 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T853 145-153 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T854 145-153 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T855 145-153 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-MF

Id Subject Object Predicate Lexical cue
T865 71-88 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase

GO-CC

Id Subject Object Predicate Lexical cue
T881 243-248 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T113 0-249 Sentence denotes The objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.
T5 0-249 Sentence denotes The objective of this study was to determine the effect of nonspecific phosphodiesterase inhibition on transcription factor activation and tumor necrosis factor-alpha (TNF-α) production in lipopolysaccharide (LPS)-stimulated human mononuclear cells.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T887 49-55 Regulation denotes effect true
T888 139-166 Protein denotes tumor necrosis factor-alpha
T889 168-173 Protein denotes TNF-α
T890 175-185 Gene_expression denotes production
R650 T888 T890 themeOf tumor necrosis factor-alpha,production
R651 T890 T887 themeOf production,effect

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T919 139-166 Protein denotes tumor necrosis factor-alpha
T920 168-173 Protein denotes TNF-α
T921 175-185 Gene_expression denotes production
T922 175-185 Gene_expression denotes production
T923 124-134 Positive_regulation denotes activation
T924 124-134 Positive_regulation denotes activation
T925 49-55 Regulation denotes effect
T926 49-55 Regulation denotes effect
R669 T919 T921 themeOf tumor necrosis factor-alpha,production
R670 T920 T922 themeOf TNF-α,production
R671 T921 T923 themeOf production,activation
R672 T922 T924 themeOf production,activation
R673 T923 T925 themeOf activation,effect
R674 T924 T926 themeOf activation,effect

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T759 139-160 P01375 denotes tumor necrosis factor
T760 168-171 P01375 denotes TNF
T761 168-173 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T32 139-166 Protein denotes tumor necrosis factor-alpha
T33 168-173 Protein denotes TNF-α
T34 175-185 Gene_expression denotes production
R20 T32 T34 themeOf tumor necrosis factor-alpha,production