> top > docs > PMC:2664230 > spans > 15242-16175 > annotations

PMC:2664230 / 15242-16175 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7080 872-881 Positive_regulation denotes increased
T7081 882-886 Protein denotes CREB
T7082 891-898 Binding denotes binding
R5874 T7081 T7082 themeOf CREB,binding
R5875 T7082 T7080 themeOf binding,increased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7258 0-3 NN denotes PTX
T7259 4-15 VB denotes upregulates
T7260 16-20 NN denotes CREB
T7261 21-36 NN denotes phosphorylation
T7262 37-40 CC denotes and
T7263 41-51 NN denotes activation
T7264 52-57 IN denotes after
T7265 58-61 NN denotes LPS
T7266 62-73 NN denotes stimulation
T7267 74-89 NN denotes Phosphorylation
T7268 90-92 IN denotes of
T7269 93-100 JJ denotes nuclear
T7270 101-105 NN denotes CREB
T7271 106-109 VB denotes was
T7272 110-114 VB denotes used
T7273 115-117 IN denotes as
T7274 118-119 DT denotes a
T7275 120-126 NN denotes marker
T7276 127-130 IN denotes for
T7277 131-135 NN denotes CREB
T7278 136-146 NN denotes activation
T7279 148-151 NN denotes LPS
T7280 152-163 NN denotes stimulation
T7281 164-170 VB denotes caused
T7282 171-172 DT denotes a
T7283 173-183 JJ denotes negligible
T7284 184-192 NN denotes increase
T7285 193-195 IN denotes in
T7286 196-200 NN denotes CREB
T7287 201-216 NN denotes phosphorylation
T7288 217-221 WRB denotes when
T7289 222-230 VB denotes compared
T7290 231-233 TO denotes to
T7291 234-241 NN denotes control
T7292 242-243 -LRB- denotes (
T7293 243-249 NN denotes Figure
T7294 250-252 NN denotes 4A
T7295 252-253 -RRB- denotes )
T7296 255-258 NN denotes PTX
T7297 259-264 RB denotes alone
T7298 265-271 VB denotes caused
T7299 272-273 DT denotes a
T7300 274-280 JJ denotes marked
T7301 281-289 NN denotes increase
T7302 290-292 IN denotes in
T7303 293-297 NN denotes CREB
T7304 298-313 NN denotes phosphorylation
T7305 314-315 -LRB- denotes (
T7306 315-316 NN denotes P
T7307 317-318 JJ denotes <
T7308 319-323 CD denotes 0.01
T7309 324-327 CC denotes vs.
T7310 328-332 NN denotes HBSS
T7311 332-333 -RRB- denotes )
T7312 335-339 WRB denotes When
T7313 340-343 NN denotes LPS
T7314 344-347 CC denotes and
T7315 348-351 NN denotes PTX
T7316 352-360 NN denotes exposure
T7317 361-369 VB denotes occurred
T7318 370-384 RB denotes simultaneously
T7319 384-385 -COMMA- denotes ,
T7320 386-390 NN denotes CREB
T7321 391-406 NN denotes phosphorylation
T7322 407-410 VB denotes was
T7323 411-424 RB denotes significantly
T7324 425-431 JJ denotes higher
T7325 432-436 IN denotes than
T7326 437-441 IN denotes with
T7327 442-445 NN denotes LPS
T7328 446-457 NN denotes stimulation
T7329 458-463 RB denotes alone
T7330 464-465 -LRB- denotes (
T7331 465-468 CD denotes 543
T7332 469-470 CC denotes ±
T7333 471-473 CD denotes 92
T7334 474-477 IN denotes vs.
T7335 478-481 CD denotes 100
T7336 482-483 SYM denotes ±
T7337 484-485 CD denotes 0
T7338 485-486 -COLON- denotes ;
T7339 487-488 NN denotes P
T7340 489-490 SYM denotes <
T7341 491-495 CD denotes 0.01
T7342 495-496 -RRB- denotes )
T7343 498-500 IN denotes In
T7344 501-509 NN denotes addition
T7345 509-510 -COMMA- denotes ,
T7346 511-514 DT denotes the
T7347 515-521 NN denotes amount
T7348 522-524 IN denotes of
T7349 525-529 NN denotes CREB
T7350 530-545 NN denotes phosphorylation
T7351 546-550 VB denotes seen
T7352 551-555 IN denotes with
T7353 556-567 JJ denotes concomitant
T7354 568-571 NN denotes LPS
T7355 572-575 CC denotes and
T7356 576-579 NN denotes PTX
T7357 580-589 NN denotes treatment
T7358 590-593 VB denotes was
T7359 594-598 JJ denotes less
T7360 599-603 IN denotes than
T7361 604-608 DT denotes that
T7362 609-613 VB denotes seen
T7363 614-618 IN denotes with
T7364 619-622 NN denotes PTX
T7365 623-628 RB denotes alone
T7366 628-629 -COMMA- denotes ,
T7367 630-638 IN denotes although
T7368 639-643 DT denotes this
T7369 644-654 NN denotes difference
T7370 655-658 VB denotes was
T7371 659-662 RB denotes not
T7372 663-676 RB denotes statistically
T7373 677-688 JJ denotes significant
T7374 689-690 -LRB- denotes (
T7375 690-691 NN denotes P
T7376 692-693 SYM denotes =
T7377 694-698 CD denotes 0.08
T7378 698-699 -RRB- denotes )
T7379 701-703 TO denotes To
T7380 704-713 VB denotes determine
T7381 714-716 IN denotes if
T7382 717-725 NN denotes CREB-DNA
T7383 726-733 NN denotes binding
T7384 734-737 VB denotes was
T7385 738-746 VB denotes affected
T7386 747-749 IN denotes by
T7387 750-753 NN denotes PTX
T7388 754-756 IN denotes in
T7389 757-758 DT denotes a
T7390 759-765 NN denotes manner
T7391 766-773 JJ denotes similar
T7392 774-776 TO denotes to
T7393 777-781 NN denotes CREB
T7394 782-797 NN denotes phosphorylation
T7395 797-798 -COMMA- denotes ,
T7396 799-801 DT denotes an
T7397 802-806 NN denotes EMSA
T7398 807-810 VB denotes was
T7399 811-820 VB denotes performed
T7400 822-830 NN denotes Exposure
T7401 831-833 IN denotes of
T7402 834-848 JJ denotes LPS-stimulated
T7403 849-854 NN denotes cells
T7404 855-857 TO denotes to
T7405 858-861 NN denotes PTX
T7406 862-871 RB denotes similarly
T7407 872-881 VB denotes increased
T7408 882-886 NN denotes CREB
T7409 887-898 NN denotes DNA-binding
T7410 899-907 VB denotes compared
T7411 908-910 TO denotes to
T7412 911-914 NN denotes LPS
T7413 915-920 RB denotes alone
T7414 921-922 -LRB- denotes (
T7415 922-928 NN denotes Figure
T7416 929-931 NN denotes 4B
T7417 931-932 -RRB- denotes )
R6043 T7258 T7259 arg1Of PTX,upregulates
R6044 T7259 T7264 arg1Of upregulates,after
R6045 T7261 T7262 arg1Of phosphorylation,and
R6046 T7262 T7259 arg2Of and,upregulates
R6047 T7262 T7260 arg1Of and,CREB
R6048 T7263 T7262 arg2Of activation,and
R6049 T7266 T7264 arg2Of stimulation,after
R6050 T7266 T7265 arg1Of stimulation,LPS
R6051 T7267 T7268 arg1Of Phosphorylation,of
R6052 T7267 T7271 arg1Of Phosphorylation,was
R6053 T7267 T7272 arg2Of Phosphorylation,used
R6054 T7270 T7268 arg2Of CREB,of
R6055 T7270 T7269 arg1Of CREB,nuclear
R6056 T7272 T7271 arg2Of used,was
R6057 T7272 T7273 arg1Of used,as
R6058 T7275 T7273 arg2Of marker,as
R6059 T7275 T7274 arg1Of marker,a
R6060 T7275 T7276 arg1Of marker,for
R6061 T7278 T7276 arg2Of activation,for
R6062 T7278 T7277 arg1Of activation,CREB
R6063 T7280 T7279 arg1Of stimulation,LPS
R6064 T7280 T7281 arg1Of stimulation,caused
R6065 T7280 T7289 arg1Of stimulation,compared
R6066 T7281 T7288 arg1Of caused,when
R6067 T7284 T7281 arg2Of increase,caused
R6068 T7284 T7282 arg1Of increase,a
R6069 T7284 T7283 arg1Of increase,negligible
R6070 T7284 T7285 arg1Of increase,in
R6071 T7287 T7285 arg2Of phosphorylation,in
R6072 T7287 T7286 arg1Of phosphorylation,CREB
R6073 T7289 T7288 arg2Of compared,when
R6074 T7289 T7290 arg1Of compared,to
R6075 T7291 T7290 arg2Of control,to
R6076 T7291 T7292 arg1Of control,(
R6077 T7294 T7292 arg2Of 4A,(
R6078 T7294 T7293 arg1Of 4A,Figure
R6079 T7295 T7292 arg3Of ),(
R6080 T7296 T7297 arg1Of PTX,alone
R6081 T7296 T7298 arg1Of PTX,caused
R6082 T7301 T7298 arg2Of increase,caused
R6083 T7301 T7299 arg1Of increase,a
R6084 T7301 T7300 arg1Of increase,marked
R6085 T7301 T7302 arg1Of increase,in
R6086 T7304 T7302 arg2Of phosphorylation,in
R6087 T7304 T7303 arg1Of phosphorylation,CREB
R6088 T7304 T7305 arg1Of phosphorylation,(
R6089 T7306 T7305 arg2Of P,(
R6090 T7306 T7307 arg1Of P,<
R6091 T7306 T7309 arg1Of P,vs.
R6092 T7307 T7308 arg1Of <,0.01
R6093 T7310 T7309 arg2Of HBSS,vs.
R6094 T7311 T7305 arg3Of ),(
R6095 T7313 T7314 arg1Of LPS,and
R6096 T7314 T7317 arg1Of and,occurred
R6097 T7316 T7314 arg2Of exposure,and
R6098 T7316 T7315 arg1Of exposure,PTX
R6099 T7317 T7312 arg2Of occurred,When
R6100 T7317 T7318 arg1Of occurred,simultaneously
R6101 T7321 T7320 arg1Of phosphorylation,CREB
R6102 T7321 T7322 arg1Of phosphorylation,was
R6103 T7321 T7324 arg1Of phosphorylation,higher
R6104 T7322 T7312 arg1Of was,When
R6105 T7322 T7319 arg1Of was,","
R6106 T7322 T7330 arg1Of was,(
R6107 T7324 T7322 arg2Of higher,was
R6108 T7324 T7323 arg1Of higher,significantly
R6109 T7324 T7325 arg1Of higher,than
R6110 T7326 T7325 arg2Of with,than
R6111 T7328 T7326 arg2Of stimulation,with
R6112 T7328 T7327 arg1Of stimulation,LPS
R6113 T7328 T7329 arg1Of stimulation,alone
R6114 T7331 T7332 arg1Of 543,±
R6115 T7332 T7330 arg2Of ±,(
R6116 T7332 T7334 arg1Of ±,vs.
R6117 T7332 T7338 arg1Of ±,;
R6118 T7333 T7332 arg2Of 92,±
R6119 T7337 T7334 arg2Of 0,vs.
R6120 T7337 T7335 arg1Of 0,100
R6121 T7337 T7336 arg1Of 0,±
R6122 T7339 T7338 arg2Of P,;
R6123 T7339 T7340 arg1Of P,<
R6124 T7339 T7341 arg1Of P,0.01
R6125 T7342 T7330 arg3Of ),(
R6126 T7344 T7343 arg2Of addition,In
R6127 T7347 T7346 arg1Of amount,the
R6128 T7347 T7348 arg1Of amount,of
R6129 T7347 T7358 arg1Of amount,was
R6130 T7347 T7359 arg1Of amount,less
R6131 T7350 T7348 arg2Of phosphorylation,of
R6132 T7350 T7349 arg1Of phosphorylation,CREB
R6133 T7350 T7351 arg2Of phosphorylation,seen
R6134 T7351 T7352 arg1Of seen,with
R6135 T7354 T7353 arg1Of LPS,concomitant
R6136 T7354 T7355 arg1Of LPS,and
R6137 T7355 T7352 arg2Of and,with
R6138 T7357 T7355 arg2Of treatment,and
R6139 T7357 T7356 arg1Of treatment,PTX
R6140 T7358 T7343 arg1Of was,In
R6141 T7358 T7345 arg1Of was,","
R6142 T7358 T7366 arg1Of was,","
R6143 T7358 T7367 arg1Of was,although
R6144 T7359 T7358 arg2Of less,was
R6145 T7359 T7360 arg1Of less,than
R6146 T7361 T7360 arg2Of that,than
R6147 T7361 T7362 arg2Of that,seen
R6148 T7362 T7363 arg1Of seen,with
R6149 T7364 T7363 arg2Of PTX,with
R6150 T7364 T7365 arg1Of PTX,alone
R6151 T7369 T7368 arg1Of difference,this
R6152 T7369 T7370 arg1Of difference,was
R6153 T7369 T7373 arg1Of difference,significant
R6154 T7370 T7367 arg2Of was,although
R6155 T7370 T7371 arg1Of was,not
R6156 T7370 T7372 arg1Of was,statistically
R6157 T7373 T7370 arg2Of significant,was
R6158 T7373 T7374 arg1Of significant,(
R6159 T7375 T7374 arg2Of P,(
R6160 T7375 T7376 arg1Of P,=
R6161 T7375 T7377 arg1Of P,0.08
R6162 T7378 T7374 arg3Of ),(
R6163 T7380 T7379 arg1Of determine,To
R6164 T7383 T7382 arg1Of binding,CREB-DNA
R6165 T7383 T7384 arg1Of binding,was
R6166 T7383 T7385 arg2Of binding,affected
R6167 T7385 T7380 arg2Of affected,determine
R6168 T7385 T7381 arg1Of affected,if
R6169 T7385 T7384 arg2Of affected,was
R6170 T7385 T7388 arg1Of affected,in
R6171 T7387 T7385 arg1Of PTX,affected
R6172 T7387 T7386 arg2Of PTX,by
R6173 T7390 T7388 arg2Of manner,in
R6174 T7390 T7389 arg1Of manner,a
R6175 T7390 T7391 arg1Of manner,similar
R6176 T7391 T7392 arg1Of similar,to
R6177 T7394 T7392 arg2Of phosphorylation,to
R6178 T7394 T7393 arg1Of phosphorylation,CREB
R6179 T7397 T7396 arg1Of EMSA,an
R6180 T7397 T7398 arg1Of EMSA,was
R6181 T7397 T7399 arg2Of EMSA,performed
R6182 T7399 T7379 modOf performed,To
R6183 T7399 T7395 arg1Of performed,","
R6184 T7399 T7398 arg2Of performed,was
R6185 T7400 T7401 arg1Of Exposure,of
R6186 T7400 T7404 arg1Of Exposure,to
R6187 T7400 T7407 arg1Of Exposure,increased
R6188 T7403 T7401 arg2Of cells,of
R6189 T7403 T7402 arg1Of cells,LPS-stimulated
R6190 T7405 T7404 arg2Of PTX,to
R6191 T7407 T7406 arg1Of increased,similarly
R6192 T7407 T7410 arg1Of increased,compared
R6193 T7409 T7407 arg2Of DNA-binding,increased
R6194 T7409 T7408 arg1Of DNA-binding,CREB
R6195 T7411 T7410 arg2Of to,compared
R6196 T7412 T7411 arg2Of LPS,to
R6197 T7412 T7413 arg1Of LPS,alone
R6198 T7412 T7414 arg1Of LPS,(
R6199 T7416 T7414 arg2Of 4B,(
R6200 T7416 T7415 arg1Of 4B,Figure
R6201 T7417 T7414 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7091 0-3 NNP denotes PTX
T7092 4-15 VBZ denotes upregulates
T7093 16-20 NNP denotes CREB
T7094 21-36 NN denotes phosphorylation
T7095 37-40 CC denotes and
T7096 41-51 NN denotes activation
T7097 52-57 IN denotes after
T7098 58-61 NNP denotes LPS
T7099 62-73 NN denotes stimulation
T7100 74-89 NNP denotes Phosphorylation
T7101 90-92 IN denotes of
T7102 93-100 JJ denotes nuclear
T7103 101-105 NNP denotes CREB
T7104 106-109 VBD denotes was
T7105 110-114 VBN denotes used
T7106 115-117 IN denotes as
T7107 118-119 DT denotes a
T7108 120-126 NN denotes marker
T7109 127-130 IN denotes for
T7110 131-135 NNP denotes CREB
T7111 136-146 NN denotes activation
T7112 146-147 . denotes .
T7113 148-151 NNP denotes LPS
T7114 152-163 NN denotes stimulation
T7115 164-170 VBD denotes caused
T7116 171-172 DT denotes a
T7117 173-183 JJ denotes negligible
T7118 184-192 NN denotes increase
T7119 193-195 IN denotes in
T7120 196-200 NNP denotes CREB
T7121 201-216 NN denotes phosphorylation
T7122 217-221 WRB denotes when
T7123 222-230 VBN denotes compared
T7124 231-233 TO denotes to
T7125 234-241 VB denotes control
T7126 242-243 -LRB- denotes (
T7127 243-249 NN denotes Figure
T7128 250-252 NN denotes 4A
T7129 252-253 -RRB- denotes )
T7130 253-254 . denotes .
T7131 255-258 NNP denotes PTX
T7132 259-264 RB denotes alone
T7133 265-271 VBD denotes caused
T7134 272-273 DT denotes a
T7135 274-280 JJ denotes marked
T7136 281-289 NN denotes increase
T7137 290-292 IN denotes in
T7138 293-297 NNP denotes CREB
T7139 298-313 NN denotes phosphorylation
T7140 314-315 -LRB- denotes (
T7141 315-316 NNP denotes P
T7142 317-318 CD denotes <
T7143 319-323 CD denotes 0.01
T7144 324-327 IN denotes vs.
T7145 328-332 NNP denotes HBSS
T7146 332-333 -RRB- denotes )
T7147 333-334 . denotes .
T7148 335-339 WRB denotes When
T7149 340-343 NNP denotes LPS
T7150 344-347 CC denotes and
T7151 348-351 NNP denotes PTX
T7152 352-360 NN denotes exposure
T7153 361-369 VBD denotes occurred
T7154 370-384 RB denotes simultaneously
T7155 384-385 , denotes ,
T7156 386-390 NNP denotes CREB
T7157 391-406 NN denotes phosphorylation
T7158 407-410 VBD denotes was
T7159 411-424 RB denotes significantly
T7160 425-431 JJR denotes higher
T7161 432-436 IN denotes than
T7162 437-441 IN denotes with
T7163 442-445 NNP denotes LPS
T7164 446-457 NN denotes stimulation
T7165 458-463 RB denotes alone
T7166 464-465 -LRB- denotes (
T7167 465-468 CD denotes 543
T7168 469-470 CD denotes ±
T7169 471-473 CD denotes 92
T7170 474-477 IN denotes vs.
T7171 478-481 CD denotes 100
T7172 482-483 CD denotes ±
T7173 484-485 CD denotes 0
T7174 485-486 : denotes ;
T7175 487-488 NNP denotes P
T7176 489-490 NNP denotes <
T7177 491-495 CD denotes 0.01
T7178 495-496 -RRB- denotes )
T7179 496-497 . denotes .
T7180 498-500 IN denotes In
T7181 501-509 NN denotes addition
T7182 509-510 , denotes ,
T7183 511-514 DT denotes the
T7184 515-521 NN denotes amount
T7185 522-524 IN denotes of
T7186 525-529 NNP denotes CREB
T7187 530-545 NN denotes phosphorylation
T7188 546-550 VBN denotes seen
T7189 551-555 IN denotes with
T7190 556-567 JJ denotes concomitant
T7191 568-571 NNP denotes LPS
T7192 572-575 CC denotes and
T7193 576-579 NNP denotes PTX
T7194 580-589 NN denotes treatment
T7195 590-593 VBD denotes was
T7196 594-598 JJR denotes less
T7197 599-603 IN denotes than
T7198 604-608 DT denotes that
T7199 609-613 VBN denotes seen
T7200 614-618 IN denotes with
T7201 619-622 NNP denotes PTX
T7202 623-628 RB denotes alone
T7203 628-629 , denotes ,
T7204 630-638 IN denotes although
T7205 639-643 DT denotes this
T7206 644-654 NN denotes difference
T7207 655-658 VBD denotes was
T7208 659-662 RB denotes not
T7209 663-676 RB denotes statistically
T7210 677-688 JJ denotes significant
T7211 689-690 -LRB- denotes (
T7212 690-691 NNP denotes P
T7213 692-693 SYM denotes =
T7214 694-698 CD denotes 0.08
T7215 698-699 -RRB- denotes )
T7216 699-700 . denotes .
T7217 701-703 TO denotes To
T7218 704-713 VB denotes determine
T7219 714-716 IN denotes if
T7220 717-725 NNP denotes CREB-DNA
T7221 726-733 JJ denotes binding
T7222 734-737 VBD denotes was
T7223 738-746 VBN denotes affected
T7224 747-749 IN denotes by
T7225 750-753 NNP denotes PTX
T7226 754-756 IN denotes in
T7227 757-758 DT denotes a
T7228 759-765 NN denotes manner
T7229 766-773 JJ denotes similar
T7230 774-776 TO denotes to
T7231 777-781 NNP denotes CREB
T7232 782-797 NN denotes phosphorylation
T7233 797-798 , denotes ,
T7234 799-801 DT denotes an
T7235 802-806 NNP denotes EMSA
T7236 807-810 VBD denotes was
T7237 811-820 VBN denotes performed
T7238 820-821 . denotes .
T7239 822-830 NN denotes Exposure
T7240 831-833 IN denotes of
T7241 834-848 JJ denotes LPS-stimulated
T7242 849-854 NNS denotes cells
T7243 855-857 TO denotes to
T7244 858-861 NNP denotes PTX
T7245 862-871 RB denotes similarly
T7246 872-881 VBD denotes increased
T7247 882-886 NNP denotes CREB
T7248 887-898 JJ denotes DNA-binding
T7249 899-907 VBN denotes compared
T7250 908-910 TO denotes to
T7251 911-914 NNP denotes LPS
T7252 915-920 RB denotes alone
T7253 921-922 -LRB- denotes (
T7254 922-928 NN denotes Figure
T7255 929-931 NN denotes 4B
T7256 931-932 -RRB- denotes )
T7257 932-933 . denotes .
R5876 T7091 T7092 nsubj PTX,upregulates
R5877 T7092 T7092 ROOT upregulates,upregulates
R5878 T7093 T7094 compound CREB,phosphorylation
R5879 T7094 T7092 dobj phosphorylation,upregulates
R5880 T7095 T7094 cc and,phosphorylation
R5881 T7096 T7094 conj activation,phosphorylation
R5882 T7097 T7105 mark after,used
R5883 T7098 T7100 compound LPS,Phosphorylation
R5884 T7099 T7100 compound stimulation,Phosphorylation
R5885 T7100 T7105 nsubjpass Phosphorylation,used
R5886 T7101 T7100 prep of,Phosphorylation
R5887 T7102 T7103 amod nuclear,CREB
R5888 T7103 T7101 pobj CREB,of
R5889 T7104 T7105 auxpass was,used
R5890 T7105 T7092 advcl used,upregulates
R5891 T7106 T7105 prep as,used
R5892 T7107 T7108 det a,marker
R5893 T7108 T7106 pobj marker,as
R5894 T7109 T7108 prep for,marker
R5895 T7110 T7111 compound CREB,activation
R5896 T7111 T7109 pobj activation,for
R5897 T7112 T7092 punct .,upregulates
R5898 T7113 T7114 compound LPS,stimulation
R5899 T7114 T7115 nsubj stimulation,caused
R5900 T7115 T7115 ROOT caused,caused
R5901 T7116 T7118 det a,increase
R5902 T7117 T7118 amod negligible,increase
R5903 T7118 T7115 dobj increase,caused
R5904 T7119 T7118 prep in,increase
R5905 T7120 T7121 compound CREB,phosphorylation
R5906 T7121 T7119 pobj phosphorylation,in
R5907 T7122 T7123 advmod when,compared
R5908 T7123 T7115 advcl compared,caused
R5909 T7124 T7125 aux to,control
R5910 T7125 T7123 xcomp control,compared
R5911 T7126 T7128 punct (,4A
R5912 T7127 T7128 compound Figure,4A
R5913 T7128 T7125 dobj 4A,control
R5914 T7129 T7128 punct ),4A
R5915 T7130 T7115 punct .,caused
R5916 T7131 T7133 nsubj PTX,caused
R5917 T7132 T7131 advmod alone,PTX
R5918 T7133 T7133 ROOT caused,caused
R5919 T7134 T7136 det a,increase
R5920 T7135 T7136 amod marked,increase
R5921 T7136 T7133 dobj increase,caused
R5922 T7137 T7136 prep in,increase
R5923 T7138 T7139 compound CREB,phosphorylation
R5924 T7139 T7137 pobj phosphorylation,in
R5925 T7140 T7141 punct (,P
R5926 T7141 T7136 appos P,increase
R5927 T7142 T7143 compound <,0.01
R5928 T7143 T7141 nummod 0.01,P
R5929 T7144 T7141 prep vs.,P
R5930 T7145 T7144 pobj HBSS,vs.
R5931 T7146 T7141 punct ),P
R5932 T7147 T7133 punct .,caused
R5933 T7148 T7153 advmod When,occurred
R5934 T7149 T7153 nsubj LPS,occurred
R5935 T7150 T7149 cc and,LPS
R5936 T7151 T7149 conj PTX,LPS
R5937 T7152 T7149 conj exposure,LPS
R5938 T7153 T7158 advcl occurred,was
R5939 T7154 T7153 advmod simultaneously,occurred
R5940 T7155 T7158 punct ",",was
R5941 T7156 T7157 compound CREB,phosphorylation
R5942 T7157 T7158 nsubj phosphorylation,was
R5943 T7158 T7158 ROOT was,was
R5944 T7159 T7160 advmod significantly,higher
R5945 T7160 T7158 acomp higher,was
R5946 T7161 T7160 prep than,higher
R5947 T7162 T7161 prep with,than
R5948 T7163 T7164 compound LPS,stimulation
R5949 T7164 T7162 pobj stimulation,with
R5950 T7165 T7164 advmod alone,stimulation
R5951 T7166 T7164 punct (,stimulation
R5952 T7167 T7169 nummod 543,92
R5953 T7168 T7169 nummod ±,92
R5954 T7169 T7164 appos 92,stimulation
R5955 T7170 T7169 prep vs.,92
R5956 T7171 T7173 nummod 100,0
R5957 T7172 T7173 nummod ±,0
R5958 T7173 T7170 pobj 0,vs.
R5959 T7174 T7176 punct ;,<
R5960 T7175 T7176 compound P,<
R5961 T7176 T7158 attr <,was
R5962 T7177 T7176 nummod 0.01,<
R5963 T7178 T7176 punct ),<
R5964 T7179 T7158 punct .,was
R5965 T7180 T7195 prep In,was
R5966 T7181 T7180 pobj addition,In
R5967 T7182 T7195 punct ",",was
R5968 T7183 T7184 det the,amount
R5969 T7184 T7195 nsubj amount,was
R5970 T7185 T7184 prep of,amount
R5971 T7186 T7187 compound CREB,phosphorylation
R5972 T7187 T7185 pobj phosphorylation,of
R5973 T7188 T7184 acl seen,amount
R5974 T7189 T7188 prep with,seen
R5975 T7190 T7191 amod concomitant,LPS
R5976 T7191 T7189 pobj LPS,with
R5977 T7192 T7191 cc and,LPS
R5978 T7193 T7194 compound PTX,treatment
R5979 T7194 T7184 conj treatment,amount
R5980 T7195 T7195 ROOT was,was
R5981 T7196 T7195 acomp less,was
R5982 T7197 T7196 prep than,less
R5983 T7198 T7197 pobj that,than
R5984 T7199 T7198 acl seen,that
R5985 T7200 T7199 prep with,seen
R5986 T7201 T7200 pobj PTX,with
R5987 T7202 T7201 advmod alone,PTX
R5988 T7203 T7195 punct ",",was
R5989 T7204 T7207 mark although,was
R5990 T7205 T7206 det this,difference
R5991 T7206 T7207 nsubj difference,was
R5992 T7207 T7195 advcl was,was
R5993 T7208 T7207 neg not,was
R5994 T7209 T7210 advmod statistically,significant
R5995 T7210 T7207 acomp significant,was
R5996 T7211 T7214 punct (,0.08
R5997 T7212 T7214 dep P,0.08
R5998 T7213 T7214 punct =,0.08
R5999 T7214 T7210 parataxis 0.08,significant
R6000 T7215 T7214 punct ),0.08
R6001 T7216 T7195 punct .,was
R6002 T7217 T7218 aux To,determine
R6003 T7218 T7237 advcl determine,performed
R6004 T7219 T7223 mark if,affected
R6005 T7220 T7221 compound CREB-DNA,binding
R6006 T7221 T7223 nsubjpass binding,affected
R6007 T7222 T7223 auxpass was,affected
R6008 T7223 T7237 advcl affected,performed
R6009 T7224 T7223 agent by,affected
R6010 T7225 T7224 pobj PTX,by
R6011 T7226 T7223 prep in,affected
R6012 T7227 T7228 det a,manner
R6013 T7228 T7226 pobj manner,in
R6014 T7229 T7228 amod similar,manner
R6015 T7230 T7229 prep to,similar
R6016 T7231 T7232 compound CREB,phosphorylation
R6017 T7232 T7230 pobj phosphorylation,to
R6018 T7233 T7237 punct ",",performed
R6019 T7234 T7235 det an,EMSA
R6020 T7235 T7237 nsubjpass EMSA,performed
R6021 T7236 T7237 auxpass was,performed
R6022 T7237 T7237 ROOT performed,performed
R6023 T7238 T7237 punct .,performed
R6024 T7239 T7246 nsubj Exposure,increased
R6025 T7240 T7239 prep of,Exposure
R6026 T7241 T7242 amod LPS-stimulated,cells
R6027 T7242 T7240 pobj cells,of
R6028 T7243 T7239 prep to,Exposure
R6029 T7244 T7243 pobj PTX,to
R6030 T7245 T7246 advmod similarly,increased
R6031 T7246 T7246 ROOT increased,increased
R6032 T7247 T7248 compound CREB,DNA-binding
R6033 T7248 T7246 dobj DNA-binding,increased
R6034 T7249 T7246 prep compared,increased
R6035 T7250 T7249 prep to,compared
R6036 T7251 T7250 pobj LPS,to
R6037 T7252 T7251 advmod alone,LPS
R6038 T7253 T7255 punct (,4B
R6039 T7254 T7255 compound Figure,4B
R6040 T7255 T7251 appos 4B,LPS
R6041 T7256 T7246 punct ),increased
R6042 T7257 T7246 punct .,increased

GO-BP

Id Subject Object Predicate Lexical cue
T7486 21-36 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7487 201-216 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7488 298-313 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7489 391-406 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7490 530-545 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7491 782-797 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7492 21-51 http://purl.obolibrary.org/obo/GO_0042327 denotes phosphorylation and activation
T7493 62-89 http://purl.obolibrary.org/obo/GO_0042327 denotes stimulation Phosphorylation
T7494 131-146 http://purl.obolibrary.org/obo/GO_0032793 denotes CREB activation

GO-MF

Id Subject Object Predicate Lexical cue
T7498 722-733 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T7499 887-898 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding
T7500 726-733 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7501 891-898 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T7502 849-854 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7083 0-73 Sentence denotes PTX upregulates CREB phosphorylation and activation after LPS stimulation
T7084 74-147 Sentence denotes Phosphorylation of nuclear CREB was used as a marker for CREB activation.
T7085 148-254 Sentence denotes LPS stimulation caused a negligible increase in CREB phosphorylation when compared to control (Figure 4A).
T7086 255-334 Sentence denotes PTX alone caused a marked increase in CREB phosphorylation (P < 0.01 vs. HBSS).
T7087 335-497 Sentence denotes When LPS and PTX exposure occurred simultaneously, CREB phosphorylation was significantly higher than with LPS stimulation alone (543 ± 92 vs. 100 ± 0; P < 0.01).
T7088 498-700 Sentence denotes In addition, the amount of CREB phosphorylation seen with concomitant LPS and PTX treatment was less than that seen with PTX alone, although this difference was not statistically significant (P = 0.08).
T7089 701-821 Sentence denotes To determine if CREB-DNA binding was affected by PTX in a manner similar to CREB phosphorylation, an EMSA was performed.
T7090 822-933 Sentence denotes Exposure of LPS-stimulated cells to PTX similarly increased CREB DNA-binding compared to LPS alone (Figure 4B).
T117 0-73 Sentence denotes PTX upregulates CREB phosphorylation and activation after LPS stimulation
T118 74-147 Sentence denotes Phosphorylation of nuclear CREB was used as a marker for CREB activation.
T119 148-254 Sentence denotes LPS stimulation caused a negligible increase in CREB phosphorylation when compared to control (Figure 4A).
T120 255-334 Sentence denotes PTX alone caused a marked increase in CREB phosphorylation (P < 0.01 vs. HBSS).
T121 335-497 Sentence denotes When LPS and PTX exposure occurred simultaneously, CREB phosphorylation was significantly higher than with LPS stimulation alone (543 ± 92 vs. 100 ± 0; P < 0.01).
T122 498-700 Sentence denotes In addition, the amount of CREB phosphorylation seen with concomitant LPS and PTX treatment was less than that seen with PTX alone, although this difference was not statistically significant (P = 0.08).
T123 701-821 Sentence denotes To determine if CREB-DNA binding was affected by PTX in a manner similar to CREB phosphorylation, an EMSA was performed.
T124 822-933 Sentence denotes Exposure of LPS-stimulated cells to PTX similarly increased CREB DNA-binding compared to LPS alone (Figure 4B).

events-check-again

Id Subject Object Predicate Lexical cue
T7544 872-881 Positive_regulation denotes increased
T7545 882-886 Protein denotes CREB
T7546 891-898 Binding denotes binding
R6228 T7545 T7546 themeOf CREB,binding
R6229 T7546 T7544 themeOf binding,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7503 16-20 Protein denotes CREB
T7504 21-36 Phosphorylation denotes phosphorylation
T7505 41-51 Positive_regulation denotes activation
T7506 4-15 Positive_regulation denotes upregulates
T7507 131-135 Protein denotes CREB
T7508 136-146 Positive_regulation denotes activation
T7509 196-200 Protein denotes CREB
T7510 201-216 Phosphorylation denotes phosphorylation
T7511 184-192 Positive_regulation denotes increase
T7512 255-258 Protein denotes PTX
T7513 293-297 Protein denotes CREB
T7514 298-313 Phosphorylation denotes phosphorylation
T7515 281-289 Positive_regulation denotes increase
T7516 348-351 Protein denotes PTX
T7517 386-390 Protein denotes CREB
T7518 391-406 Phosphorylation denotes phosphorylation
T7519 425-431 Positive_regulation denotes higher
T7520 525-529 Protein denotes CREB
T7521 619-622 Protein denotes PTX
T7522 530-545 Phosphorylation denotes phosphorylation
T7523 717-725 Protein denotes CREB-DNA
T7524 750-753 Protein denotes PTX
T7525 777-781 Protein denotes CREB
T7526 726-733 Binding denotes binding
T7527 738-746 Regulation denotes affected
T7528 782-797 Phosphorylation denotes phosphorylation
T7529 858-861 Protein denotes PTX
T7530 882-886 Protein denotes CREB
T7531 872-881 Positive_regulation denotes increased
R6204 T7503 T7504 themeOf CREB,phosphorylation
R6205 T7504 T7505 themeOf phosphorylation,activation
R6206 T7505 T7506 themeOf activation,upregulates
R6207 T7507 T7508 themeOf CREB,activation
R6208 T7509 T7510 themeOf CREB,phosphorylation
R6209 T7510 T7511 themeOf phosphorylation,increase
R6210 T7512 T7515 causeOf PTX,increase
R6211 T7513 T7514 themeOf CREB,phosphorylation
R6212 T7514 T7515 themeOf phosphorylation,increase
R6213 T7517 T7518 themeOf CREB,phosphorylation
R6214 T7518 T7519 themeOf phosphorylation,higher
R6215 T7520 T7522 themeOf CREB,phosphorylation
R6216 T7523 T7526 themeOf CREB-DNA,binding
R6217 T7524 T7527 causeOf PTX,affected
R6218 T7525 T7528 themeOf CREB,phosphorylation
R6219 T7526 T7527 themeOf binding,affected
R6220 T7530 T7531 themeOf CREB,increased

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7418 16-20 Q8TEY5 denotes CREB
T7419 16-20 Q02930 denotes CREB
T7420 16-20 P18848 denotes CREB
T7421 16-20 P16220 denotes CREB
T7422 16-20 P15336 denotes CREB
T7423 16-20 O43889 denotes CREB
T7424 101-105 Q8TEY5 denotes CREB
T7425 101-105 Q02930 denotes CREB
T7426 101-105 P18848 denotes CREB
T7427 101-105 P16220 denotes CREB
T7428 101-105 P15336 denotes CREB
T7429 101-105 O43889 denotes CREB
T7430 131-135 Q8TEY5 denotes CREB
T7431 131-135 Q02930 denotes CREB
T7432 131-135 P18848 denotes CREB
T7433 131-135 P16220 denotes CREB
T7434 131-135 P15336 denotes CREB
T7435 131-135 O43889 denotes CREB
T7436 196-200 Q8TEY5 denotes CREB
T7437 196-200 Q02930 denotes CREB
T7438 196-200 P18848 denotes CREB
T7439 196-200 P16220 denotes CREB
T7440 196-200 P15336 denotes CREB
T7441 196-200 O43889 denotes CREB
T7442 293-297 Q8TEY5 denotes CREB
T7443 293-297 Q02930 denotes CREB
T7444 293-297 P18848 denotes CREB
T7445 293-297 P16220 denotes CREB
T7446 293-297 P15336 denotes CREB
T7447 293-297 O43889 denotes CREB
T7448 386-390 Q8TEY5 denotes CREB
T7449 386-390 Q02930 denotes CREB
T7450 386-390 P18848 denotes CREB
T7451 386-390 P16220 denotes CREB
T7452 386-390 P15336 denotes CREB
T7453 386-390 O43889 denotes CREB
T7454 525-529 Q8TEY5 denotes CREB
T7455 525-529 Q02930 denotes CREB
T7456 525-529 P18848 denotes CREB
T7457 525-529 P16220 denotes CREB
T7458 525-529 P15336 denotes CREB
T7459 525-529 O43889 denotes CREB
T7460 717-721 Q8TEY5 denotes CREB
T7461 717-721 Q02930 denotes CREB
T7462 717-721 P18848 denotes CREB
T7463 717-721 P16220 denotes CREB
T7464 717-721 P15336 denotes CREB
T7465 717-721 O43889 denotes CREB
T7466 777-781 Q8TEY5 denotes CREB
T7467 777-781 Q02930 denotes CREB
T7468 777-781 P18848 denotes CREB
T7469 777-781 P16220 denotes CREB
T7470 777-781 P15336 denotes CREB
T7471 777-781 O43889 denotes CREB
T7472 882-886 Q8TEY5 denotes CREB
T7473 882-886 Q02930 denotes CREB
T7474 882-886 P18848 denotes CREB
T7475 882-886 P16220 denotes CREB
T7476 882-886 P15336 denotes CREB
T7477 882-886 O43889 denotes CREB

test2

Id Subject Object Predicate Lexical cue
T7077 872-881 Positive_regulation denotes increased
T7078 882-886 Protein denotes CREB
T7079 891-898 Binding denotes binding
R5872 T7078 T7079 themeOf CREB,binding
R5873 T7079 T7077 themeOf binding,increased