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PMC:2626671 / 5810-6037 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3884 0-8 JJ denotes Relative
T3885 9-11 TO denotes to
T3886 12-15 PRP-DOLLAR- denotes its
T3887 16-26 NN denotes expression
T3888 27-29 IN denotes in
T3889 30-35 JJ denotes naive
T3890 36-37 NN denotes T
T3891 38-43 NN denotes cells
T3892 43-44 -COMMA- denotes ,
T3893 45-53 NN denotes perforin
T3894 54-55 -LRB- denotes (
T3895 55-59 NN denotes Prf1
T3896 59-60 -RRB- denotes )
T3897 61-65 NN denotes mRNA
T3898 66-76 NN denotes expression
T3899 77-80 VB denotes did
T3900 81-84 RB denotes not
T3901 85-93 VB denotes increase
T3902 94-105 RB denotes appreciably
T3903 106-108 IN denotes at
T3904 109-112 NN denotes day
T3905 113-114 CD denotes 2
T3906 115-118 CC denotes but
T3907 119-125 VB denotes showed
T3908 126-127 DT denotes a
T3909 128-140 JJ denotes reproducible
T3910 141-149 NN denotes decrease
T3911 150-152 IN denotes at
T3912 153-156 NN denotes day
T3913 157-158 CD denotes 4
T3914 158-159 -COMMA- denotes ,
T3915 160-168 VB denotes followed
T3916 169-171 IN denotes by
T3917 172-178 JJ denotes robust
T3918 179-191 NN denotes reexpression
T3919 192-199 IN denotes between
T3920 200-204 NN denotes days
T3921 205-206 CD denotes 4
T3922 207-210 CC denotes and
T3923 211-212 CD denotes 8
T3924 213-214 -LRB- denotes (
T3925 214-218 NN denotes Fig.
T3926 219-220 CD denotes 1
T3927 220-221 -COMMA- denotes ,
T3928 222-225 NN denotes A–D
T3929 225-226 -RRB- denotes )
R3065 T3885 T3884 arg1Of to,Relative
R3066 T3887 T3885 arg2Of expression,to
R3067 T3887 T3886 arg1Of expression,its
R3068 T3887 T3888 arg1Of expression,in
R3069 T3891 T3888 arg2Of cells,in
R3070 T3891 T3889 arg1Of cells,naive
R3071 T3891 T3890 arg1Of cells,T
R3072 T3895 T3894 arg2Of Prf1,(
R3073 T3896 T3894 arg3Of ),(
R3074 T3898 T3893 arg1Of expression,perforin
R3075 T3898 T3894 arg1Of expression,(
R3076 T3898 T3897 arg1Of expression,mRNA
R3077 T3898 T3899 arg1Of expression,did
R3078 T3898 T3901 arg1Of expression,increase
R3079 T3898 T3907 arg1Of expression,showed
R3080 T3901 T3899 arg2Of increase,did
R3081 T3901 T3900 arg1Of increase,not
R3082 T3901 T3902 arg1Of increase,appreciably
R3083 T3901 T3903 arg1Of increase,at
R3084 T3901 T3906 arg1Of increase,but
R3085 T3904 T3903 arg2Of day,at
R3086 T3904 T3905 arg1Of day,2
R3087 T3906 T3885 arg1Of but,to
R3088 T3906 T3892 arg1Of but,","
R3089 T3906 T3914 arg1Of but,","
R3090 T3906 T3915 modOf but,followed
R3091 T3907 T3906 arg2Of showed,but
R3092 T3910 T3907 arg2Of decrease,showed
R3093 T3910 T3908 arg1Of decrease,a
R3094 T3910 T3909 arg1Of decrease,reproducible
R3095 T3910 T3911 arg1Of decrease,at
R3096 T3912 T3911 arg2Of day,at
R3097 T3912 T3913 arg1Of day,4
R3098 T3918 T3915 arg1Of reexpression,followed
R3099 T3918 T3916 arg2Of reexpression,by
R3100 T3918 T3917 arg1Of reexpression,robust
R3101 T3918 T3919 arg1Of reexpression,between
R3102 T3921 T3922 arg1Of 4,and
R3103 T3922 T3919 arg2Of and,between
R3104 T3922 T3920 arg1Of and,days
R3105 T3922 T3924 arg1Of and,(
R3106 T3923 T3922 arg2Of 8,and
R3107 T3925 T3924 arg2Of Fig.,(
R3108 T3925 T3926 arg1Of Fig.,1
R3109 T3925 T3927 arg1Of Fig.,","
R3110 T3928 T3927 arg2Of A–D,","
R3111 T3929 T3924 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4255 12-15 Anaphor denotes its
T4256 45-53 Antecedent denotes perforin
R3444 T4255 T4256 boundBy its,perforin

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3443 0-8 JJ denotes Relative
T3444 9-11 TO denotes to
T3445 12-15 PRP$ denotes its
T3446 16-26 NN denotes expression
T3447 27-29 IN denotes in
T3448 30-35 JJ denotes naive
T3449 36-37 NNP denotes T
T3450 38-43 NNS denotes cells
T3451 43-44 , denotes ,
T3452 45-53 NN denotes perforin
T3453 54-55 -LRB- denotes (
T3454 55-59 NNP denotes Prf1
T3455 59-60 -RRB- denotes )
T3456 61-65 NNP denotes mRNA
T3457 66-76 NN denotes expression
T3458 77-80 VBD denotes did
T3459 81-84 RB denotes not
T3460 85-93 VB denotes increase
T3461 94-105 RB denotes appreciably
T3462 106-108 IN denotes at
T3463 109-112 NN denotes day
T3464 113-114 CD denotes 2
T3465 115-118 CC denotes but
T3466 119-125 VBD denotes showed
T3467 126-127 DT denotes a
T3468 128-140 JJ denotes reproducible
T3469 141-149 NN denotes decrease
T3470 150-152 IN denotes at
T3471 153-156 NN denotes day
T3472 157-158 CD denotes 4
T3473 158-159 , denotes ,
T3474 160-168 VBN denotes followed
T3475 169-171 IN denotes by
T3476 172-178 JJ denotes robust
T3477 179-191 NN denotes reexpression
T3478 192-199 IN denotes between
T3479 200-204 NNS denotes days
T3480 205-206 CD denotes 4
T3481 207-210 CC denotes and
T3482 211-212 CD denotes 8
T3483 213-214 -LRB- denotes (
T3484 214-218 NN denotes Fig.
T3485 219-220 CD denotes 1
T3486 220-221 , denotes ,
T3487 222-223 DT denotes A
T3488 224-225 NNP denotes D
T3489 225-226 -RRB- denotes )
T3490 226-227 . denotes .
R2627 T3443 T3443 ROOT Relative,Relative
R2628 T3444 T3443 prep to,Relative
R2629 T3445 T3446 poss its,expression
R2630 T3446 T3444 pobj expression,to
R2631 T3447 T3446 prep in,expression
R2632 T3448 T3450 amod naive,cells
R2633 T3449 T3450 compound T,cells
R2634 T3450 T3447 pobj cells,in
R2635 T3451 T3443 punct ",",Relative
R2636 T3452 T3443 conj perforin,Relative
R2637 T3453 T3452 punct (,perforin
R2638 T3454 T3452 appos Prf1,perforin
R2639 T3455 T3452 punct ),perforin
R2640 T3456 T3457 compound mRNA,expression
R2641 T3457 T3460 nsubj expression,increase
R2642 T3458 T3460 aux did,increase
R2643 T3459 T3460 neg not,increase
R2644 T3460 T3460 ROOT increase,increase
R2645 T3461 T3460 advmod appreciably,increase
R2646 T3462 T3460 prep at,increase
R2647 T3463 T3462 pobj day,at
R2648 T3464 T3463 nummod 2,day
R2649 T3465 T3460 cc but,increase
R2650 T3466 T3460 conj showed,increase
R2651 T3467 T3469 det a,decrease
R2652 T3468 T3469 amod reproducible,decrease
R2653 T3469 T3466 dobj decrease,showed
R2654 T3470 T3469 prep at,decrease
R2655 T3471 T3470 pobj day,at
R2656 T3472 T3471 nummod 4,day
R2657 T3473 T3469 punct ",",decrease
R2658 T3474 T3466 conj followed,showed
R2659 T3475 T3474 agent by,followed
R2660 T3476 T3477 amod robust,reexpression
R2661 T3477 T3475 pobj reexpression,by
R2662 T3478 T3474 prep between,followed
R2663 T3479 T3478 pobj days,between
R2664 T3480 T3484 nummod 4,Fig.
R2665 T3481 T3480 cc and,4
R2666 T3482 T3480 conj 8,4
R2667 T3483 T3484 punct (,Fig.
R2668 T3484 T3474 npadvmod Fig.,followed
R2669 T3485 T3484 nummod 1,Fig.
R2670 T3486 T3484 punct ",",Fig.
R2671 T3487 T3484 appos A,Fig.
R2672 T3488 T3487 appos D,A
R2673 T3489 T3487 punct ),A
R2674 T3490 T3460 punct .,increase

sentences

Id Subject Object Predicate Lexical cue
T3370 0-227 Sentence denotes Relative to its expression in naive T cells, perforin (Prf1) mRNA expression did not increase appreciably at day 2 but showed a reproducible decrease at day 4, followed by robust reexpression between days 4 and 8 (Fig. 1, A–D).
T37 0-227 Sentence denotes Relative to its expression in naive T cells, perforin (Prf1) mRNA expression did not increase appreciably at day 2 but showed a reproducible decrease at day 4, followed by robust reexpression between days 4 and 8 (Fig. 1, A–D).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T4504 16-26 Gene_expression denotes expression
T4505 45-53 Protein denotes perforin
T4506 55-59 Protein denotes Prf1
T4507 61-76 Transcription denotes mRNA expression
T4508 85-93 Positive_regulation denotes increase true
T4509 141-149 Negative_regulation denotes decrease
T4510 179-191 Positive_regulation denotes reexpression
R3562 T4505 T4504 themeOf perforin,expression
R3563 T4505 T4507 themeOf perforin,mRNA expression
R3564 T4506 T4505 equivalentTo Prf1,perforin
R3565 T4507 T4508 themeOf mRNA expression,increase
R3566 T4507 T4509 themeOf mRNA expression,decrease
R3567 T4507 T4510 themeOf mRNA expression,reexpression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4541 45-53 Protein denotes perforin
T4542 55-59 Protein denotes Prf1
T4543 66-76 Transcription denotes expression
T4544 66-76 Transcription denotes expression
T4545 85-93 Positive_regulation denotes increase
T4546 85-93 Positive_regulation denotes increase
T4547 141-149 Negative_regulation denotes decrease
T4548 141-149 Negative_regulation denotes decrease
T4549 179-191 Positive_regulation denotes reexpression
T4550 179-191 Positive_regulation denotes reexpression
R3587 T4541 T4543 themeOf perforin,expression
R3588 T4542 T4544 themeOf Prf1,expression
R3590 T4543 T4545 themeOf expression,increase
R3591 T4543 T4547 themeOf expression,decrease
R3592 T4543 T4549 themeOf expression,reexpression
R3593 T4544 T4546 themeOf expression,increase
R3594 T4544 T4548 themeOf expression,decrease
R3595 T4544 T4550 themeOf expression,reexpression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3320 16-26 Gene_expression denotes expression
T3321 45-53 Protein denotes perforin
T3322 55-59 Protein denotes Prf1
T3323 61-76 Transcription denotes mRNA expression
T3324 85-93 Positive_regulation denotes increase true
T3325 141-149 Negative_regulation denotes decrease
T3326 179-191 Positive_regulation denotes reexpression
R2545 T3321 T3320 themeOf perforin,expression
R2546 T3321 T3323 themeOf perforin,mRNA expression
R2547 T3322 T3321 equivalentTo Prf1,perforin
R2548 T3323 T3324 themeOf mRNA expression,increase
R2549 T3323 T3325 themeOf mRNA expression,decrease
R2550 T3323 T3326 themeOf mRNA expression,reexpression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4267 0-8 Q04864 denotes Relative
T4268 45-53 P14222 denotes perforin
T4269 55-59 P14222 denotes Prf1

test2

Id Subject Object Predicate Lexical cue Negation
T3280 16-26 Gene_expression denotes expression
T3281 45-53 Protein denotes perforin true
T3282 55-59 Protein denotes Prf1
T3283 61-76 Transcription denotes mRNA expression
T3284 85-93 Positive_regulation denotes increase
T3285 141-149 Negative_regulation denotes decrease
R2521 T3281 T3280 themeOf perforin,expression
R2522 T3281 T3283 themeOf perforin,mRNA expression
R2523 T3282 T3281 equivalentTo Prf1,perforin
R2524 T3283 T3285 themeOf mRNA expression,decrease
R2525 T3283 T3284 themeOf mRNA expression,increase