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PMC:2626671 / 5776-6108 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3876 2-10 NN denotes perforin
T3877 11-18 NN denotes protein
T3878 19-20 -LRB- denotes (
T3879 20-24 NN denotes Fig.
T3880 25-26 CD denotes 1
T3881 26-27 -COMMA- denotes ,
T3882 28-31 NN denotes A–D
T3883 31-32 -RRB- denotes )
T3884 34-42 JJ denotes Relative
T3885 43-45 TO denotes to
T3886 46-49 PRP-DOLLAR- denotes its
T3887 50-60 NN denotes expression
T3888 61-63 IN denotes in
T3889 64-69 JJ denotes naive
T3890 70-71 NN denotes T
T3891 72-77 NN denotes cells
T3892 77-78 -COMMA- denotes ,
T3893 79-87 NN denotes perforin
T3894 88-89 -LRB- denotes (
T3895 89-93 NN denotes Prf1
T3896 93-94 -RRB- denotes )
T3897 95-99 NN denotes mRNA
T3898 100-110 NN denotes expression
T3899 111-114 VB denotes did
T3900 115-118 RB denotes not
T3901 119-127 VB denotes increase
T3902 128-139 RB denotes appreciably
T3903 140-142 IN denotes at
T3904 143-146 NN denotes day
T3905 147-148 CD denotes 2
T3906 149-152 CC denotes but
T3907 153-159 VB denotes showed
T3908 160-161 DT denotes a
T3909 162-174 JJ denotes reproducible
T3910 175-183 NN denotes decrease
T3911 184-186 IN denotes at
T3912 187-190 NN denotes day
T3913 191-192 CD denotes 4
T3914 192-193 -COMMA- denotes ,
T3915 194-202 VB denotes followed
T3916 203-205 IN denotes by
T3917 206-212 JJ denotes robust
T3918 213-225 NN denotes reexpression
T3919 226-233 IN denotes between
T3920 234-238 NN denotes days
T3921 239-240 CD denotes 4
T3922 241-244 CC denotes and
T3923 245-246 CD denotes 8
T3924 247-248 -LRB- denotes (
T3925 248-252 NN denotes Fig.
T3926 253-254 CD denotes 1
T3927 254-255 -COMMA- denotes ,
T3928 256-259 NN denotes A–D
T3929 259-260 -RRB- denotes )
T3930 262-264 IN denotes In
T3931 265-273 NN denotes contrast
T3932 273-274 -COMMA- denotes ,
T3933 275-283 NN denotes granzyme
T3934 284-285 NN denotes B
T3935 286-287 -LRB- denotes (
T3936 287-291 NN denotes Gzmb
T3937 291-292 -RRB- denotes )
T3938 293-297 NN denotes mRNA
T3939 298-301 VB denotes was
T3940 302-305 JJ denotes low
T3941 306-308 CC denotes or
T3942 309-321 JJ denotes undetectable
T3943 322-324 IN denotes in
T3944 325-330 JJ denotes naive
T3945 331-332 NN denotes T
R3058 T3877 T3876 arg1Of protein,perforin
R3059 T3877 T3878 arg1Of protein,(
R3060 T3879 T3878 arg2Of Fig.,(
R3061 T3879 T3880 arg1Of Fig.,1
R3062 T3879 T3881 arg1Of Fig.,","
R3063 T3882 T3881 arg2Of A–D,","
R3064 T3883 T3878 arg3Of ),(
R3065 T3885 T3884 arg1Of to,Relative
R3066 T3887 T3885 arg2Of expression,to
R3067 T3887 T3886 arg1Of expression,its
R3068 T3887 T3888 arg1Of expression,in
R3069 T3891 T3888 arg2Of cells,in
R3070 T3891 T3889 arg1Of cells,naive
R3071 T3891 T3890 arg1Of cells,T
R3072 T3895 T3894 arg2Of Prf1,(
R3073 T3896 T3894 arg3Of ),(
R3074 T3898 T3893 arg1Of expression,perforin
R3075 T3898 T3894 arg1Of expression,(
R3076 T3898 T3897 arg1Of expression,mRNA
R3077 T3898 T3899 arg1Of expression,did
R3078 T3898 T3901 arg1Of expression,increase
R3079 T3898 T3907 arg1Of expression,showed
R3080 T3901 T3899 arg2Of increase,did
R3081 T3901 T3900 arg1Of increase,not
R3082 T3901 T3902 arg1Of increase,appreciably
R3083 T3901 T3903 arg1Of increase,at
R3084 T3901 T3906 arg1Of increase,but
R3085 T3904 T3903 arg2Of day,at
R3086 T3904 T3905 arg1Of day,2
R3087 T3906 T3885 arg1Of but,to
R3088 T3906 T3892 arg1Of but,","
R3089 T3906 T3914 arg1Of but,","
R3090 T3906 T3915 modOf but,followed
R3091 T3907 T3906 arg2Of showed,but
R3092 T3910 T3907 arg2Of decrease,showed
R3093 T3910 T3908 arg1Of decrease,a
R3094 T3910 T3909 arg1Of decrease,reproducible
R3095 T3910 T3911 arg1Of decrease,at
R3096 T3912 T3911 arg2Of day,at
R3097 T3912 T3913 arg1Of day,4
R3098 T3918 T3915 arg1Of reexpression,followed
R3099 T3918 T3916 arg2Of reexpression,by
R3100 T3918 T3917 arg1Of reexpression,robust
R3101 T3918 T3919 arg1Of reexpression,between
R3102 T3921 T3922 arg1Of 4,and
R3103 T3922 T3919 arg2Of and,between
R3104 T3922 T3920 arg1Of and,days
R3105 T3922 T3924 arg1Of and,(
R3106 T3923 T3922 arg2Of 8,and
R3107 T3925 T3924 arg2Of Fig.,(
R3108 T3925 T3926 arg1Of Fig.,1
R3109 T3925 T3927 arg1Of Fig.,","
R3110 T3928 T3927 arg2Of A–D,","
R3111 T3929 T3924 arg3Of ),(
R3112 T3931 T3930 arg2Of contrast,In
R3113 T3936 T3935 arg2Of Gzmb,(
R3114 T3937 T3935 arg3Of ),(
R3115 T3938 T3933 arg1Of mRNA,granzyme
R3116 T3938 T3934 arg1Of mRNA,B
R3117 T3938 T3935 arg1Of mRNA,(
R3118 T3938 T3939 arg1Of mRNA,was
R3119 T3938 T3940 arg1Of mRNA,low
R3120 T3938 T3942 arg1Of mRNA,undetectable
R3125 T3940 T3941 arg1Of low,or
R3126 T3941 T3939 arg2Of or,was
R3127 T3941 T3943 arg1Of or,in
R3128 T3942 T3941 arg2Of undetectable,or

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T4255 46-49 Anaphor denotes its
T4256 79-87 Antecedent denotes perforin
R3444 T4255 T4256 boundBy its,perforin

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3433 2-10 NN denotes perforin
T3434 11-18 NN denotes protein
T3435 19-20 -LRB- denotes (
T3436 20-24 FW denotes Fig.
T3437 25-26 CD denotes 1
T3438 26-27 , denotes ,
T3439 28-29 DT denotes A
T3440 30-31 NNP denotes D
T3441 31-32 -RRB- denotes )
T3442 32-33 . denotes .
T3443 34-42 JJ denotes Relative
T3444 43-45 TO denotes to
T3445 46-49 PRP$ denotes its
T3446 50-60 NN denotes expression
T3447 61-63 IN denotes in
T3448 64-69 JJ denotes naive
T3449 70-71 NNP denotes T
T3450 72-77 NNS denotes cells
T3451 77-78 , denotes ,
T3452 79-87 NN denotes perforin
T3453 88-89 -LRB- denotes (
T3454 89-93 NNP denotes Prf1
T3455 93-94 -RRB- denotes )
T3456 95-99 NNP denotes mRNA
T3457 100-110 NN denotes expression
T3458 111-114 VBD denotes did
T3459 115-118 RB denotes not
T3460 119-127 VB denotes increase
T3461 128-139 RB denotes appreciably
T3462 140-142 IN denotes at
T3463 143-146 NN denotes day
T3464 147-148 CD denotes 2
T3465 149-152 CC denotes but
T3466 153-159 VBD denotes showed
T3467 160-161 DT denotes a
T3468 162-174 JJ denotes reproducible
T3469 175-183 NN denotes decrease
T3470 184-186 IN denotes at
T3471 187-190 NN denotes day
T3472 191-192 CD denotes 4
T3473 192-193 , denotes ,
T3474 194-202 VBN denotes followed
T3475 203-205 IN denotes by
T3476 206-212 JJ denotes robust
T3477 213-225 NN denotes reexpression
T3478 226-233 IN denotes between
T3479 234-238 NNS denotes days
T3480 239-240 CD denotes 4
T3481 241-244 CC denotes and
T3482 245-246 CD denotes 8
T3483 247-248 -LRB- denotes (
T3484 248-252 NN denotes Fig.
T3485 253-254 CD denotes 1
T3486 254-255 , denotes ,
T3487 256-257 DT denotes A
T3488 258-259 NNP denotes D
T3489 259-260 -RRB- denotes )
T3490 260-261 . denotes .
T3491 262-264 IN denotes In
T3492 265-273 NN denotes contrast
T3493 273-274 , denotes ,
T3494 275-283 NN denotes granzyme
T3495 284-285 NNP denotes B
T3496 286-287 -LRB- denotes (
T3497 287-291 NNP denotes Gzmb
T3498 291-292 -RRB- denotes )
T3499 293-297 NNP denotes mRNA
T3500 298-301 VBD denotes was
T3501 302-305 JJ denotes low
T3502 306-308 CC denotes or
T3503 309-321 JJ denotes undetectable
T3504 322-324 IN denotes in
T3505 325-330 JJ denotes naive
T3506 331-332 NNP denotes T
R2617 T3433 T3434 compound perforin,protein
R2619 T3435 T3434 punct (,protein
R2620 T3436 T3434 parataxis Fig.,protein
R2621 T3437 T3436 nummod 1,Fig.
R2622 T3438 T3436 punct ",",Fig.
R2623 T3439 T3440 det A,D
R2624 T3440 T3436 appos D,Fig.
R2625 T3441 T3436 punct ),Fig.
R2627 T3443 T3443 ROOT Relative,Relative
R2628 T3444 T3443 prep to,Relative
R2629 T3445 T3446 poss its,expression
R2630 T3446 T3444 pobj expression,to
R2631 T3447 T3446 prep in,expression
R2632 T3448 T3450 amod naive,cells
R2633 T3449 T3450 compound T,cells
R2634 T3450 T3447 pobj cells,in
R2635 T3451 T3443 punct ",",Relative
R2636 T3452 T3443 conj perforin,Relative
R2637 T3453 T3452 punct (,perforin
R2638 T3454 T3452 appos Prf1,perforin
R2639 T3455 T3452 punct ),perforin
R2640 T3456 T3457 compound mRNA,expression
R2641 T3457 T3460 nsubj expression,increase
R2642 T3458 T3460 aux did,increase
R2643 T3459 T3460 neg not,increase
R2644 T3460 T3460 ROOT increase,increase
R2645 T3461 T3460 advmod appreciably,increase
R2646 T3462 T3460 prep at,increase
R2647 T3463 T3462 pobj day,at
R2648 T3464 T3463 nummod 2,day
R2649 T3465 T3460 cc but,increase
R2650 T3466 T3460 conj showed,increase
R2651 T3467 T3469 det a,decrease
R2652 T3468 T3469 amod reproducible,decrease
R2653 T3469 T3466 dobj decrease,showed
R2654 T3470 T3469 prep at,decrease
R2655 T3471 T3470 pobj day,at
R2656 T3472 T3471 nummod 4,day
R2657 T3473 T3469 punct ",",decrease
R2658 T3474 T3466 conj followed,showed
R2659 T3475 T3474 agent by,followed
R2660 T3476 T3477 amod robust,reexpression
R2661 T3477 T3475 pobj reexpression,by
R2662 T3478 T3474 prep between,followed
R2663 T3479 T3478 pobj days,between
R2664 T3480 T3484 nummod 4,Fig.
R2665 T3481 T3480 cc and,4
R2666 T3482 T3480 conj 8,4
R2667 T3483 T3484 punct (,Fig.
R2668 T3484 T3474 npadvmod Fig.,followed
R2669 T3485 T3484 nummod 1,Fig.
R2670 T3486 T3484 punct ",",Fig.
R2671 T3487 T3484 appos A,Fig.
R2672 T3488 T3487 appos D,A
R2673 T3489 T3487 punct ),A
R2674 T3490 T3460 punct .,increase
R2675 T3491 T3491 ROOT In,In
R2676 T3492 T3491 pobj contrast,In
R2677 T3493 T3495 quantmod ",",B
R2678 T3494 T3495 compound granzyme,B
R2679 T3495 T3491 conj B,In
R2680 T3496 T3495 punct (,B
R2681 T3497 T3495 appos Gzmb,B
R2682 T3498 T3495 punct ),B
R2683 T3499 T3500 nsubj mRNA,was
R2684 T3500 T3500 ROOT was,was
R2685 T3501 T3500 acomp low,was
R2686 T3502 T3501 cc or,low
R2687 T3503 T3501 conj undetectable,low
R2688 T3504 T3503 prep in,undetectable

sentences

Id Subject Object Predicate Lexical cue
T3370 34-261 Sentence denotes Relative to its expression in naive T cells, perforin (Prf1) mRNA expression did not increase appreciably at day 2 but showed a reproducible decrease at day 4, followed by robust reexpression between days 4 and 8 (Fig. 1, A–D).
T37 34-261 Sentence denotes Relative to its expression in naive T cells, perforin (Prf1) mRNA expression did not increase appreciably at day 2 but showed a reproducible decrease at day 4, followed by robust reexpression between days 4 and 8 (Fig. 1, A–D).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T4503 2-10 Protein denotes perforin
T4504 50-60 Gene_expression denotes expression
T4505 79-87 Protein denotes perforin
T4506 89-93 Protein denotes Prf1
T4507 95-110 Transcription denotes mRNA expression
T4508 119-127 Positive_regulation denotes increase true
T4509 175-183 Negative_regulation denotes decrease
T4510 213-225 Positive_regulation denotes reexpression
T4511 275-285 Protein denotes granzyme B
T4512 287-291 Protein denotes Gzmb
T4513 302-321 Transcription denotes low or undetectable true
R3562 T4505 T4504 themeOf perforin,expression
R3563 T4505 T4507 themeOf perforin,mRNA expression
R3564 T4506 T4505 equivalentTo Prf1,perforin
R3565 T4507 T4508 themeOf mRNA expression,increase
R3566 T4507 T4509 themeOf mRNA expression,decrease
R3567 T4507 T4510 themeOf mRNA expression,reexpression
R3568 T4511 T4513 themeOf granzyme B,low or undetectable
R3571 T4512 T4511 equivalentTo Gzmb,granzyme B

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4538 2-10 Protein denotes perforin
T4541 79-87 Protein denotes perforin
T4542 89-93 Protein denotes Prf1
T4543 100-110 Transcription denotes expression
T4544 100-110 Transcription denotes expression
T4545 119-127 Positive_regulation denotes increase
T4546 119-127 Positive_regulation denotes increase
T4547 175-183 Negative_regulation denotes decrease
T4548 175-183 Negative_regulation denotes decrease
T4549 213-225 Positive_regulation denotes reexpression
T4550 213-225 Positive_regulation denotes reexpression
T4551 275-285 Protein denotes granzyme B
T4552 287-291 Protein denotes Gzmb
T4554 309-321 Transcription denotes undetectable
T4555 309-321 Transcription denotes undetectable
R3587 T4541 T4543 themeOf perforin,expression
R3588 T4542 T4544 themeOf Prf1,expression
R3590 T4543 T4545 themeOf expression,increase
R3591 T4543 T4547 themeOf expression,decrease
R3592 T4543 T4549 themeOf expression,reexpression
R3593 T4544 T4546 themeOf expression,increase
R3594 T4544 T4548 themeOf expression,decrease
R3595 T4544 T4550 themeOf expression,reexpression
R3597 T4551 T4554 themeOf granzyme B,undetectable
R3601 T4552 T4555 themeOf Gzmb,undetectable

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3319 2-10 Protein denotes perforin
T3320 50-60 Gene_expression denotes expression
T3321 79-87 Protein denotes perforin
T3322 89-93 Protein denotes Prf1
T3323 95-110 Transcription denotes mRNA expression
T3324 119-127 Positive_regulation denotes increase true
T3325 175-183 Negative_regulation denotes decrease
T3326 213-225 Positive_regulation denotes reexpression
T3327 275-285 Protein denotes granzyme B
T3328 287-291 Protein denotes Gzmb
T3329 302-321 Transcription denotes low or undetectable true
R2545 T3321 T3320 themeOf perforin,expression
R2546 T3321 T3323 themeOf perforin,mRNA expression
R2547 T3322 T3321 equivalentTo Prf1,perforin
R2548 T3323 T3324 themeOf mRNA expression,increase
R2549 T3323 T3325 themeOf mRNA expression,decrease
R2550 T3323 T3326 themeOf mRNA expression,reexpression
R2551 T3327 T3329 themeOf granzyme B,low or undetectable
R2554 T3328 T3327 equivalentTo Gzmb,granzyme B

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4266 2-10 P14222 denotes perforin
T4267 34-42 Q04864 denotes Relative
T4268 79-87 P14222 denotes perforin
T4269 89-93 P14222 denotes Prf1
T4270 275-285 P10144 denotes granzyme B
T4271 287-291 P10144 denotes Gzmb

test2

Id Subject Object Predicate Lexical cue Negation
T3279 2-10 Protein denotes perforin
T3280 50-60 Gene_expression denotes expression
T3281 79-87 Protein denotes perforin true
T3282 89-93 Protein denotes Prf1
T3283 95-110 Transcription denotes mRNA expression
T3284 119-127 Positive_regulation denotes increase
T3285 175-183 Negative_regulation denotes decrease
T3286 275-285 Protein denotes granzyme B
T3287 287-291 Protein denotes Gzmb
R2521 T3281 T3280 themeOf perforin,expression
R2522 T3281 T3283 themeOf perforin,mRNA expression
R2523 T3282 T3281 equivalentTo Prf1,perforin
R2524 T3283 T3285 themeOf mRNA expression,decrease
R2525 T3283 T3284 themeOf mRNA expression,increase
R2528 T3287 T3286 equivalentTo Gzmb,granzyme B