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PMC:2626671 / 559-843 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T354 0-1 -COMMA- denotes ,
T355 2-7 NN denotes T-box
T356 8-21 NN denotes transcription
T357 22-29 NN denotes factors
T358 30-34 WDT denotes that
T359 35-43 VB denotes regulate
T360 44-47 DT denotes the
T361 48-53 JJ denotes early
T362 54-57 CC denotes and
T363 58-62 JJ denotes late
T364 63-69 NN denotes phases
T365 70-72 IN denotes of
T366 73-83 NN denotes interferon
T367 84-85 -LRB- denotes (
T368 85-88 NN denotes IFN
T369 88-89 -RRB- denotes )
T370 90-91 NN denotes γ
T371 92-102 NN denotes expression
T372 102-103 -COMMA- denotes ,
T373 104-116 RB denotes respectively
T374 118-120 IN denotes In
T375 121-129 NN denotes addition
T376 129-130 -COMMA- denotes ,
T377 131-133 PRP denotes we
T378 134-145 VB denotes demonstrate
T379 146-147 DT denotes a
T380 148-156 JJ denotes critical
T381 157-161 NN denotes role
T382 162-165 IN denotes for
T383 166-169 DT denotes the
T384 170-183 NN denotes transcription
T385 184-190 NN denotes factor
T386 191-196 NN denotes Runx3
T387 197-199 IN denotes in
T388 200-203 NN denotes CTL
T389 204-219 NN denotes differentiation
T390 221-226 NN denotes Runx3
T391 227-236 VB denotes regulates
T392 237-242 NN denotes Eomes
T393 243-253 NN denotes expression
T394 254-256 RB denotes as
T395 257-261 RB denotes well
T396 262-264 IN denotes as
T397 265-275 NN denotes expression
T398 276-278 IN denotes of
T399 279-284 CD denotes three
R286 T354 T358 arg1Of ",",that
R287 T354 T359 arg1Of ",",regulate
R288 T357 T354 arg2Of factors,","
R289 T357 T355 arg1Of factors,T-box
R290 T357 T356 arg1Of factors,transcription
R291 T359 T372 arg1Of regulate,","
R292 T359 T373 arg1Of regulate,respectively
R293 T361 T362 arg1Of early,and
R294 T363 T362 arg2Of late,and
R295 T364 T359 arg2Of phases,regulate
R296 T364 T360 arg1Of phases,the
R297 T364 T361 arg1Of phases,early
R298 T364 T363 arg1Of phases,late
R299 T364 T365 arg1Of phases,of
R300 T368 T367 arg2Of IFN,(
R301 T369 T367 arg3Of ),(
R302 T371 T365 arg2Of expression,of
R303 T371 T366 arg1Of expression,interferon
R304 T371 T367 arg1Of expression,(
R305 T371 T370 arg1Of expression,γ
R306 T375 T374 arg2Of addition,In
R307 T377 T378 arg1Of we,demonstrate
R308 T378 T374 arg1Of demonstrate,In
R309 T378 T376 arg1Of demonstrate,","
R310 T381 T378 arg2Of role,demonstrate
R311 T381 T379 arg1Of role,a
R312 T381 T380 arg1Of role,critical
R313 T381 T382 arg1Of role,for
R314 T381 T387 arg1Of role,in
R315 T386 T382 arg2Of Runx3,for
R316 T386 T383 arg1Of Runx3,the
R317 T386 T384 arg1Of Runx3,transcription
R318 T386 T385 arg1Of Runx3,factor
R319 T389 T387 arg2Of differentiation,in
R320 T389 T388 arg1Of differentiation,CTL
R321 T390 T391 arg1Of Runx3,regulates
R322 T393 T396 arg1Of expression,as
R323 T396 T391 arg2Of as,regulates
R324 T396 T392 arg1Of as,Eomes
R325 T396 T394 arg1Of as,as
R326 T396 T395 arg1Of as,well
R327 T397 T396 arg2Of expression,as
R328 T397 T398 arg1Of expression,of

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T445 2-29 Anaphor denotes T-box transcription factors

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T175 0-1 , denotes ,
T176 2-7 JJ denotes T-box
T177 8-21 NN denotes transcription
T178 22-29 NNS denotes factors
T179 30-34 WDT denotes that
T180 35-43 VBP denotes regulate
T181 44-47 DT denotes the
T182 48-53 JJ denotes early
T183 54-57 CC denotes and
T184 58-62 JJ denotes late
T185 63-69 NNS denotes phases
T186 70-72 IN denotes of
T187 73-83 NN denotes interferon
T188 84-85 -LRB- denotes (
T189 85-88 NNP denotes IFN
T190 88-89 -RRB- denotes )
T191 90-91 VBP denotes γ
T192 92-102 NN denotes expression
T193 102-103 , denotes ,
T194 104-116 RB denotes respectively
T195 116-117 . denotes .
T196 118-120 IN denotes In
T197 121-129 NN denotes addition
T198 129-130 , denotes ,
T199 131-133 PRP denotes we
T200 134-145 VBP denotes demonstrate
T201 146-147 DT denotes a
T202 148-156 JJ denotes critical
T203 157-161 NN denotes role
T204 162-165 IN denotes for
T205 166-169 DT denotes the
T206 170-183 NN denotes transcription
T207 184-190 NN denotes factor
T208 191-196 NNP denotes Runx3
T209 197-199 IN denotes in
T210 200-203 NNP denotes CTL
T211 204-219 NN denotes differentiation
T212 219-220 . denotes .
T213 221-226 JJ denotes Runx3
T214 227-236 VBZ denotes regulates
T215 237-242 NNP denotes Eomes
T216 243-253 NN denotes expression
T217 254-256 RB denotes as
T218 257-261 RB denotes well
T219 262-264 IN denotes as
T220 265-275 NN denotes expression
T221 276-278 IN denotes of
T222 279-284 CD denotes three
R106 T175 T178 punct ",",factors
R107 T176 T178 amod T-box,factors
R108 T177 T178 compound transcription,factors
R109 T178 T192 nmod factors,expression
R110 T179 T180 nsubj that,regulate
R111 T180 T178 relcl regulate,factors
R112 T181 T185 det the,phases
R113 T182 T185 amod early,phases
R114 T183 T182 cc and,early
R115 T184 T182 conj late,early
R116 T185 T180 dobj phases,regulate
R117 T186 T185 prep of,phases
R118 T187 T186 pobj interferon,of
R119 T188 T189 punct (,IFN
R120 T189 T178 appos IFN,factors
R121 T190 T178 punct ),factors
R122 T191 T192 compound γ,expression
R127 T196 T200 prep In,demonstrate
R128 T197 T196 pobj addition,In
R129 T198 T200 punct ",",demonstrate
R130 T199 T200 nsubj we,demonstrate
R131 T200 T200 ROOT demonstrate,demonstrate
R132 T201 T203 det a,role
R133 T202 T203 amod critical,role
R134 T203 T200 dobj role,demonstrate
R135 T204 T203 prep for,role
R136 T205 T207 det the,factor
R137 T206 T207 compound transcription,factor
R138 T207 T204 pobj factor,for
R139 T208 T207 appos Runx3,factor
R140 T209 T208 prep in,Runx3
R141 T210 T211 compound CTL,differentiation
R142 T211 T209 pobj differentiation,in
R143 T212 T200 punct .,demonstrate
R144 T213 T214 nsubj Runx3,regulates
R145 T214 T214 ROOT regulates,regulates
R146 T215 T216 compound Eomes,expression
R147 T216 T214 dobj expression,regulates
R148 T217 T219 advmod as,as
R149 T218 T219 advmod well,as
R150 T219 T216 cc as,expression
R151 T220 T216 conj expression,expression
R152 T221 T216 prep of,expression

sentences

Id Subject Object Predicate Lexical cue
T81 118-220 Sentence denotes In addition, we demonstrate a critical role for the transcription factor Runx3 in CTL differentiation.
T6 118-220 Sentence denotes In addition, we demonstrate a critical role for the transcription factor Runx3 in CTL differentiation.

events-check-again

Id Subject Object Predicate Lexical cue
T618 265-275 Gene_expression denotes expression
T619 265-275 Gene_expression denotes expression
T605 35-43 Regulation denotes regulate
T606 35-43 Regulation denotes regulate
T607 73-91 Protein denotes interferon (IFN) γ
T608 92-102 Gene_expression denotes expression
T609 191-196 Protein denotes Runx3
T610 221-226 Protein denotes Runx3
T611 227-236 Regulation denotes regulates
T612 227-236 Regulation denotes regulates
T613 227-236 Regulation denotes regulates
T614 227-236 Regulation denotes regulates
T615 237-242 Protein denotes Eomes
T616 243-253 Gene_expression denotes expression
T617 265-275 Gene_expression denotes expression
R512 T607 T608 themeOf interferon (IFN) γ,expression
R513 T608 T606 themeOf expression,regulate
R514 T608 T605 themeOf expression,regulate
R515 T610 T611 causeOf Runx3,regulates
R516 T610 T614 causeOf Runx3,regulates
R517 T610 T612 causeOf Runx3,regulates
R518 T610 T613 causeOf Runx3,regulates
R519 T615 T616 themeOf Eomes,expression
R520 T616 T611 themeOf expression,regulates
R521 T617 T614 themeOf expression,regulates
R522 T618 T612 themeOf expression,regulates
R523 T619 T613 themeOf expression,regulates

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T627 2-29 Protein denotes T-box transcription factors
T628 73-83 Protein denotes interferon
T629 85-88 Protein denotes IFN
T630 170-196 Protein denotes transcription factor Runx3
T631 221-226 Protein denotes Runx3
T635 265-275 Gene_expression denotes expression
T636 265-275 Gene_expression denotes expression
T637 265-275 Gene_expression denotes expression
T638 227-236 Regulation denotes regulates
T639 227-236 Regulation denotes regulates
T640 227-236 Regulation denotes regulates
R429 T631 T638 causeOf Runx3,regulates
R430 T631 T639 causeOf Runx3,regulates
R431 T631 T640 causeOf Runx3,regulates
R529 T635 T638 themeOf expression,regulates
R530 T636 T639 themeOf expression,regulates
R531 T637 T640 themeOf expression,regulates

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T62 191-196 Protein denotes Runx3
T63 221-226 Protein denotes Runx3
T64 227-236 Regulation denotes regulates
T65 227-236 Regulation denotes regulates
T66 227-236 Regulation denotes regulates
T67 227-236 Regulation denotes regulates
T68 237-242 Protein denotes Eomes
T69 243-253 Gene_expression denotes expression
T70 265-275 Gene_expression denotes expression
T71 265-275 Gene_expression denotes expression
T72 265-275 Gene_expression denotes expression
T58 35-43 Regulation denotes regulate
T59 35-43 Regulation denotes regulate
T60 73-91 Protein denotes interferon (IFN) γ
T61 92-102 Gene_expression denotes expression
R453 T60 T61 themeOf interferon (IFN) γ,expression
R454 T61 T59 themeOf expression,regulate
R455 T61 T58 themeOf expression,regulate
R456 T63 T64 causeOf Runx3,regulates
R457 T63 T67 causeOf Runx3,regulates
R458 T63 T65 causeOf Runx3,regulates
R459 T63 T66 causeOf Runx3,regulates
R460 T68 T69 themeOf Eomes,expression
R461 T69 T64 themeOf expression,regulates
R462 T70 T67 themeOf expression,regulates
R463 T71 T65 themeOf expression,regulates
R464 T72 T66 themeOf expression,regulates

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T458 191-196 Q13761 denotes Runx3
T459 221-226 Q13761 denotes Runx3
T460 237-242 O95936 denotes Eomes

test2

Id Subject Object Predicate Lexical cue
T37 35-43 Regulation denotes regulate
T38 73-91 Protein denotes interferon (IFN) γ
T39 92-102 Gene_expression denotes expression
T40 191-196 Protein denotes Runx3
T41 221-226 Protein denotes Runx3
T42 227-236 Regulation denotes regulates
T43 237-242 Protein denotes Eomes
T44 243-253 Gene_expression denotes expression
T45 265-275 Gene_expression denotes expression
R440 T38 T39 themeOf interferon (IFN) γ,expression
R441 T39 T37 themeOf expression,regulate
R442 T41 T42 causeOf Runx3,regulates
R443 T43 T44 themeOf Eomes,expression
R444 T44 T42 themeOf expression,regulates