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PMC:2626671 / 4291-5467 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2913 0-1 DT denotes A
T2914 2-6 NN denotes cell
T2915 7-14 NN denotes culture
T2916 15-21 NN denotes system
T2917 22-24 TO denotes to
T2918 25-32 VB denotes monitor
T2919 33-41 NN denotes effector
T2920 42-45 NN denotes CTL
T2921 46-61 NN denotes differentiation
T2922 62-64 PRP denotes We
T2923 65-69 VB denotes used
T2924 70-71 DT denotes a
T2925 72-78 JJ denotes simple
T2926 79-83 NN denotes cell
T2927 84-91 NN denotes culture
T2928 92-98 NN denotes system
T2929 99-101 TO denotes to
T2930 102-109 VB denotes examine
T2931 110-113 DT denotes the
T2932 114-122 NN denotes kinetics
T2933 123-125 IN denotes of
T2934 126-134 NN denotes effector
T2935 135-139 NN denotes gene
T2936 140-150 NN denotes expression
T2937 151-157 IN denotes during
T2938 158-162 JJ denotes CD8+
T2939 163-164 NN denotes T
T2940 165-169 NN denotes cell
T2941 170-185 NN denotes differentiation
T2942 187-192 JJ denotes Naive
T2943 193-197 JJ denotes CD8+
T2944 198-199 NN denotes T
T2945 200-205 NN denotes cells
T2946 206-210 IN denotes from
T2947 211-214 NN denotes P14
T2948 215-218 NN denotes TCR
T2949 219-229 JJ denotes transgenic
T2950 230-234 NN denotes mice
T2951 235-239 VB denotes were
T2952 240-249 VB denotes activated
T2953 250-253 IN denotes for
T2954 254-255 CD denotes 2
T2955 256-257 NN denotes d
T2956 258-262 IN denotes with
T2957 263-271 NN denotes anti-CD3
T2958 272-275 CC denotes and
T2959 276-285 NN denotes anti-CD28
T2960 286-288 CC denotes or
T2961 289-293 IN denotes with
T2962 294-301 JJ denotes splenic
T2963 302-306 NN denotes APCs
T2964 307-309 IN denotes in
T2965 310-313 DT denotes the
T2966 314-322 NN denotes presence
T2967 323-325 IN denotes of
T2968 326-330 NN denotes Gp33
T2969 331-338 NN denotes peptide
T2970 338-339 -COMMA- denotes ,
T2971 340-343 CC denotes and
T2972 344-348 VB denotes were
T2973 349-357 VB denotes cultured
T2974 358-360 IN denotes in
T2975 361-366 NN denotes media
T2976 367-377 VB denotes containing
T2977 378-381 CD denotes 100
T2978 382-386 NN denotes U/ml
T2979 387-389 IN denotes of
T2980 390-401 JJ denotes recombinant
T2981 402-407 JJ denotes human
T2982 408-412 NN denotes IL-2
T2983 413-414 -LRB- denotes (
T2984 414-420 NN denotes rhIL-2
T2985 420-421 -RRB- denotes )
T2986 423-425 PRP denotes We
T2987 426-430 VB denotes used
T2988 431-434 NN denotes TCR
T2989 435-445 JJ denotes transgenic
T2990 446-450 NN denotes mice
T2991 451-454 IN denotes for
T2992 455-460 DT denotes these
T2993 461-472 NN denotes experiments
T2994 473-480 IN denotes because
T2995 481-485 PRP denotes they
T2996 486-493 VB denotes provide
T2997 494-495 DT denotes a
T2998 496-504 JJ denotes reliable
T2999 505-511 NN denotes source
T3000 512-514 IN denotes of
T3001 515-519 JJ denotes CD8+
T3002 520-521 NN denotes T
T3003 522-527 NN denotes cells
T3004 528-532 WDT denotes that
T3005 533-536 VB denotes are
T3006 537-542 RB denotes truly
T3007 543-548 JJ denotes naive
T3008 548-549 -COLON- denotes ;
T3009 550-557 RB denotes however
T3010 557-558 -COMMA- denotes ,
T3011 559-561 PRP denotes we
T3012 562-567 VB denotes chose
T3013 568-571 RB denotes not
T3014 572-574 TO denotes to
T3015 575-584 VB denotes stimulate
T3016 585-590 NN denotes cells
T3017 591-595 IN denotes with
T3018 596-603 NN denotes antigen
T3019 604-606 IN denotes in
T3020 607-611 JJ denotes most
T3021 612-623 NN denotes experiments
T3022 624-626 RB denotes so
T3023 627-629 IN denotes as
T3024 630-632 TO denotes to
T3025 633-638 VB denotes avoid
T3026 639-652 NN denotes contamination
T3027 653-657 IN denotes with
T3028 658-666 NN denotes proteins
T3029 667-670 CC denotes and
T3030 671-678 JJ denotes nucleic
T3031 679-684 NN denotes acids
T3032 685-692 VB denotes derived
T3033 693-697 IN denotes from
T3034 698-702 NN denotes APCs
T3035 704-709 EX denotes There
T3036 710-714 VB denotes were
T3037 715-719 RB denotes only
T3038 720-725 JJ denotes minor
T3039 726-737 NN denotes differences
T3040 738-740 IN denotes in
T3041 741-745 NN denotes gene
T3042 746-756 NN denotes expression
T3043 757-763 IN denotes during
T3044 764-779 NN denotes differentiation
T3045 780-787 VB denotes induced
T3046 788-790 IN denotes by
T3047 791-802 NN denotes antigen/APC
T3048 803-809 IN denotes versus
T3049 810-828 JJ denotes anti-CD3/anti-CD28
T3050 828-829 -COMMA- denotes ,
T3051 830-833 CC denotes and
T3052 834-837 DT denotes the
T3053 838-843 JJ denotes major
T3054 844-855 NN denotes conclusions
T3055 856-865 VB denotes presented
T3056 866-868 IN denotes in
T3057 869-873 DT denotes this
T3058 874-880 NN denotes report
T3059 881-884 VB denotes are
T3060 885-888 DT denotes the
T3061 889-893 JJ denotes same
T3062 894-897 IN denotes for
T3063 898-902 DT denotes both
T3064 903-913 VB denotes activating
T3065 914-924 NN denotes conditions
T3066 926-931 IN denotes Under
T3067 932-935 PRP-DOLLAR- denotes our
T3068 936-943 NN denotes culture
T3069 944-954 NN denotes conditions
T3070 954-955 -COMMA- denotes ,
T3071 956-965 VB denotes activated
T3072 966-970 JJ denotes CD8+
T3073 971-972 NN denotes T
T3074 973-978 NN denotes cells
T3075 979-987 VB denotes expanded
T3076 988-1001 RB denotes exponentially
T3077 1002-1005 CC denotes and
T3078 1006-1017 VB denotes accumulated
T3079 1018-1021 IN denotes for
T3080 1022-1023 JJ denotes >
T3081 1023-1024 CD denotes 8
T3082 1025-1026 NN denotes d
T3083 1028-1030 PRP denotes We
T3084 1031-1038 VB denotes limited
T3085 1039-1042 PRP-DOLLAR- denotes our
T3086 1043-1051 NN denotes analysis
T3087 1052-1054 TO denotes to
T3088 1055-1058 DT denotes the
T3089 1059-1064 JJ denotes first
T3090 1065-1068 CD denotes 6–8
T3091 1069-1070 NN denotes d
T3092 1071-1076 IN denotes after
T3093 1077-1087 NN denotes activation
T3094 1087-1088 -COMMA- denotes ,
T3095 1089-1090 DT denotes a
T3096 1091-1097 NN denotes period
T3097 1098-1102 WDT denotes that
T3098 1103-1112 VB denotes coincides
T3099 1113-1117 IN denotes with
T3100 1118-1124 JJ denotes clonal
T3101 1125-1134 NN denotes expansion
T3102 1135-1137 IN denotes of
T3103 1138-1142 JJ denotes CD8+
T3104 1143-1144 NN denotes T
T3105 1145-1150 NN denotes cells
T3106 1151-1156 IN denotes after
T3107 1157-1167 NN denotes activation
T3108 1168-1170 FW denotes in
T3109 1171-1175 FW denotes vivo
R2286 T2916 T2913 arg1Of system,A
R2287 T2916 T2914 arg1Of system,cell
R2288 T2916 T2915 arg1Of system,culture
R2289 T2916 T2917 modOf system,to
R2290 T2918 T2917 arg1Of monitor,to
R2291 T2921 T2918 arg2Of differentiation,monitor
R2292 T2921 T2919 arg1Of differentiation,effector
R2293 T2921 T2920 arg1Of differentiation,CTL
R2294 T2922 T2923 arg1Of We,used
R2295 T2922 T2930 arg1Of We,examine
R2296 T2928 T2923 arg2Of system,used
R2297 T2928 T2924 arg1Of system,a
R2298 T2928 T2925 arg1Of system,simple
R2299 T2928 T2926 arg1Of system,cell
R2300 T2928 T2927 arg1Of system,culture
R2301 T2930 T2923 arg3Of examine,used
R2302 T2930 T2929 arg1Of examine,to
R2303 T2932 T2930 arg2Of kinetics,examine
R2304 T2932 T2931 arg1Of kinetics,the
R2305 T2932 T2933 arg1Of kinetics,of
R2306 T2932 T2937 arg1Of kinetics,during
R2307 T2936 T2933 arg2Of expression,of
R2308 T2936 T2934 arg1Of expression,effector
R2309 T2936 T2935 arg1Of expression,gene
R2310 T2941 T2937 arg2Of differentiation,during
R2311 T2941 T2938 arg1Of differentiation,CD8+
R2312 T2941 T2939 arg1Of differentiation,T
R2313 T2941 T2940 arg1Of differentiation,cell
R2314 T2945 T2942 arg1Of cells,Naive
R2315 T2945 T2943 arg1Of cells,CD8+
R2316 T2945 T2944 arg1Of cells,T
R2317 T2945 T2946 arg1Of cells,from
R2318 T2945 T2951 arg1Of cells,were
R2319 T2945 T2952 arg2Of cells,activated
R2320 T2945 T2972 arg1Of cells,were
R2321 T2945 T2973 arg2Of cells,cultured
R2322 T2950 T2946 arg2Of mice,from
R2323 T2950 T2947 arg1Of mice,P14
R2324 T2950 T2948 arg1Of mice,TCR
R2325 T2950 T2949 arg1Of mice,transgenic
R2326 T2952 T2951 arg2Of activated,were
R2327 T2952 T2953 arg1Of activated,for
R2328 T2952 T2956 arg1Of activated,with
R2329 T2952 T2961 arg1Of activated,with
R2330 T2952 T2964 arg1Of activated,in
R2331 T2952 T2971 arg1Of activated,and
R2332 T2955 T2953 arg2Of d,for
R2333 T2955 T2954 arg1Of d,2
R2334 T2956 T2960 arg1Of with,or
R2335 T2957 T2958 arg1Of anti-CD3,and
R2336 T2958 T2956 arg2Of and,with
R2337 T2959 T2958 arg2Of anti-CD28,and
R2338 T2961 T2960 arg2Of with,or
R2339 T2963 T2961 arg2Of APCs,with
R2340 T2963 T2962 arg1Of APCs,splenic
R2341 T2966 T2964 arg2Of presence,in
R2342 T2966 T2965 arg1Of presence,the
R2343 T2966 T2967 arg1Of presence,of
R2344 T2969 T2967 arg2Of peptide,of
R2345 T2969 T2968 arg1Of peptide,Gp33
R2346 T2971 T2970 arg1Of and,","
R2347 T2973 T2971 arg2Of cultured,and
R2348 T2973 T2972 arg2Of cultured,were
R2349 T2973 T2974 arg1Of cultured,in
R2350 T2975 T2974 arg2Of media,in
R2351 T2975 T2976 arg1Of media,containing
R2352 T2978 T2976 arg2Of U/ml,containing
R2353 T2978 T2977 arg1Of U/ml,100
R2354 T2978 T2979 arg1Of U/ml,of
R2355 T2982 T2979 arg2Of IL-2,of
R2356 T2982 T2980 arg1Of IL-2,recombinant
R2357 T2982 T2981 arg1Of IL-2,human
R2358 T2982 T2983 arg1Of IL-2,(
R2359 T2984 T2983 arg2Of rhIL-2,(
R2360 T2985 T2983 arg3Of ),(
R2361 T2986 T2987 arg1Of We,used
R2362 T2987 T2994 arg1Of used,because
R2363 T2987 T3008 arg1Of used,;
R2364 T2990 T2987 arg2Of mice,used
R2365 T2990 T2988 arg1Of mice,TCR
R2366 T2990 T2989 arg1Of mice,transgenic
R2367 T2990 T2991 arg1Of mice,for
R2368 T2993 T2991 arg2Of experiments,for
R2369 T2993 T2992 arg1Of experiments,these
R2370 T2995 T2996 arg1Of they,provide
R2371 T2996 T2994 arg2Of provide,because
R2372 T2999 T2996 arg2Of source,provide
R2373 T2999 T2997 arg1Of source,a
R2374 T2999 T2998 arg1Of source,reliable
R2375 T2999 T3000 arg1Of source,of
R2376 T3003 T3000 arg2Of cells,of
R2377 T3003 T3001 arg1Of cells,CD8+
R2378 T3003 T3002 arg1Of cells,T
R2379 T3003 T3004 arg1Of cells,that
R2380 T3003 T3005 arg1Of cells,are
R2381 T3003 T3007 arg1Of cells,naive
R2382 T3007 T3005 arg2Of naive,are
R2383 T3007 T3006 arg1Of naive,truly
R2384 T3008 T3009 arg1Of ;,however
R2385 T3011 T3012 arg1Of we,chose
R2386 T3011 T3015 arg1Of we,stimulate
R2387 T3012 T3008 arg2Of chose,;
R2388 T3012 T3010 arg1Of chose,","
R2389 T3012 T3023 arg1Of chose,as
R2390 T3015 T3012 arg2Of stimulate,chose
R2391 T3015 T3013 arg1Of stimulate,not
R2392 T3015 T3014 arg1Of stimulate,to
R2393 T3015 T3019 arg1Of stimulate,in
R2394 T3016 T3015 arg2Of cells,stimulate
R2395 T3016 T3017 arg1Of cells,with
R2396 T3018 T3017 arg2Of antigen,with
R2397 T3021 T3019 arg2Of experiments,in
R2398 T3021 T3020 arg1Of experiments,most
R2399 T3023 T3022 arg1Of as,so
R2400 T3025 T3023 arg2Of avoid,as
R2401 T3025 T3024 arg1Of avoid,to
R2402 T3026 T3025 arg2Of contamination,avoid
R2403 T3026 T3027 arg1Of contamination,with
R2404 T3028 T3029 arg1Of proteins,and
R2405 T3029 T3027 arg2Of and,with
R2406 T3029 T3032 arg2Of and,derived
R2407 T3031 T3029 arg2Of acids,and
R2408 T3031 T3030 arg1Of acids,nucleic
R2409 T3032 T3033 arg1Of derived,from
R2410 T3034 T3033 arg2Of APCs,from
R2411 T3035 T3036 arg1Of There,were
R2412 T3036 T3043 arg1Of were,during
R2413 T3036 T3051 arg1Of were,and
R2414 T3038 T3037 arg1Of minor,only
R2415 T3039 T3036 arg2Of differences,were
R2416 T3039 T3038 arg1Of differences,minor
R2417 T3039 T3040 arg1Of differences,in
R2418 T3042 T3040 arg2Of expression,in
R2419 T3042 T3041 arg1Of expression,gene
R2420 T3044 T3043 arg2Of differentiation,during
R2421 T3044 T3045 arg2Of differentiation,induced
R2422 T3047 T3045 arg1Of antigen/APC,induced
R2423 T3047 T3046 arg2Of antigen/APC,by
R2424 T3047 T3048 arg1Of antigen/APC,versus
R2425 T3049 T3048 arg2Of anti-CD3/anti-CD28,versus
R2426 T3051 T3050 arg1Of and,","
R2427 T3054 T3052 arg1Of conclusions,the
R2428 T3054 T3053 arg1Of conclusions,major
R2429 T3054 T3055 arg2Of conclusions,presented
R2430 T3054 T3059 arg1Of conclusions,are
R2431 T3055 T3056 arg1Of presented,in
R2432 T3058 T3056 arg2Of report,in
R2433 T3058 T3057 arg1Of report,this
R2434 T3059 T3051 arg2Of are,and
R2435 T3059 T3062 arg1Of are,for
R2436 T3061 T3059 arg2Of same,are
R2437 T3061 T3060 arg1Of same,the
R2438 T3065 T3062 arg2Of conditions,for
R2439 T3065 T3063 arg1Of conditions,both
R2440 T3065 T3064 arg1Of conditions,activating
R2441 T3069 T3066 arg2Of conditions,Under
R2442 T3069 T3067 arg1Of conditions,our
R2443 T3069 T3068 arg1Of conditions,culture
R2444 T3074 T3071 arg2Of cells,activated
R2445 T3074 T3072 arg1Of cells,CD8+
R2446 T3074 T3073 arg1Of cells,T
R2447 T3074 T3075 arg1Of cells,expanded
R2448 T3074 T3078 arg2Of cells,accumulated
R2449 T3075 T3076 arg1Of expanded,exponentially
R2450 T3075 T3077 arg1Of expanded,and
R2451 T3077 T3066 arg1Of and,Under
R2452 T3077 T3070 arg1Of and,","
R2453 T3078 T3077 arg2Of accumulated,and
R2454 T3078 T3079 arg1Of accumulated,for
R2455 T3081 T3080 arg1Of 8,>
R2456 T3082 T3079 arg2Of d,for
R2457 T3082 T3081 arg1Of d,8
R2458 T3083 T3084 arg1Of We,limited
R2459 T3084 T3087 arg1Of limited,to
R2460 T3084 T3092 arg1Of limited,after
R2461 T3086 T3084 arg2Of analysis,limited
R2462 T3086 T3085 arg1Of analysis,our
R2463 T3091 T3087 arg2Of d,to
R2464 T3091 T3088 arg1Of d,the
R2465 T3091 T3089 arg1Of d,first
R2466 T3091 T3090 arg1Of d,6–8
R2467 T3093 T3092 arg2Of activation,after
R2468 T3093 T3094 arg1Of activation,","
R2469 T3096 T3094 arg2Of period,","
R2470 T3096 T3095 arg1Of period,a
R2471 T3096 T3097 arg1Of period,that
R2472 T3096 T3098 arg1Of period,coincides
R2473 T3098 T3099 arg1Of coincides,with
R2474 T3098 T3106 arg1Of coincides,after
R2475 T3101 T3099 arg2Of expansion,with
R2476 T3101 T3100 arg1Of expansion,clonal
R2477 T3101 T3102 arg1Of expansion,of
R2478 T3105 T3102 arg2Of cells,of
R2479 T3105 T3103 arg1Of cells,CD8+
R2480 T3105 T3104 arg1Of cells,T
R2481 T3107 T3106 arg2Of activation,after
R2482 T3107 T3109 arg1Of activation,vivo
R2483 T3109 T3108 arg1Of vivo,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2702 0-1 DT denotes A
T2703 2-6 NN denotes cell
T2704 7-14 NN denotes culture
T2705 15-21 NN denotes system
T2706 22-24 TO denotes to
T2707 25-32 VB denotes monitor
T2708 33-41 NN denotes effector
T2709 42-45 NNP denotes CTL
T2710 46-61 NN denotes differentiation
T2711 62-64 PRP denotes We
T2712 65-69 VBD denotes used
T2713 70-71 DT denotes a
T2714 72-78 JJ denotes simple
T2715 79-83 NN denotes cell
T2716 84-91 NN denotes culture
T2717 92-98 NN denotes system
T2718 99-101 TO denotes to
T2719 102-109 VB denotes examine
T2720 110-113 DT denotes the
T2721 114-122 NNS denotes kinetics
T2722 123-125 IN denotes of
T2723 126-134 NN denotes effector
T2724 135-139 NN denotes gene
T2725 140-150 NN denotes expression
T2726 151-157 IN denotes during
T2727 158-161 NNP denotes CD8
T2728 161-162 NNP denotes +
T2729 163-164 NNP denotes T
T2730 165-169 NN denotes cell
T2731 170-185 NN denotes differentiation
T2732 185-186 . denotes .
T2733 187-192 JJ denotes Naive
T2734 193-196 NNP denotes CD8
T2735 196-197 CD denotes +
T2736 198-199 NNP denotes T
T2737 200-205 NNS denotes cells
T2738 206-210 IN denotes from
T2739 211-214 NNP denotes P14
T2740 215-218 NNP denotes TCR
T2741 219-229 JJ denotes transgenic
T2742 230-234 NNS denotes mice
T2743 235-239 VBD denotes were
T2744 240-249 VBN denotes activated
T2745 250-253 IN denotes for
T2746 254-255 CD denotes 2
T2747 256-257 LS denotes d
T2748 258-262 IN denotes with
T2749 263-271 JJ denotes anti-CD3
T2750 272-275 CC denotes and
T2751 276-285 JJ denotes anti-CD28
T2752 286-288 CC denotes or
T2753 289-293 IN denotes with
T2754 294-301 JJ denotes splenic
T2755 302-306 NNS denotes APCs
T2756 307-309 IN denotes in
T2757 310-313 DT denotes the
T2758 314-322 NN denotes presence
T2759 323-325 IN denotes of
T2760 326-330 JJ denotes Gp33
T2761 331-338 NN denotes peptide
T2762 338-339 , denotes ,
T2763 340-343 CC denotes and
T2764 344-348 VBD denotes were
T2765 349-357 VBN denotes cultured
T2766 358-360 IN denotes in
T2767 361-366 NNS denotes media
T2768 367-377 VBG denotes containing
T2769 378-381 CD denotes 100
T2770 382-386 NNP denotes U/ml
T2771 387-389 IN denotes of
T2772 390-401 JJ denotes recombinant
T2773 402-407 JJ denotes human
T2774 408-412 NN denotes IL-2
T2775 413-414 -LRB- denotes (
T2776 414-420 NN denotes rhIL-2
T2777 420-421 -RRB- denotes )
T2778 421-422 . denotes .
T2779 423-425 PRP denotes We
T2780 426-430 VBD denotes used
T2781 431-434 NNP denotes TCR
T2782 435-445 JJ denotes transgenic
T2783 446-450 NNS denotes mice
T2784 451-454 IN denotes for
T2785 455-460 DT denotes these
T2786 461-472 NNS denotes experiments
T2787 473-480 IN denotes because
T2788 481-485 PRP denotes they
T2789 486-493 VBP denotes provide
T2790 494-495 DT denotes a
T2791 496-504 JJ denotes reliable
T2792 505-511 NN denotes source
T2793 512-514 IN denotes of
T2794 515-518 CD denotes CD8
T2795 518-519 CD denotes +
T2796 520-521 NNP denotes T
T2797 522-527 NNS denotes cells
T2798 528-532 WDT denotes that
T2799 533-536 VBP denotes are
T2800 537-542 RB denotes truly
T2801 543-548 JJ denotes naive
T2802 548-549 : denotes ;
T2803 550-557 RB denotes however
T2804 557-558 , denotes ,
T2805 559-561 PRP denotes we
T2806 562-567 VBD denotes chose
T2807 568-571 RB denotes not
T2808 572-574 TO denotes to
T2809 575-584 VB denotes stimulate
T2810 585-590 NNS denotes cells
T2811 591-595 IN denotes with
T2812 596-603 NN denotes antigen
T2813 604-606 IN denotes in
T2814 607-611 JJS denotes most
T2815 612-623 NNS denotes experiments
T2816 624-626 RB denotes so
T2817 627-629 IN denotes as
T2818 630-632 TO denotes to
T2819 633-638 VB denotes avoid
T2820 639-652 NN denotes contamination
T2821 653-657 IN denotes with
T2822 658-666 NNS denotes proteins
T2823 667-670 CC denotes and
T2824 671-678 JJ denotes nucleic
T2825 679-684 NNS denotes acids
T2826 685-692 VBN denotes derived
T2827 693-697 IN denotes from
T2828 698-702 NNS denotes APCs
T2829 702-703 . denotes .
T2830 704-709 EX denotes There
T2831 710-714 VBD denotes were
T2832 715-719 RB denotes only
T2833 720-725 JJ denotes minor
T2834 726-737 NNS denotes differences
T2835 738-740 IN denotes in
T2836 741-745 NN denotes gene
T2837 746-756 NN denotes expression
T2838 757-763 IN denotes during
T2839 764-779 NN denotes differentiation
T2840 780-787 VBN denotes induced
T2841 788-790 IN denotes by
T2842 791-802 NNP denotes antigen/APC
T2843 803-809 CC denotes versus
T2844 810-818 JJ denotes anti-CD3
T2845 818-819 NN denotes /
T2846 819-828 NN denotes anti-CD28
T2847 828-829 , denotes ,
T2848 830-833 CC denotes and
T2849 834-837 DT denotes the
T2850 838-843 JJ denotes major
T2851 844-855 NNS denotes conclusions
T2852 856-865 VBN denotes presented
T2853 866-868 IN denotes in
T2854 869-873 DT denotes this
T2855 874-880 NN denotes report
T2856 881-884 VBP denotes are
T2857 885-888 DT denotes the
T2858 889-893 JJ denotes same
T2859 894-897 IN denotes for
T2860 898-902 DT denotes both
T2861 903-913 VBG denotes activating
T2862 914-924 NNS denotes conditions
T2863 924-925 . denotes .
T2864 926-931 IN denotes Under
T2865 932-935 PRP$ denotes our
T2866 936-943 NN denotes culture
T2867 944-954 NNS denotes conditions
T2868 954-955 , denotes ,
T2869 956-965 VBN denotes activated
T2870 966-969 NNP denotes CD8
T2871 969-970 CD denotes +
T2872 971-972 NNP denotes T
T2873 973-978 NNS denotes cells
T2874 979-987 VBD denotes expanded
T2875 988-1001 RB denotes exponentially
T2876 1002-1005 CC denotes and
T2877 1006-1017 VBN denotes accumulated
T2878 1018-1021 IN denotes for
T2879 1022-1023 NN denotes >
T2880 1023-1024 CD denotes 8
T2881 1025-1026 LS denotes d
T2882 1026-1027 . denotes .
T2883 1028-1030 PRP denotes We
T2884 1031-1038 VBD denotes limited
T2885 1039-1042 PRP$ denotes our
T2886 1043-1051 NN denotes analysis
T2887 1052-1054 TO denotes to
T2888 1055-1058 DT denotes the
T2889 1059-1064 JJ denotes first
T2890 1065-1066 CD denotes 6
T2891 1067-1068 CD denotes 8
T2892 1069-1070 LS denotes d
T2893 1071-1076 IN denotes after
T2894 1077-1087 NN denotes activation
T2895 1087-1088 , denotes ,
T2896 1089-1090 DT denotes a
T2897 1091-1097 NN denotes period
T2898 1098-1102 WDT denotes that
T2899 1103-1112 VBZ denotes coincides
T2900 1113-1117 IN denotes with
T2901 1118-1124 JJ denotes clonal
T2902 1125-1134 NN denotes expansion
T2903 1135-1137 IN denotes of
T2904 1138-1141 CD denotes CD8
T2905 1141-1142 CD denotes +
T2906 1143-1144 NNP denotes T
T2907 1145-1150 NNS denotes cells
T2908 1151-1156 IN denotes after
T2909 1157-1167 NN denotes activation
T2910 1168-1170 IN denotes in
T2911 1171-1175 NN denotes vivo
T2912 1175-1176 . denotes .
R2075 T2702 T2705 det A,system
R2076 T2703 T2704 compound cell,culture
R2077 T2704 T2705 compound culture,system
R2078 T2705 T2712 advcl system,used
R2079 T2706 T2707 aux to,monitor
R2080 T2707 T2705 acl monitor,system
R2081 T2708 T2709 compound effector,CTL
R2082 T2709 T2710 compound CTL,differentiation
R2083 T2710 T2707 dobj differentiation,monitor
R2084 T2711 T2712 nsubj We,used
R2085 T2712 T2712 ROOT used,used
R2086 T2713 T2717 det a,system
R2087 T2714 T2717 amod simple,system
R2088 T2715 T2716 compound cell,culture
R2089 T2716 T2717 compound culture,system
R2090 T2717 T2712 dobj system,used
R2091 T2718 T2719 aux to,examine
R2092 T2719 T2712 xcomp examine,used
R2093 T2720 T2721 det the,kinetics
R2094 T2721 T2719 dobj kinetics,examine
R2095 T2722 T2721 prep of,kinetics
R2096 T2723 T2725 amod effector,expression
R2097 T2724 T2725 compound gene,expression
R2098 T2725 T2722 pobj expression,of
R2099 T2726 T2719 prep during,examine
R2100 T2727 T2731 compound CD8,differentiation
R2101 T2728 T2731 compound +,differentiation
R2102 T2729 T2730 compound T,cell
R2103 T2730 T2731 compound cell,differentiation
R2104 T2731 T2726 pobj differentiation,during
R2105 T2732 T2712 punct .,used
R2106 T2733 T2737 amod Naive,cells
R2107 T2734 T2737 nmod CD8,cells
R2108 T2735 T2737 nummod +,cells
R2109 T2736 T2737 compound T,cells
R2110 T2737 T2744 nsubjpass cells,activated
R2111 T2738 T2737 prep from,cells
R2112 T2739 T2740 nmod P14,TCR
R2113 T2740 T2742 nmod TCR,mice
R2114 T2741 T2742 amod transgenic,mice
R2115 T2742 T2738 pobj mice,from
R2116 T2743 T2744 auxpass were,activated
R2117 T2744 T2744 ROOT activated,activated
R2118 T2745 T2744 prep for,activated
R2119 T2746 T2747 nummod 2,d
R2120 T2747 T2745 pobj d,for
R2121 T2748 T2747 prep with,d
R2122 T2749 T2748 pobj anti-CD3,with
R2123 T2750 T2749 cc and,anti-CD3
R2124 T2751 T2749 conj anti-CD28,anti-CD3
R2125 T2752 T2751 cc or,anti-CD28
R2126 T2753 T2751 conj with,anti-CD28
R2127 T2754 T2755 amod splenic,APCs
R2128 T2755 T2753 pobj APCs,with
R2129 T2756 T2755 prep in,APCs
R2130 T2757 T2758 det the,presence
R2131 T2758 T2756 pobj presence,in
R2132 T2759 T2758 prep of,presence
R2133 T2760 T2761 amod Gp33,peptide
R2134 T2761 T2759 pobj peptide,of
R2135 T2762 T2744 punct ",",activated
R2136 T2763 T2744 cc and,activated
R2137 T2764 T2765 auxpass were,cultured
R2138 T2765 T2744 conj cultured,activated
R2139 T2766 T2765 prep in,cultured
R2140 T2767 T2766 pobj media,in
R2141 T2768 T2767 acl containing,media
R2142 T2769 T2770 nummod 100,U/ml
R2143 T2770 T2768 dobj U/ml,containing
R2144 T2771 T2770 prep of,U/ml
R2145 T2772 T2774 amod recombinant,IL-2
R2146 T2773 T2774 amod human,IL-2
R2147 T2774 T2771 pobj IL-2,of
R2148 T2775 T2776 punct (,rhIL-2
R2149 T2776 T2774 appos rhIL-2,IL-2
R2150 T2777 T2765 punct ),cultured
R2151 T2778 T2744 punct .,activated
R2152 T2779 T2780 nsubj We,used
R2153 T2780 T2806 ccomp used,chose
R2154 T2781 T2783 nmod TCR,mice
R2155 T2782 T2783 amod transgenic,mice
R2156 T2783 T2780 dobj mice,used
R2157 T2784 T2780 prep for,used
R2158 T2785 T2786 det these,experiments
R2159 T2786 T2784 pobj experiments,for
R2160 T2787 T2789 mark because,provide
R2161 T2788 T2789 nsubj they,provide
R2162 T2789 T2780 advcl provide,used
R2163 T2790 T2792 det a,source
R2164 T2791 T2792 amod reliable,source
R2165 T2792 T2789 dobj source,provide
R2166 T2793 T2792 prep of,source
R2167 T2794 T2797 nummod CD8,cells
R2168 T2795 T2797 nummod +,cells
R2169 T2796 T2797 compound T,cells
R2170 T2797 T2793 pobj cells,of
R2171 T2798 T2799 nsubj that,are
R2172 T2799 T2797 relcl are,cells
R2173 T2800 T2801 advmod truly,naive
R2174 T2801 T2799 acomp naive,are
R2175 T2802 T2806 punct ;,chose
R2176 T2803 T2806 advmod however,chose
R2177 T2804 T2806 punct ",",chose
R2178 T2805 T2806 nsubj we,chose
R2179 T2806 T2806 ROOT chose,chose
R2180 T2807 T2809 neg not,stimulate
R2181 T2808 T2809 aux to,stimulate
R2182 T2809 T2806 xcomp stimulate,chose
R2183 T2810 T2809 dobj cells,stimulate
R2184 T2811 T2809 prep with,stimulate
R2185 T2812 T2811 pobj antigen,with
R2186 T2813 T2809 prep in,stimulate
R2187 T2814 T2815 amod most,experiments
R2188 T2815 T2813 pobj experiments,in
R2189 T2816 T2819 mark so,avoid
R2190 T2817 T2819 mark as,avoid
R2191 T2818 T2819 aux to,avoid
R2192 T2819 T2809 advcl avoid,stimulate
R2193 T2820 T2819 dobj contamination,avoid
R2194 T2821 T2820 prep with,contamination
R2195 T2822 T2821 pobj proteins,with
R2196 T2823 T2822 cc and,proteins
R2197 T2824 T2825 amod nucleic,acids
R2198 T2825 T2822 conj acids,proteins
R2199 T2826 T2822 acl derived,proteins
R2200 T2827 T2826 prep from,derived
R2201 T2828 T2827 pobj APCs,from
R2202 T2829 T2806 punct .,chose
R2203 T2830 T2831 expl There,were
R2204 T2831 T2856 ccomp were,are
R2205 T2832 T2834 advmod only,differences
R2206 T2833 T2834 amod minor,differences
R2207 T2834 T2831 attr differences,were
R2208 T2835 T2834 prep in,differences
R2209 T2836 T2837 compound gene,expression
R2210 T2837 T2835 pobj expression,in
R2211 T2838 T2834 prep during,differences
R2212 T2839 T2838 pobj differentiation,during
R2213 T2840 T2839 acl induced,differentiation
R2214 T2841 T2840 agent by,induced
R2215 T2842 T2841 pobj antigen/APC,by
R2216 T2843 T2842 cc versus,antigen/APC
R2217 T2844 T2846 amod anti-CD3,anti-CD28
R2218 T2845 T2846 compound /,anti-CD28
R2219 T2846 T2842 conj anti-CD28,antigen/APC
R2220 T2847 T2846 punct ",",anti-CD28
R2221 T2848 T2846 cc and,anti-CD28
R2222 T2849 T2851 det the,conclusions
R2223 T2850 T2851 amod major,conclusions
R2224 T2851 T2846 conj conclusions,anti-CD28
R2225 T2852 T2851 acl presented,conclusions
R2226 T2853 T2852 prep in,presented
R2227 T2854 T2855 det this,report
R2228 T2855 T2853 pobj report,in
R2229 T2856 T2856 ROOT are,are
R2230 T2857 T2858 det the,same
R2231 T2858 T2856 attr same,are
R2232 T2859 T2856 prep for,are
R2233 T2860 T2862 det both,conditions
R2234 T2861 T2862 amod activating,conditions
R2235 T2862 T2859 pobj conditions,for
R2236 T2863 T2856 punct .,are
R2237 T2864 T2874 prep Under,expanded
R2238 T2865 T2867 poss our,conditions
R2239 T2866 T2867 compound culture,conditions
R2240 T2867 T2864 pobj conditions,Under
R2241 T2868 T2869 punct ",",activated
R2242 T2869 T2873 amod activated,cells
R2243 T2870 T2873 compound CD8,cells
R2244 T2871 T2873 nummod +,cells
R2245 T2872 T2873 compound T,cells
R2246 T2873 T2874 nsubj cells,expanded
R2247 T2874 T2874 ROOT expanded,expanded
R2248 T2875 T2874 advmod exponentially,expanded
R2249 T2876 T2874 cc and,expanded
R2250 T2877 T2874 conj accumulated,expanded
R2251 T2878 T2877 prep for,accumulated
R2252 T2879 T2878 pobj >,for
R2253 T2880 T2879 nummod 8,>
R2254 T2881 T2881 ROOT d,d
R2255 T2882 T2874 punct .,expanded
R2256 T2883 T2884 nsubj We,limited
R2257 T2884 T2884 ROOT limited,limited
R2258 T2885 T2886 poss our,analysis
R2259 T2886 T2884 dobj analysis,limited
R2260 T2887 T2884 prep to,limited
R2261 T2888 T2890 det the,6
R2262 T2889 T2890 amod first,6
R2263 T2890 T2892 dep 6,d
R2264 T2891 T2890 appos 8,6
R2265 T2892 T2887 pobj d,to
R2266 T2893 T2884 prep after,limited
R2267 T2894 T2893 pobj activation,after
R2268 T2895 T2884 punct ",",limited
R2269 T2896 T2897 det a,period
R2270 T2897 T2884 dobj period,limited
R2271 T2898 T2899 nsubj that,coincides
R2272 T2899 T2897 relcl coincides,period
R2273 T2900 T2899 prep with,coincides
R2274 T2901 T2902 amod clonal,expansion
R2275 T2902 T2900 pobj expansion,with
R2276 T2903 T2902 prep of,expansion
R2277 T2904 T2907 nummod CD8,cells
R2278 T2905 T2907 nummod +,cells
R2279 T2906 T2907 compound T,cells
R2280 T2907 T2903 pobj cells,of
R2281 T2908 T2902 prep after,expansion
R2282 T2909 T2908 pobj activation,after
R2283 T2910 T2909 prep in,activation
R2284 T2911 T2910 pobj vivo,in
R2285 T2912 T2884 punct .,limited

GO-BP

Id Subject Object Predicate Lexical cue
T2690 135-150 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T2691 741-756 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T2692 165-185 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation
T2693 215-218 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T2694 431-434 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR

GO-MF

Id Subject Object Predicate Lexical cue
T3138 408-412 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T3144 585-590 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3145 973-978 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3146 1145-1150 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3147 215-218 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T3148 431-434 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T3149 799-802 http://purl.obolibrary.org/obo/GO_0005680 denotes APC
T3139 2-6 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3140 79-83 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3141 165-169 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3142 200-205 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3143 522-527 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2695 0-61 Sentence denotes A cell culture system to monitor effector CTL differentiation
T2696 62-186 Sentence denotes We used a simple cell culture system to examine the kinetics of effector gene expression during CD8+ T cell differentiation.
T2697 187-422 Sentence denotes Naive CD8+ T cells from P14 TCR transgenic mice were activated for 2 d with anti-CD3 and anti-CD28 or with splenic APCs in the presence of Gp33 peptide, and were cultured in media containing 100 U/ml of recombinant human IL-2 (rhIL-2).
T2698 423-703 Sentence denotes We used TCR transgenic mice for these experiments because they provide a reliable source of CD8+ T cells that are truly naive; however, we chose not to stimulate cells with antigen in most experiments so as to avoid contamination with proteins and nucleic acids derived from APCs.
T2699 704-925 Sentence denotes There were only minor differences in gene expression during differentiation induced by antigen/APC versus anti-CD3/anti-CD28, and the major conclusions presented in this report are the same for both activating conditions.
T2700 926-1027 Sentence denotes Under our culture conditions, activated CD8+ T cells expanded exponentially and accumulated for >8 d.
T2701 1028-1176 Sentence denotes We limited our analysis to the first 6–8 d after activation, a period that coincides with clonal expansion of CD8+ T cells after activation in vivo.
T27 0-61 Sentence denotes A cell culture system to monitor effector CTL differentiation
T28 62-186 Sentence denotes We used a simple cell culture system to examine the kinetics of effector gene expression during CD8+ T cell differentiation.
T29 187-422 Sentence denotes Naive CD8+ T cells from P14 TCR transgenic mice were activated for 2 d with anti-CD3 and anti-CD28 or with splenic APCs in the presence of Gp33 peptide, and were cultured in media containing 100 U/ml of recombinant human IL-2 (rhIL-2).
T30 423-703 Sentence denotes We used TCR transgenic mice for these experiments because they provide a reliable source of CD8+ T cells that are truly naive; however, we chose not to stimulate cells with antigen in most experiments so as to avoid contamination with proteins and nucleic acids derived from APCs.
T31 704-925 Sentence denotes There were only minor differences in gene expression during differentiation induced by antigen/APC versus anti-CD3/anti-CD28, and the major conclusions presented in this report are the same for both activating conditions.
T32 926-1027 Sentence denotes Under our culture conditions, activated CD8+ T cells expanded exponentially and accumulated for >8 d.
T33 1028-1176 Sentence denotes We limited our analysis to the first 6–8 d after activation, a period that coincides with clonal expansion of CD8+ T cells after activation in vivo.

events-check-again

Id Subject Object Predicate Lexical cue
T3205 158-161 Protein denotes CD8
T3206 193-196 Protein denotes CD8
T3207 268-271 Protein denotes CD3
T3208 281-285 Protein denotes CD28
T3209 408-412 Protein denotes IL-2
T3210 414-420 Protein denotes rhIL-2
T3211 515-518 Protein denotes CD8
T3212 815-818 Protein denotes CD3
T3213 824-828 Protein denotes CD28
T3214 966-969 Protein denotes CD8
T3215 1138-1141 Protein denotes CD8
R2489 T3210 T3209 equivalentTo rhIL-2,IL-2

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3216 158-162 Protein denotes CD8+
T3217 193-197 Protein denotes CD8+
T3218 211-214 Protein denotes P14
T3219 263-271 Protein denotes anti-CD3
T3220 276-285 Protein denotes anti-CD28
T3221 326-338 Protein denotes Gp33 peptide
T3222 390-412 Protein denotes recombinant human IL-2
T3223 414-420 Protein denotes rhIL-2
T3224 515-519 Protein denotes CD8+
T3225 815-818 Protein denotes CD3
T3226 824-828 Protein denotes CD28
T3227 966-970 Protein denotes CD8+
T3228 1138-1142 Protein denotes CD8+

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2679 158-161 Protein denotes CD8
T2680 193-196 Protein denotes CD8
T2681 268-271 Protein denotes CD3
T2682 281-285 Protein denotes CD28
T2683 408-412 Protein denotes IL-2
T2684 414-420 Protein denotes rhIL-2
T2685 515-518 Protein denotes CD8
T2686 815-818 Protein denotes CD3
T2687 824-828 Protein denotes CD28
T2688 966-969 Protein denotes CD8
T2689 1138-1141 Protein denotes CD8
R2074 T2684 T2683 equivalentTo rhIL-2,IL-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3110 158-161 P01732 denotes CD8
T3111 158-161 P10966 denotes CD8
T3112 193-196 P01732 denotes CD8
T3113 193-196 P10966 denotes CD8
T3114 268-271 P04234 denotes CD3
T3115 268-271 P20963 denotes CD3
T3116 268-271 P09693 denotes CD3
T3117 268-271 P07766 denotes CD3
T3118 281-285 P10747 denotes CD28
T3119 408-412 P60568 denotes IL-2
T3120 515-518 P01732 denotes CD8
T3121 515-518 P10966 denotes CD8
T3122 815-818 P20963 denotes CD3
T3123 815-818 P04234 denotes CD3
T3124 815-818 P09693 denotes CD3
T3125 815-818 P07766 denotes CD3
T3126 824-828 P10747 denotes CD28
T3127 966-969 P10966 denotes CD8
T3128 966-969 P01732 denotes CD8
T3129 1138-1141 P01732 denotes CD8
T3130 1138-1141 P10966 denotes CD8

test2

Id Subject Object Predicate Lexical cue
T2668 158-161 Protein denotes CD8
T2669 193-196 Protein denotes CD8
T2670 268-271 Protein denotes CD3
T2671 281-285 Protein denotes CD28
T2672 408-412 Protein denotes IL-2
T2673 414-420 Protein denotes rhIL-2
T2674 515-518 Protein denotes CD8
T2675 815-818 Protein denotes CD3
T2676 824-828 Protein denotes CD28
T2677 966-969 Protein denotes CD8
T2678 1138-1141 Protein denotes CD8
R2073 T2673 T2672 equivalentTo rhIL-2,IL-2