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PMC:2626671 / 3704-3878 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1909 0-5 NN denotes Runx3
T1910 6-8 VB denotes is
T1911 9-17 VB denotes required
T1912 18-21 IN denotes for
T1913 22-27 NN denotes Eomes
T1914 28-31 CC denotes and
T1915 32-40 NN denotes perforin
T1916 41-51 NN denotes expression
T1917 51-52 -COMMA- denotes ,
T1918 53-56 CC denotes and
T1919 57-61 DT denotes both
T1920 62-67 NN denotes Eomes
T1921 68-71 CC denotes and
T1922 72-77 NN denotes Runx3
T1923 78-82 VB denotes bind
T1924 83-85 IN denotes at
T1925 86-100 NN denotes the Prf1 locus
T1926 100-101 -COLON- denotes ;
T1927 102-104 IN denotes in
T1928 105-113 NN denotes contrast
T1929 113-114 -COMMA- denotes ,
T1930 115-123 NN denotes perforin
T1931 124-134 NN denotes expression
T1932 135-137 VB denotes is
T1933 138-148 JJ denotes unaffected
T1934 149-151 IN denotes in
T1935 152-167 JJ denotes T-bet–deficient
T1936 168-173 NN denotes cells
R1630 T1909 T1910 arg1Of Runx3,is
R1631 T1909 T1911 arg2Of Runx3,required
R1633 T1911 T1910 arg2Of required,is
R1634 T1911 T1912 arg1Of required,for
R1635 T1911 T1918 arg1Of required,and
R1636 T1913 T1914 arg1Of Eomes,and
R1638 T1914 T1912 arg2Of and,for
R1639 T1916 T1914 arg2Of expression,and
R1640 T1916 T1915 arg1Of expression,perforin
R1642 T1918 T1917 arg1Of and,","
R1645 T1918 T1926 arg1Of and,;
R1646 T1920 T1921 arg1Of Eomes,and
R1647 T1921 T1919 arg1Of and,both
R1648 T1921 T1923 arg1Of and,bind
R1649 T1922 T1921 arg2Of Runx3,and
R1650 T1923 T1918 arg2Of bind,and
R1651 T1923 T1924 arg1Of bind,at
R1652 T1925 T1924 arg2Of the Prf1 locus,at
R1655 T1928 T1927 arg2Of contrast,in
R1657 T1931 T1930 arg1Of expression,perforin
R1658 T1931 T1932 arg1Of expression,is
R1659 T1931 T1933 arg1Of expression,unaffected
R1661 T1932 T1926 arg2Of is,;
R1662 T1932 T1927 arg1Of is,in
R1663 T1932 T1929 arg1Of is,","
R1664 T1932 T1934 arg1Of is,in
R1665 T1933 T1932 arg2Of unaffected,is
R1667 T1936 T1934 arg2Of cells,in
R1669 T1936 T1935 arg1Of cells,T-bet–deficient

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1317 0-5 NN denotes Runx3
T1318 6-8 VBZ denotes is
T1319 9-17 VBN denotes required
T1320 18-21 IN denotes for
T1321 22-27 NNP denotes Eomes
T1322 28-31 CC denotes and
T1323 32-40 JJ denotes perforin
T1324 41-51 NN denotes expression
T1325 51-52 , denotes ,
T1326 53-56 CC denotes and
T1327 57-61 DT denotes both
T1328 62-67 NNPS denotes Eomes
T1329 68-71 CC denotes and
T1330 72-77 NNP denotes Runx3
T1331 78-82 NN denotes bind
T1332 83-85 IN denotes at
T1333 86-100 NN denotes the Prf1 locus
T1334 100-101 : denotes ;
T1335 102-104 IN denotes in
T1336 105-113 NN denotes contrast
T1337 113-114 , denotes ,
T1338 115-123 NN denotes perforin
T1339 124-134 NN denotes expression
T1340 135-137 VBZ denotes is
T1341 138-148 JJ denotes unaffected
T1342 149-151 IN denotes in
T1343 152-157 NNP denotes T-bet
T1344 158-167 JJ denotes deficient
T1345 168-173 NNS denotes cells
T1346 173-174 . denotes .
R1083 T1317 T1319 nsubjpass Runx3,required
R1084 T1318 T1319 auxpass is,required
R1085 T1319 T1319 ROOT required,required
R1086 T1320 T1319 prep for,required
R1087 T1321 T1320 pobj Eomes,for
R1088 T1322 T1321 cc and,Eomes
R1089 T1323 T1324 amod perforin,expression
R1090 T1324 T1321 conj expression,Eomes
R1091 T1325 T1319 punct ",",required
R1092 T1326 T1319 cc and,required
R1093 T1327 T1328 det both,Eomes
R1094 T1328 T1331 nsubj Eomes,bind
R1095 T1329 T1328 cc and,Eomes
R1096 T1330 T1328 conj Runx3,Eomes
R1097 T1331 T1341 nsubjpass bind,unaffected
R1098 T1332 T1331 prep at,bind
R1099 T1333 T1332 pobj the Prf1 locus,at
R1100 T1334 T1340 punct ;,is
R1101 T1335 T1340 prep in,is
R1102 T1336 T1335 pobj contrast,in
R1103 T1337 T1340 punct ",",is
R1104 T1338 T1339 amod perforin,expression
R1105 T1339 T1340 nsubj expression,is
R1106 T1340 T1341 auxpass is,unaffected
R1107 T1341 T1319 conj unaffected,required
R1108 T1342 T1341 prep in,unaffected
R1109 T1343 T1342 pobj T-bet,in
R1110 T1344 T1345 amod deficient,cells
R1111 T1345 T1341 dep cells,unaffected
R1112 T1346 T1341 punct .,unaffected

GO-CC

Id Subject Object Predicate Lexical cue
T2087 168-173 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T839 0-174 Sentence denotes Runx3 is required for Eomes and perforin expression, and both Eomes and Runx3 bind at the Prf1 locus; in contrast, perforin expression is unaffected in T-bet–deficient cells.
T23 0-174 Sentence denotes Runx3 is required for Eomes and perforin expression, and both Eomes and Runx3 bind at the Prf1 locus; in contrast, perforin expression is unaffected in T-bet–deficient cells.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2614 0-5 Protein denotes Runx3
T2615 9-17 Positive_regulation denotes required
T2616 9-17 Positive_regulation denotes required
T2617 22-27 Protein denotes Eomes
T2618 32-40 Protein denotes perforin
T2619 41-51 Gene_expression denotes expression
T2620 41-51 Gene_expression denotes expression
T2621 62-67 Protein denotes Eomes
T2622 72-77 Protein denotes Runx3
T2623 78-82 Binding denotes bind
T2624 78-82 Binding denotes bind
T2625 90-94 Protein denotes Prf1
T2626 115-123 Protein denotes perforin
T2627 124-134 Gene_expression denotes expression
T2628 138-148 Regulation denotes unaffected true
T2629 152-157 Protein denotes T-bet
T2630 158-167 Negative_regulation denotes deficient
R2028 T2614 T2615 causeOf Runx3,required
R2032 T2614 T2616 causeOf Runx3,required
R2033 T2617 T2619 themeOf Eomes,expression
R2035 T2618 T2620 themeOf perforin,expression
R2038 T2619 T2615 themeOf expression,required
R2041 T2620 T2616 themeOf expression,required
R2042 T2621 T2623 themeOf Eomes,bind
R2043 T2622 T2624 themeOf Runx3,bind
R2044 T2625 T2623 themeOf Prf1,bind
R2045 T2629 T2630 themeOf T-bet,deficient
R2046 T2630 T2628 causeOf deficient,unaffected
R2050 T2625 T2624 themeOf Prf1,bind
R2051 T2626 T2627 themeOf perforin,expression
R2055 T2627 T2628 themeOf expression,unaffected

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1419 41-51 Gene_expression denotes expression
T1420 78-82 Binding denotes bind
T1421 78-82 Binding denotes bind
T1422 124-134 Gene_expression denotes expression
T1423 138-148 Regulation denotes unaffected true
T1424 158-167 Negative_regulation denotes deficient
T1475 0-5 Protein denotes Runx3
T1476 22-27 Protein denotes Eomes
T1478 32-40 Protein denotes perforin
T1479 62-67 Protein denotes Eomes
T1480 72-77 Protein denotes Runx3
T1481 90-94 Protein denotes Prf1
T1482 115-123 Protein denotes perforin
T1483 152-157 Protein denotes T-bet
T1416 9-17 Positive_regulation denotes required
T1417 41-51 Gene_expression denotes expression
T1418 9-17 Positive_regulation denotes required
R1211 T1482 T1422 themeOf perforin,expression
R1212 T1483 T1424 themeOf T-bet,deficient
R1171 T1417 T1416 themeOf expression,required
R1172 T1419 T1418 themeOf expression,required
R1173 T1422 T1423 themeOf expression,unaffected
R1174 T1424 T1423 causeOf deficient,unaffected
R1202 T1475 T1416 causeOf Runx3,required
R1203 T1475 T1418 causeOf Runx3,required
R1204 T1476 T1417 themeOf Eomes,expression
R1206 T1478 T1419 themeOf perforin,expression
R1207 T1479 T1420 themeOf Eomes,bind
R1208 T1480 T1421 themeOf Runx3,bind
R1209 T1481 T1420 themeOf Prf1,bind
R1210 T1481 T1421 themeOf Prf1,bind

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2044 0-5 Q13761 denotes Runx3
T2045 22-27 O95936 denotes Eomes
T2046 32-40 P14222 denotes perforin
T2047 62-67 O95936 denotes Eomes
T2048 72-77 Q13761 denotes Runx3
T2049 115-123 P14222 denotes perforin
T2050 152-157 Q9UL17 denotes T-bet

test2

Id Subject Object Predicate Lexical cue
T794 0-5 Protein denotes Runx3
T795 9-17 Positive_regulation denotes required
T796 22-27 Protein denotes Eomes
T797 32-40 Protein denotes perforin
T798 41-51 Gene_expression denotes expression
T799 62-67 Protein denotes Eomes
T800 72-77 Protein denotes Runx3
T801 78-82 Binding denotes bind
T802 86-100 Protein denotes the Prf1 locus
T803 115-123 Protein denotes perforin
T804 124-134 Gene_expression denotes expression
T805 152-157 Protein denotes T-bet
T806 158-167 Negative_regulation denotes deficient
R617 T794 T795 causeOf Runx3,required
R618 T796 T798 themeOf Eomes,expression
R619 T797 T798 themeOf perforin,expression
R620 T798 T795 themeOf expression,required
R621 T799 T801 themeOf Eomes,bind
R622 T800 T801 themeOf Runx3,bind
R623 T801 T795 themeOf bind,required
R624 T802 T801 themeOf the Prf1 locus,bind
R625 T803 T804 themeOf perforin,expression
R626 T805 T806 themeOf T-bet,deficient