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PMC:2626671 / 35023-35396 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18190 0-6 NN denotes Online
T18191 7-19 JJ denotes supplemental
T18192 20-28 NN denotes material
T18193 30-34 NN denotes Fig.
T18194 35-37 NN denotes S1
T18195 38-43 VB denotes shows
T18196 44-47 DT denotes the
T18197 48-64 NN denotes characterization
T18198 65-67 IN denotes of
T18199 68-78 JJ denotes peripheral
T18200 79-83 JJ denotes CD8+
T18201 84-85 NN denotes T
T18202 86-91 NN denotes cells
T18203 92-96 IN denotes from
T18204 97-105 NN denotes Runx3−/−
T18205 106-110 NN denotes mice
T18206 112-116 NN denotes Fig.
T18207 117-119 NN denotes S2
T18208 120-125 VB denotes shows
T18209 126-134 NN denotes effector
T18210 135-142 NN denotes protein
T18211 143-153 NN denotes expression
T18212 154-156 IN denotes by
T18213 157-162 NN denotes Runx3
T18214 163-165 NN denotes WT
T18215 166-169 CC denotes and
T18216 170-172 NN denotes KO
T18217 173-178 NN denotes cells
T18218 179-181 IN denotes at
T18219 182-185 NN denotes day
T18220 186-187 CD denotes 4
T18221 188-190 IN denotes of
T18222 191-193 FW denotes in
T18223 194-199 FW denotes vitro
T18224 200-207 NN denotes culture
T18225 209-215 NN denotes Primer
T18226 216-225 NN denotes sequences
T18227 226-230 VB denotes used
T18228 231-234 IN denotes for
T18229 235-239 NN denotes ChIP
T18230 240-251 NN denotes experiments
T18231 252-255 VB denotes are
T18232 256-261 VB denotes shown
T18233 262-264 IN denotes in
T18234 265-270 JJ denotes Table
T18235 271-273 NN denotes S1
T18236 275-281 NN denotes Online
T18237 282-294 JJ denotes supplemental
T18238 295-303 NN denotes material
T18239 304-306 VB denotes is
T18240 307-316 JJ denotes available
T18241 317-319 IN denotes at
T18242 320-324 NN denotes http
T18243 324-325 -COLON- denotes :
T18244 325-372 NN denotes //www.jem.org/cgi/content/full/jem.20081242/DC1
R14158 T18192 T18190 arg1Of material,Online
R14159 T18192 T18191 arg1Of material,supplemental
R14160 T18194 T18193 arg1Of S1,Fig.
R14161 T18194 T18195 arg1Of S1,shows
R14162 T18197 T18195 arg2Of characterization,shows
R14163 T18197 T18196 arg1Of characterization,the
R14164 T18197 T18198 arg1Of characterization,of
R14165 T18202 T18198 arg2Of cells,of
R14166 T18202 T18199 arg1Of cells,peripheral
R14167 T18202 T18200 arg1Of cells,CD8+
R14168 T18202 T18201 arg1Of cells,T
R14169 T18202 T18203 arg1Of cells,from
R14170 T18205 T18203 arg2Of mice,from
R14171 T18205 T18204 arg1Of mice,Runx3−/−
R14172 T18207 T18206 arg1Of S2,Fig.
R14173 T18207 T18208 arg1Of S2,shows
R14174 T18211 T18208 arg2Of expression,shows
R14175 T18211 T18209 arg1Of expression,effector
R14176 T18211 T18210 arg1Of expression,protein
R14177 T18211 T18212 arg1Of expression,by
R14178 T18214 T18213 arg1Of WT,Runx3
R14179 T18214 T18215 arg1Of WT,and
R14180 T18215 T18212 arg2Of and,by
R14181 T18215 T18218 arg1Of and,at
R14182 T18217 T18215 arg2Of cells,and
R14183 T18217 T18216 arg1Of cells,KO
R14184 T18219 T18218 arg2Of day,at
R14185 T18219 T18220 arg1Of day,4
R14186 T18219 T18221 arg1Of day,of
R14187 T18223 T18222 arg1Of vitro,in
R14188 T18224 T18221 arg2Of culture,of
R14189 T18224 T18223 arg1Of culture,vitro
R14190 T18226 T18225 arg1Of sequences,Primer
R14191 T18226 T18227 arg2Of sequences,used
R14192 T18226 T18231 arg1Of sequences,are
R14193 T18226 T18232 arg2Of sequences,shown
R14194 T18227 T18228 arg1Of used,for
R14195 T18230 T18228 arg2Of experiments,for
R14196 T18230 T18229 arg1Of experiments,ChIP
R14197 T18232 T18231 arg2Of shown,are
R14198 T18232 T18233 arg1Of shown,in
R14199 T18235 T18233 arg2Of S1,in
R14200 T18235 T18234 arg1Of S1,Table
R14203 T18238 T18237 arg1Of material,supplemental
R14209 T18244 T18236 arg1Of //www.jem.org/cgi/content/full/jem.20081242/DC1,Online
R14201 T18236 T18239 modOf Online,is
R14202 T18236 T18243 arg1Of Online,:
R14204 T18238 T18239 arg1Of material,is
R14205 T18238 T18240 arg1Of material,available
R14206 T18240 T18239 arg2Of available,is
R14207 T18240 T18241 arg1Of available,at
R14208 T18242 T18241 arg2Of http,at

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18126 0-6 NNP denotes Online
T18127 7-19 JJ denotes supplemental
T18128 20-28 NN denotes material
T18129 28-29 . denotes .
T18130 30-33 NNP denotes Fig
T18131 33-34 . denotes .
T18132 35-37 CD denotes S1
T18133 38-43 VBZ denotes shows
T18134 44-47 DT denotes the
T18135 48-64 NN denotes characterization
T18136 65-67 IN denotes of
T18137 68-78 JJ denotes peripheral
T18138 79-82 NNP denotes CD8
T18139 82-83 CD denotes +
T18140 84-85 NNP denotes T
T18141 86-91 NNS denotes cells
T18142 92-96 IN denotes from
T18143 97-102 JJ denotes Runx3
T18144 102-103 NN denotes −
T18145 103-104 NN denotes /
T18146 104-105 NN denotes −
T18147 106-110 NNS denotes mice
T18148 110-111 . denotes .
T18149 112-115 NNP denotes Fig
T18150 115-116 . denotes .
T18151 117-119 CD denotes S2
T18152 120-125 NNS denotes shows
T18153 126-134 JJ denotes effector
T18154 135-142 NN denotes protein
T18155 143-153 NN denotes expression
T18156 154-156 IN denotes by
T18157 157-162 NNP denotes Runx3
T18158 163-165 NNP denotes WT
T18159 166-169 CC denotes and
T18160 170-172 NNP denotes KO
T18161 173-178 NNS denotes cells
T18162 179-181 IN denotes at
T18163 182-185 NN denotes day
T18164 186-187 CD denotes 4
T18165 188-190 IN denotes of
T18166 191-193 IN denotes in
T18167 194-199 NN denotes vitro
T18168 200-207 NN denotes culture
T18169 207-208 . denotes .
T18170 209-215 NNP denotes Primer
T18171 216-225 NNS denotes sequences
T18172 226-230 VBD denotes used
T18173 231-234 IN denotes for
T18174 235-239 NNP denotes ChIP
T18175 240-251 NNS denotes experiments
T18176 252-255 VBP denotes are
T18177 256-261 VBN denotes shown
T18178 262-264 IN denotes in
T18179 265-270 NNP denotes Table
T18180 271-273 NNP denotes S1
T18181 273-274 . denotes .
T18182 275-281 NNP denotes Online
T18183 282-294 JJ denotes supplemental
T18184 295-303 NN denotes material
T18185 304-306 VBZ denotes is
T18186 307-316 JJ denotes available
T18187 317-319 IN denotes at
T18188 320-372 NNP denotes http://www.jem.org/cgi/content/full/jem.20081242/DC1
T18189 372-373 . denotes .
R14094 T18126 T18128 amod Online,material
R14095 T18127 T18128 amod supplemental,material
R14096 T18128 T18128 ROOT material,material
R14097 T18129 T18128 punct .,material
R14098 T18130 T18130 ROOT Fig,Fig
R14099 T18131 T18130 punct .,Fig
R14100 T18132 T18133 nsubj S1,shows
R14101 T18133 T18133 ROOT shows,shows
R14102 T18134 T18135 det the,characterization
R14103 T18135 T18133 dobj characterization,shows
R14104 T18136 T18135 prep of,characterization
R14105 T18137 T18141 amod peripheral,cells
R14106 T18138 T18141 nmod CD8,cells
R14107 T18139 T18141 nummod +,cells
R14108 T18140 T18141 compound T,cells
R14109 T18141 T18136 pobj cells,of
R14110 T18142 T18135 prep from,characterization
R14111 T18143 T18147 amod Runx3,mice
R14112 T18144 T18147 compound −,mice
R14113 T18145 T18147 compound /,mice
R14114 T18146 T18147 compound −,mice
R14115 T18147 T18142 pobj mice,from
R14116 T18148 T18133 punct .,shows
R14117 T18149 T18149 ROOT Fig,Fig
R14118 T18150 T18149 punct .,Fig
R14119 T18151 T18152 nummod S2,shows
R14120 T18152 T18152 ROOT shows,shows
R14121 T18153 T18155 amod effector,expression
R14122 T18154 T18155 compound protein,expression
R14123 T18155 T18152 dobj expression,shows
R14124 T18156 T18152 prep by,shows
R14125 T18157 T18158 compound Runx3,WT
R14126 T18158 T18156 pobj WT,by
R14127 T18159 T18158 cc and,WT
R14128 T18160 T18158 conj KO,WT
R14129 T18161 T18152 conj cells,shows
R14130 T18162 T18152 prep at,shows
R14131 T18163 T18162 pobj day,at
R14132 T18164 T18163 nummod 4,day
R14133 T18165 T18163 prep of,day
R14134 T18166 T18152 prep in,shows
R14135 T18167 T18168 amod vitro,culture
R14136 T18168 T18166 pobj culture,in
R14137 T18169 T18152 punct .,shows
R14138 T18170 T18171 compound Primer,sequences
R14139 T18171 T18177 nsubjpass sequences,shown
R14140 T18172 T18171 acl used,sequences
R14141 T18173 T18172 prep for,used
R14142 T18174 T18175 compound ChIP,experiments
R14143 T18175 T18173 pobj experiments,for
R14144 T18176 T18177 auxpass are,shown
R14145 T18177 T18177 ROOT shown,shown
R14146 T18178 T18177 prep in,shown
R14147 T18179 T18180 compound Table,S1
R14148 T18180 T18178 pobj S1,in
R14149 T18181 T18177 punct .,shown
R14150 T18182 T18184 amod Online,material
R14151 T18183 T18184 amod supplemental,material
R14152 T18184 T18185 nsubj material,is
R14153 T18185 T18185 ROOT is,is
R14154 T18186 T18185 acomp available,is
R14155 T18187 T18186 prep at,available
R14156 T18188 T18187 pobj http://www.jem.org/cgi/content/full/jem.20081242/DC1,at
R14157 T18189 T18185 punct .,is

GO-CC

Id Subject Object Predicate Lexical cue
T18254 86-91 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18255 173-178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T18121 0-29 Sentence denotes Online supplemental material.
T18122 30-111 Sentence denotes Fig. S1 shows the characterization of peripheral CD8+ T cells from Runx3−/− mice.
T18123 112-208 Sentence denotes Fig. S2 shows effector protein expression by Runx3 WT and KO cells at day 4 of in vitro culture.
T18124 209-274 Sentence denotes Primer sequences used for ChIP experiments are shown in Table S1.
T18125 275-373 Sentence denotes Online supplemental material is available at http://www.jem.org/cgi/content/full/jem.20081242/DC1.
T212 0-29 Sentence denotes Online supplemental material.
T213 30-111 Sentence denotes Fig. S1 shows the characterization of peripheral CD8+ T cells from Runx3−/− mice.
T214 112-208 Sentence denotes Fig. S2 shows effector protein expression by Runx3 WT and KO cells at day 4 of in vitro culture.
T215 209-274 Sentence denotes Primer sequences used for ChIP experiments are shown in Table S1.
T216 275-373 Sentence denotes Online supplemental material is available at http://www.jem.org/cgi/content/full/jem.20081242/DC1.

events-check-again

Id Subject Object Predicate Lexical cue
T18271 79-82 Protein denotes CD8
T18272 97-102 Protein denotes Runx3
T18273 157-162 Protein denotes Runx3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18274 30-33 Protein denotes Fig
T18275 35-37 Protein denotes S1
T18276 79-83 Protein denotes CD8+
T18277 97-102 Protein denotes Runx3
T18278 112-115 Protein denotes Fig
T18279 157-165 Protein denotes Runx3 WT
T18280 265-273 Protein denotes Table S1
T18281 335-338 Protein denotes org
T18282 339-342 Protein denotes cgi

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18118 79-82 Protein denotes CD8
T18119 97-102 Protein denotes Runx3
T18120 157-162 Protein denotes Runx3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18245 79-82 P10966 denotes CD8
T18246 79-82 P01732 denotes CD8
T18247 97-102 Q13761 denotes Runx3
T18248 157-162 Q13761 denotes Runx3

test2

Id Subject Object Predicate Lexical cue
T18115 79-82 Protein denotes CD8
T18116 97-102 Protein denotes Runx3
T18117 157-162 Protein denotes Runx3