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2_test

Id Subject Object Predicate Lexical cue
19139168-12464175-59674071 121-123 12464175 denotes 12
19139168-12796513-59674072 125-127 12796513 denotes 13
19139168-12464175-59674073 759-761 12464175 denotes 12
19139168-12796513-59674074 763-765 12796513 denotes 13

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15411 0-9 NN denotes Isolation
T15412 10-12 IN denotes of
T15413 13-17 JJ denotes CD8+
T15414 18-19 NN denotes T
T15415 20-25 NN denotes cells
T15416 26-30 IN denotes from
T15417 31-39 NN denotes Runx3−/−
T15418 40-44 NN denotes mice
T15419 46-61 JJ denotes Runx3-deficient
T15420 62-63 NN denotes T
T15421 64-69 NN denotes cells
T15422 70-74 VB denotes fail
T15423 75-77 TO denotes to
T15424 78-85 NN denotes silence
T15425 86-89 NN denotes CD4
T15426 90-100 NN denotes expression
T15427 101-109 RB denotes normally
T15428 110-111 -LRB- denotes (
T15429 111-115 NNP denotes Fig.
T15430 116-118 NN denotes S1
T15431 118-119 -RRB- denotes )
T15432 120-121 -LRB- denotes (
T15433 121-123 CD denotes 12
T15434 123-124 -COMMA- denotes ,
T15435 125-127 CD denotes 13
T15436 127-128 -RRB- denotes )
T15437 130-132 PRP denotes We
T15438 133-142 RB denotes therefore
T15439 143-150 RB denotes further
T15440 151-163 VB denotes fractionated
T15441 164-167 DT denotes the
T15442 168-178 RB denotes positively
T15443 179-187 VB denotes selected
T15444 188-192 JJ denotes CD8+
T15445 193-194 NN denotes T
T15446 195-200 NN denotes cells
T15447 201-205 IN denotes from
T15448 206-211 NN denotes Runx3
T15449 212-214 NN denotes KO
T15450 215-219 NN denotes mice
T15451 220-224 IN denotes into
T15452 225-233 NN denotes CD8+CD4−
T15453 234-236 NN denotes SP
T15454 237-239 CC denotes or
T15455 240-248 JJ denotes CD8+CD4+
T15456 249-251 NN denotes DP
T15457 252-257 NN denotes cells
T15458 258-260 IN denotes by
T15459 261-271 NN denotes separation
T15460 272-277 VB denotes using
T15461 278-286 JJ denotes anti-CD4
T15462 287-295 JJ denotes magnetic
T15463 296-301 NN denotes beads
T15464 303-307 DT denotes This
T15465 308-315 VB denotes yielded
T15466 316-317 DT denotes a
T15467 318-323 NN denotes Runx3
T15468 324-326 NN denotes KO
T15469 327-329 NN denotes SP
T15470 330-340 VB denotes “enriched”
T15471 341-351 NN denotes population
T15472 352-356 WDT denotes that
T15473 357-366 VB denotes contained
T15474 367-369 CD denotes 75
T15475 369-370 NN denotes %
T15476 371-379 NN denotes CD8+CD4−
T15477 380-385 NN denotes cells
T15478 386-389 CC denotes and
T15479 390-391 DT denotes a
T15480 392-394 NN denotes KO
T15481 395-397 NN denotes DP
T15482 398-406 VB denotes enriched
T15483 407-417 NN denotes population
T15484 418-422 WDT denotes that
T15485 423-432 VB denotes contained
T15486 433-435 CD denotes 85
T15487 435-436 NN denotes %
T15488 437-445 JJ denotes CD8+CD4+
T15489 446-451 NN denotes cells
T15490 452-453 -LRB- denotes (
T15491 453-457 NN denotes Fig.
T15492 458-460 NN denotes S1
T15493 460-461 -RRB- denotes )
T15494 463-466 DT denotes The
T15495 467-472 NN denotes cells
T15496 473-477 VB denotes were
T15497 478-488 VB denotes stimulated
T15498 489-493 IN denotes with
T15499 494-503 JJ denotes anti-CD3+
T15500 504-513 NN denotes anti-CD28
T15501 514-517 IN denotes for
T15502 518-519 CD denotes 2
T15503 520-521 NN denotes d
T15504 522-528 IN denotes before
T15505 529-537 VB denotes removing
T15506 538-542 PRP denotes them
T15507 543-547 IN denotes from
T15508 548-551 DT denotes the
T15509 552-555 NN denotes TCR
T15510 556-564 NN denotes stimulus
T15511 565-568 CC denotes and
T15512 569-578 VB denotes culturing
T15513 579-583 PRP denotes them
T15514 584-586 IN denotes in
T15515 587-592 NN denotes media
T15516 593-603 VB denotes containing
T15517 604-607 CD denotes 100
T15518 608-612 NN denotes U/ml
T15519 613-617 NN denotes IL-2
T15520 619-621 IN denotes As
T15521 622-632 RB denotes previously
T15522 633-641 VB denotes reported
T15523 641-642 -COMMA- denotes ,
T15524 643-654 JJ denotes TCR-induced
T15525 655-668 NN denotes proliferation
T15526 669-671 IN denotes of
T15527 672-680 NN denotes Runx3−/−
T15528 681-685 JJ denotes CD8+
T15529 686-687 NN denotes T
T15530 688-693 NN denotes cells
T15531 694-697 VB denotes was
T15532 698-706 RB denotes severely
T15533 707-715 JJ denotes impaired
T15534 715-716 -COMMA- denotes ,
T15535 717-729 JJ denotes irrespective
T15536 730-732 IN denotes of
T15537 733-736 NN denotes CD4
T15538 737-747 NN denotes expression
T15539 748-749 -LRB- denotes (
T15540 749-753 NN denotes Fig.
T15541 754-756 NN denotes S1
T15542 756-757 -RRB- denotes )
T15543 758-759 -LRB- denotes (
T15544 759-761 CD denotes 12
T15545 761-762 -COMMA- denotes ,
T15546 763-765 CD denotes 13
T15547 765-766 -RRB- denotes )
T15548 768-775 RB denotes However
T15549 775-776 -COMMA- denotes ,
T15550 777-780 DT denotes the
T15551 781-789 NN denotes Runx3−/−
T15552 790-795 NN denotes cells
T15553 796-802 VB denotes showed
T15554 803-815 JJ denotes cell-surface
T15555 816-826 NN denotes expression
T15556 827-835 NN denotes patterns
T15557 836-846 JJ denotes indicative
T15558 847-849 IN denotes of
T15559 850-859 VB denotes activated
T15560 860-865 NN denotes cells
T15561 865-866 -COMMA- denotes ,
T15562 867-876 VB denotes including
T15563 877-890 NN denotes up-regulation
T15564 891-893 IN denotes of
T15565 894-898 NN denotes CD25
T15566 899-902 CC denotes and
T15567 903-907 NN denotes CD69
T15568 908-909 -LRB- denotes (
T15569 909-913 NN denotes Fig.
T15570 914-916 NN denotes S1
T15571 916-917 -RRB- denotes )
T15572 919-921 IN denotes As
T15573 922-930 VB denotes expected
T15574 931-935 IN denotes from
T15575 936-941 PRP-DOLLAR- denotes their
T15576 942-949 NN denotes ability
T15577 950-952 TO denotes to
T15578 953-964 VB denotes up-regulate
T15579 965-969 NN denotes CD25
T15580 969-970 -COMMA- denotes ,
T15581 971-979 NN denotes Runx3−/−
T15582 980-984 JJ denotes CD8+
T15583 985-986 NN denotes T
T15584 987-992 NN denotes cells
T15585 993-1002 VB denotes responded
T15586 1003-1005 TO denotes to
T15587 1006-1010 NN denotes IL-2
T15588 1011-1026 NN denotes supplementation
T15589 1027-1032 IN denotes after
T15590 1033-1036 NN denotes day
T15591 1037-1038 CD denotes 2
T15592 1039-1042 CC denotes and
T15593 1043-1054 RB denotes efficiently
T15594 1055-1063 VB denotes expanded
T15595 1064-1069 IN denotes until
T15596 1070-1073 NN denotes day
T15597 1074-1075 CD denotes 6
T15598 1076-1078 IN denotes of
T15599 1079-1082 DT denotes the
T15600 1083-1090 NN denotes culture
T15601 1091-1097 NN denotes period
T15602 1097-1098 -COMMA- denotes ,
T15603 1099-1105 IN denotes albeit
T15604 1106-1108 IN denotes at
T15605 1109-1115 JJ denotes slower
T15606 1116-1121 NN denotes rates
T15607 1122-1130 VB denotes compared
T15608 1131-1135 IN denotes with
T15609 1136-1138 JJ denotes WT
T15610 1139-1144 NN denotes cells
T15611 1145-1146 -LRB- denotes (
T15612 1146-1150 NN denotes Fig.
T15613 1151-1153 NN denotes S1
T15614 1153-1154 -RRB- denotes )
T15615 1156-1164 IN denotes Although
T15616 1165-1166 DT denotes a
T15617 1167-1175 NN denotes fraction
T15618 1176-1178 IN denotes of
T15619 1179-1182 DT denotes the
T15620 1183-1185 NN denotes KO
T15621 1186-1188 NN denotes DP
T15622 1189-1194 NN denotes cells
T15623 1195-1203 VB denotes silenced
T15624 1204-1207 NN denotes CD4
T15625 1208-1218 NN denotes expression
T15626 1219-1224 IN denotes after
T15627 1225-1235 NN denotes activation
T15628 1235-1236 -COMMA- denotes ,
T15629 1237-1240 DT denotes the
T15630 1241-1246 NN denotes ratio
T15631 1247-1249 IN denotes of
T15632 1250-1255 NN denotes SP/DP
T15633 1256-1261 NN denotes cells
T15634 1262-1264 IN denotes in
T15635 1265-1269 DT denotes each
T15636 1270-1278 VB denotes enriched
T15637 1279-1289 NN denotes population
T15638 1290-1298 VB denotes remained
T15639 1299-1307 JJ denotes constant
T15640 1308-1318 RB denotes thereafter
T15641 1318-1319 -COMMA- denotes ,
T15642 1320-1323 CC denotes and
T15643 1324-1326 PRP denotes we
T15644 1327-1330 VB denotes did
T15645 1331-1334 RB denotes not
T15646 1335-1342 VB denotes observe
T15647 1343-1346 DT denotes any
T15648 1347-1352 JJ denotes major
T15649 1353-1364 NN denotes differences
T15650 1365-1372 IN denotes between
T15651 1373-1378 DT denotes these
T15652 1379-1382 CD denotes two
T15653 1383-1394 NN denotes populations
T15654 1395-1405 IN denotes throughout
T15655 1406-1409 DT denotes the
T15656 1410-1417 NN denotes culture
T15657 1418-1424 NN denotes period
T15658 1424-1425 -COMMA- denotes ,
T15659 1426-1436 VB denotes indicating
T15660 1437-1441 IN denotes that
T15661 1442-1444 IN denotes in
T15662 1445-1450 NN denotes terms
T15663 1451-1453 IN denotes of
T15664 1454-1462 NN denotes effector
T15665 1463-1466 NN denotes CTL
T15666 1467-1482 NN denotes differentiation
T15667 1483-1486 CC denotes and
T15668 1487-1492 IN denotes under
T15669 1493-1496 PRP-DOLLAR- denotes our
T15670 1497-1504 NN denotes culture
T15671 1505-1515 NN denotes conditions
T15672 1515-1516 -COMMA- denotes ,
T15673 1517-1525 NN denotes Runx3−/−
T15674 1526-1530 JJ denotes CD8+
T15675 1531-1532 NN denotes T
T15676 1533-1538 NN denotes cells
T15677 1539-1543 WDT denotes that
T15678 1544-1548 RB denotes also
T15679 1549-1558 VB denotes coexpress
T15680 1559-1562 NN denotes CD4
T15681 1563-1566 VB denotes are
T15682 1567-1584 JJ denotes indistinguishable
T15683 1585-1589 IN denotes from
T15684 1590-1595 DT denotes those
T15685 1596-1600 WDT denotes that
T15686 1601-1603 VB denotes do
T15687 1604-1607 RB denotes not
T15688 1609-1612 DT denotes The
T15689 1613-1617 NN denotes data
T15690 1618-1627 VB denotes presented
T15691 1628-1630 IN denotes in
T15692 1631-1635 NNP denotes Fig.
T15693 1636-1638 NN denotes S2
T15694 1639-1642 VB denotes are
T15695 1643-1647 IN denotes from
T15696 1648-1653 NN denotes Runx3
T15697 1654-1656 NN denotes KO
T15698 1657-1659 NN denotes SP
T15699 1660-1665 NN denotes cells
T15700 1665-1666 -COMMA- denotes ,
T15701 1667-1674 IN denotes whereas
T15702 1675-1680 DT denotes those
T15703 1681-1686 VB denotes shown
T15704 1687-1689 IN denotes in
T15705 1690-1695 NNP denotes Figs.
T15706 1696-1697 CD denotes 3
T15707 1698-1701 CC denotes and
T15708 1702-1703 CD denotes 4
T15709 1704-1707 VB denotes are
T15710 1708-1712 IN denotes from
T15711 1713-1718 JJ denotes total
T15712 1719-1724 NN denotes Runx3
T15713 1725-1727 NN denotes KO
T15714 1728-1731 NN denotes CD8
T15715 1732-1737 NN denotes cells
R11973 T15411 T15412 arg1Of Isolation,of
R11974 T15415 T15412 arg2Of cells,of
R11975 T15415 T15413 arg1Of cells,CD8+
R11976 T15415 T15414 arg1Of cells,T
R11977 T15415 T15416 arg1Of cells,from
R11978 T15418 T15416 arg2Of mice,from
R11979 T15418 T15417 arg1Of mice,Runx3−/−
R11980 T15421 T15419 arg1Of cells,Runx3-deficient
R11981 T15421 T15420 arg1Of cells,T
R11982 T15421 T15422 arg1Of cells,fail
R11983 T15422 T15423 arg1Of fail,to
R11984 T15422 T15432 arg1Of fail,(
R11985 T15426 T15423 arg2Of expression,to
R11986 T15426 T15424 arg1Of expression,silence
R11987 T15426 T15425 arg1Of expression,CD4
R11988 T15426 T15427 arg1Of expression,normally
R11989 T15426 T15428 arg1Of expression,(
R11990 T15430 T15428 arg2Of S1,(
R11991 T15430 T15429 arg1Of S1,Fig.
R11992 T15431 T15428 arg3Of ),(
R11993 T15433 T15432 arg2Of 12,(
R11994 T15433 T15434 arg1Of 12,","
R11995 T15435 T15434 arg2Of 13,","
R11996 T15436 T15432 arg3Of ),(
R11997 T15437 T15440 arg1Of We,fractionated
R11998 T15440 T15438 arg1Of fractionated,therefore
R11999 T15440 T15439 arg1Of fractionated,further
R12000 T15440 T15451 arg1Of fractionated,into
R12001 T15440 T15460 modOf fractionated,using
R12002 T15443 T15442 arg1Of selected,positively
R12003 T15446 T15440 arg2Of cells,fractionated
R12004 T15446 T15441 arg1Of cells,the
R12005 T15446 T15443 arg1Of cells,selected
R12006 T15446 T15444 arg1Of cells,CD8+
R12007 T15446 T15445 arg1Of cells,T
R12008 T15446 T15447 arg1Of cells,from
R12009 T15450 T15447 arg2Of mice,from
R12010 T15450 T15448 arg1Of mice,Runx3
R12011 T15450 T15449 arg1Of mice,KO
R12012 T15453 T15452 arg1Of SP,CD8+CD4−
R12013 T15453 T15454 arg1Of SP,or
R12014 T15454 T15451 arg2Of or,into
R12015 T15454 T15458 arg1Of or,by
R12016 T15457 T15454 arg2Of cells,or
R12017 T15457 T15455 arg1Of cells,CD8+CD4+
R12018 T15457 T15456 arg1Of cells,DP
R12019 T15459 T15458 arg2Of separation,by
R12020 T15462 T15461 arg1Of magnetic,anti-CD4
R12021 T15463 T15460 arg2Of beads,using
R12022 T15463 T15462 arg1Of beads,magnetic
R12023 T15464 T15465 arg1Of This,yielded
R12024 T15465 T15478 arg1Of yielded,and
R12025 T15469 T15466 arg1Of SP,a
R12026 T15469 T15467 arg1Of SP,Runx3
R12027 T15469 T15468 arg1Of SP,KO
R12028 T15469 T15470 arg1Of SP,“enriched”
R12029 T15471 T15470 arg2Of population,“enriched”
R12030 T15472 T15465 arg2Of that,yielded
R12031 T15472 T15473 arg1Of that,contained
R12032 T15473 T15470 arg3Of contained,“enriched”
R12033 T15474 T15475 arg1Of 75,%
R12034 T15477 T15473 arg2Of cells,contained
R12035 T15477 T15474 arg1Of cells,75
R12036 T15477 T15476 arg1Of cells,CD8+CD4−
R12037 T15481 T15479 arg1Of DP,a
R12038 T15481 T15480 arg1Of DP,KO
R12039 T15481 T15482 arg1Of DP,enriched
R12040 T15482 T15478 arg2Of enriched,and
R12041 T15483 T15482 arg2Of population,enriched
R12042 T15483 T15484 arg1Of population,that
R12043 T15483 T15485 arg1Of population,contained
R12044 T15486 T15487 arg1Of 85,%
R12045 T15489 T15485 arg2Of cells,contained
R12046 T15489 T15486 arg1Of cells,85
R12047 T15489 T15488 arg1Of cells,CD8+CD4+
R12048 T15489 T15490 arg1Of cells,(
R12049 T15492 T15490 arg2Of S1,(
R12050 T15492 T15491 arg1Of S1,Fig.
R12051 T15493 T15490 arg3Of ),(
R12052 T15495 T15494 arg1Of cells,The
R12053 T15495 T15496 arg1Of cells,were
R12054 T15495 T15497 arg2Of cells,stimulated
R12055 T15495 T15505 arg1Of cells,removing
R12056 T15495 T15512 arg1Of cells,culturing
R12057 T15497 T15496 arg2Of stimulated,were
R12058 T15497 T15498 arg1Of stimulated,with
R12059 T15497 T15501 arg1Of stimulated,for
R12060 T15497 T15504 arg1Of stimulated,before
R12061 T15500 T15498 arg2Of anti-CD28,with
R12062 T15500 T15499 arg1Of anti-CD28,anti-CD3+
R12063 T15503 T15501 arg2Of d,for
R12064 T15503 T15502 arg1Of d,2
R12065 T15505 T15507 arg1Of removing,from
R12066 T15505 T15511 arg1Of removing,and
R12067 T15506 T15505 arg2Of them,removing
R12068 T15510 T15507 arg2Of stimulus,from
R12069 T15510 T15508 arg1Of stimulus,the
R12070 T15510 T15509 arg1Of stimulus,TCR
R12071 T15511 T15504 arg2Of and,before
R12072 T15512 T15511 arg2Of culturing,and
R12073 T15512 T15514 arg1Of culturing,in
R12074 T15513 T15512 arg2Of them,culturing
R12075 T15515 T15514 arg2Of media,in
R12076 T15515 T15516 arg1Of media,containing
R12077 T15519 T15516 arg2Of IL-2,containing
R12078 T15519 T15517 arg1Of IL-2,100
R12079 T15519 T15518 arg1Of IL-2,U/ml
R12080 T15522 T15520 arg2Of reported,As
R12081 T15522 T15521 arg1Of reported,previously
R12082 T15525 T15524 arg1Of proliferation,TCR-induced
R12083 T15525 T15526 arg1Of proliferation,of
R12084 T15525 T15531 arg1Of proliferation,was
R12085 T15525 T15533 arg1Of proliferation,impaired
R12086 T15525 T15535 arg1Of proliferation,irrespective
R12087 T15530 T15526 arg2Of cells,of
R12088 T15530 T15527 arg1Of cells,Runx3−/−
R12089 T15530 T15528 arg1Of cells,CD8+
R12090 T15530 T15529 arg1Of cells,T
R12091 T15531 T15520 arg1Of was,As
R12092 T15531 T15523 arg1Of was,","
R12093 T15531 T15543 arg1Of was,(
R12094 T15533 T15534 arg1Of impaired,","
R12095 T15534 T15531 arg2Of ",",was
R12096 T15534 T15532 arg1Of ",",severely
R12097 T15535 T15534 arg2Of irrespective,","
R12098 T15535 T15536 arg1Of irrespective,of
R12099 T15538 T15536 arg2Of expression,of
R12100 T15538 T15537 arg1Of expression,CD4
R12101 T15538 T15539 arg1Of expression,(
R12102 T15541 T15539 arg2Of S1,(
R12103 T15541 T15540 arg1Of S1,Fig.
R12104 T15542 T15539 arg3Of ),(
R12105 T15544 T15543 arg2Of 12,(
R12106 T15544 T15545 arg1Of 12,","
R12107 T15546 T15545 arg2Of 13,","
R12108 T15547 T15543 arg3Of ),(
R12109 T15552 T15550 arg1Of cells,the
R12110 T15552 T15551 arg1Of cells,Runx3−/−
R12111 T15552 T15553 arg1Of cells,showed
R12112 T15553 T15548 arg1Of showed,However
R12113 T15553 T15549 arg1Of showed,","
R12114 T15556 T15553 arg2Of patterns,showed
R12115 T15556 T15554 arg1Of patterns,cell-surface
R12116 T15556 T15555 arg1Of patterns,expression
R12117 T15556 T15557 arg1Of patterns,indicative
R12118 T15556 T15561 arg1Of patterns,","
R12119 T15556 T15562 arg1Of patterns,including
R12120 T15557 T15558 arg1Of indicative,of
R12121 T15560 T15558 arg2Of cells,of
R12122 T15560 T15559 arg2Of cells,activated
R12123 T15563 T15564 arg1Of up-regulation,of
R12124 T15563 T15566 arg1Of up-regulation,and
R12125 T15565 T15564 arg2Of CD25,of
R12126 T15566 T15562 arg2Of and,including
R12127 T15567 T15566 arg2Of CD69,and
R12128 T15567 T15568 arg1Of CD69,(
R12129 T15570 T15568 arg2Of S1,(
R12130 T15570 T15569 arg1Of S1,Fig.
R12131 T15571 T15568 arg3Of ),(
R12132 T15573 T15572 arg2Of expected,As
R12133 T15573 T15574 arg1Of expected,from
R12134 T15576 T15574 arg2Of ability,from
R12135 T15576 T15575 arg1Of ability,their
R12136 T15576 T15577 modOf ability,to
R12137 T15578 T15577 arg1Of up-regulate,to
R12138 T15579 T15578 arg2Of CD25,up-regulate
R12139 T15584 T15581 arg1Of cells,Runx3−/−
R12140 T15584 T15582 arg1Of cells,CD8+
R12141 T15584 T15583 arg1Of cells,T
R12142 T15584 T15585 arg1Of cells,responded
R12143 T15584 T15594 arg2Of cells,expanded
R12144 T15585 T15586 arg1Of responded,to
R12145 T15585 T15589 arg1Of responded,after
R12146 T15585 T15592 arg1Of responded,and
R12147 T15588 T15586 arg2Of supplementation,to
R12148 T15588 T15587 arg1Of supplementation,IL-2
R12149 T15590 T15589 arg2Of day,after
R12150 T15590 T15591 arg1Of day,2
R12151 T15592 T15572 arg1Of and,As
R12152 T15592 T15580 arg1Of and,","
R12153 T15594 T15592 arg2Of expanded,and
R12154 T15594 T15593 arg1Of expanded,efficiently
R12155 T15594 T15595 arg1Of expanded,until
R12156 T15594 T15602 arg1Of expanded,","
R12157 T15594 T15604 arg1Of expanded,at
R12158 T15596 T15595 arg2Of day,until
R12159 T15596 T15597 arg1Of day,6
R12160 T15596 T15598 arg1Of day,of
R12161 T15601 T15598 arg2Of period,of
R12162 T15601 T15599 arg1Of period,the
R12163 T15601 T15600 arg1Of period,culture
R12164 T15604 T15603 arg1Of at,albeit
R12165 T15606 T15604 arg2Of rates,at
R12166 T15606 T15605 arg1Of rates,slower
R12167 T15606 T15607 arg1Of rates,compared
R12168 T15608 T15607 arg2Of with,compared
R12169 T15610 T15608 arg2Of cells,with
R12170 T15610 T15609 arg1Of cells,WT
R12171 T15610 T15611 arg1Of cells,(
R12172 T15613 T15611 arg2Of S1,(
R12173 T15613 T15612 arg1Of S1,Fig.
R12174 T15614 T15611 arg3Of ),(
R12175 T15617 T15616 arg1Of fraction,a
R12176 T15617 T15618 arg1Of fraction,of
R12177 T15617 T15623 arg1Of fraction,silenced
R12178 T15622 T15618 arg2Of cells,of
R12179 T15622 T15619 arg1Of cells,the
R12180 T15622 T15620 arg1Of cells,KO
R12181 T15622 T15621 arg1Of cells,DP
R12182 T15623 T15615 arg2Of silenced,Although
R12183 T15623 T15626 arg1Of silenced,after
R12184 T15625 T15623 arg2Of expression,silenced
R12185 T15625 T15624 arg1Of expression,CD4
R12186 T15627 T15626 arg2Of activation,after
R12187 T15630 T15629 arg1Of ratio,the
R12188 T15630 T15631 arg1Of ratio,of
R12189 T15630 T15634 arg1Of ratio,in
R12190 T15630 T15638 arg1Of ratio,remained
R12191 T15630 T15639 arg1Of ratio,constant
R12192 T15633 T15631 arg2Of cells,of
R12193 T15633 T15632 arg1Of cells,SP/DP
R12194 T15637 T15634 arg2Of population,in
R12195 T15637 T15635 arg1Of population,each
R12196 T15637 T15636 arg2Of population,enriched
R12197 T15638 T15615 arg1Of remained,Although
R12198 T15638 T15628 arg1Of remained,","
R12199 T15638 T15640 arg1Of remained,thereafter
R12200 T15638 T15642 arg1Of remained,and
R12201 T15639 T15638 arg2Of constant,remained
R12202 T15642 T15641 arg1Of and,","
R12203 T15643 T15644 arg1Of we,did
R12204 T15643 T15646 arg1Of we,observe
R12205 T15646 T15642 arg2Of observe,and
R12206 T15646 T15644 arg2Of observe,did
R12207 T15646 T15645 arg1Of observe,not
R12208 T15646 T15658 arg1Of observe,","
R12209 T15646 T15659 modOf observe,indicating
R12210 T15649 T15646 arg2Of differences,observe
R12211 T15649 T15647 arg1Of differences,any
R12212 T15649 T15648 arg1Of differences,major
R12213 T15649 T15650 arg1Of differences,between
R12214 T15653 T15650 arg2Of populations,between
R12215 T15653 T15651 arg1Of populations,these
R12216 T15653 T15652 arg1Of populations,two
R12217 T15653 T15654 arg1Of populations,throughout
R12218 T15657 T15654 arg2Of period,throughout
R12219 T15657 T15655 arg1Of period,the
R12220 T15657 T15656 arg1Of period,culture
R12221 T15661 T15667 arg1Of in,and
R12222 T15662 T15661 arg2Of terms,in
R12223 T15662 T15663 arg1Of terms,of
R12224 T15666 T15663 arg2Of differentiation,of
R12225 T15666 T15664 arg1Of differentiation,effector
R12226 T15666 T15665 arg1Of differentiation,CTL
R12227 T15668 T15667 arg2Of under,and
R12228 T15671 T15668 arg2Of conditions,under
R12229 T15671 T15669 arg1Of conditions,our
R12230 T15671 T15670 arg1Of conditions,culture
R12231 T15676 T15673 arg1Of cells,Runx3−/−
R12232 T15676 T15674 arg1Of cells,CD8+
R12233 T15676 T15675 arg1Of cells,T
R12234 T15676 T15677 arg1Of cells,that
R12235 T15676 T15679 arg1Of cells,coexpress
R12236 T15676 T15681 arg1Of cells,are
R12237 T15676 T15682 arg1Of cells,indistinguishable
R12238 T15679 T15678 arg1Of coexpress,also
R12239 T15680 T15679 arg2Of CD4,coexpress
R12240 T15681 T15659 arg2Of are,indicating
R12241 T15681 T15660 arg1Of are,that
R12242 T15681 T15661 arg1Of are,in
R12243 T15681 T15668 arg1Of are,under
R12244 T15681 T15672 arg1Of are,","
R12245 T15682 T15681 arg2Of indistinguishable,are
R12246 T15682 T15683 arg1Of indistinguishable,from
R12247 T15684 T15683 arg2Of those,from
R12248 T15684 T15685 arg1Of those,that
R12249 T15684 T15686 arg1Of those,do
R12250 T15686 T15687 arg1Of do,not
R12251 T15689 T15688 arg1Of data,The
R12252 T15689 T15690 arg2Of data,presented
R12253 T15689 T15694 arg1Of data,are
R12254 T15689 T15709 arg1Of data,are
R12255 T15689 T15710 arg1Of data,from
R12256 T15690 T15691 arg1Of presented,in
R12257 T15693 T15691 arg2Of S2,in
R12258 T15693 T15692 arg1Of S2,Fig.
R12259 T15694 T15695 arg1Of are,from
R12260 T15694 T15700 arg1Of are,","
R12261 T15694 T15701 arg1Of are,whereas
R12262 T15699 T15695 arg2Of cells,from
R12263 T15699 T15696 arg1Of cells,Runx3
R12264 T15699 T15697 arg1Of cells,KO
R12265 T15699 T15698 arg1Of cells,SP
R12266 T15702 T15703 arg2Of those,shown
R12267 T15703 T15704 arg1Of shown,in
R12268 T15705 T15706 arg1Of Figs.,3
R12269 T15705 T15707 arg1Of Figs.,and
R12270 T15707 T15704 arg2Of and,in
R12271 T15708 T15707 arg2Of 4,and
R12272 T15709 T15701 arg2Of are,whereas
R12273 T15709 T15703 modOf are,shown
R12274 T15710 T15694 arg2Of from,are
R12275 T15710 T15709 arg2Of from,are
R12276 T15715 T15710 arg2Of cells,from
R12277 T15715 T15711 arg1Of cells,total
R12278 T15715 T15712 arg1Of cells,Runx3
R12279 T15715 T15713 arg1Of cells,KO
R12280 T15715 T15714 arg1Of cells,CD8

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15057 0-9 NN denotes Isolation
T15058 10-12 IN denotes of
T15059 13-16 CD denotes CD8
T15060 16-17 CD denotes +
T15061 18-19 NNP denotes T
T15062 20-25 NNS denotes cells
T15063 26-30 IN denotes from
T15064 31-36 JJ denotes Runx3
T15065 36-37 NN denotes −
T15066 37-38 NN denotes /
T15067 38-39 NN denotes −
T15068 40-44 NNS denotes mice
T15069 44-45 . denotes .
T15070 46-61 JJ denotes Runx3-deficient
T15071 62-63 NNP denotes T
T15072 64-69 NNS denotes cells
T15073 70-74 VBP denotes fail
T15074 75-77 TO denotes to
T15075 78-85 NN denotes silence
T15076 86-89 NNP denotes CD4
T15077 90-100 NN denotes expression
T15078 101-109 RB denotes normally
T15079 110-111 -LRB- denotes (
T15080 111-114 NNP denotes Fig
T15081 114-115 . denotes .
T15082 116-118 CD denotes S1
T15083 118-119 -RRB- denotes )
T15084 120-121 -LRB- denotes (
T15085 121-123 CD denotes 12
T15086 123-124 , denotes ,
T15087 125-127 CD denotes 13
T15088 127-128 -RRB- denotes )
T15089 128-129 . denotes .
T15090 130-132 PRP denotes We
T15091 133-142 RB denotes therefore
T15092 143-150 JJ denotes further
T15093 151-163 VBD denotes fractionated
T15094 164-167 DT denotes the
T15095 168-178 RB denotes positively
T15096 179-187 VBN denotes selected
T15097 188-191 NNP denotes CD8
T15098 191-192 CD denotes +
T15099 193-194 NNP denotes T
T15100 195-200 NNS denotes cells
T15101 201-205 IN denotes from
T15102 206-211 JJ denotes Runx3
T15103 212-214 NNP denotes KO
T15104 215-219 NNS denotes mice
T15105 220-224 IN denotes into
T15106 225-228 CD denotes CD8
T15107 228-229 CD denotes +
T15108 229-232 NNP denotes CD4
T15109 232-233 NNP denotes −
T15110 234-236 NNP denotes SP
T15111 237-239 CC denotes or
T15112 240-243 NNP denotes CD8
T15113 243-244 NNP denotes +
T15114 244-247 NNP denotes CD4
T15115 247-248 NNP denotes +
T15116 249-251 NNP denotes DP
T15117 252-257 NNS denotes cells
T15118 258-260 IN denotes by
T15119 261-271 NN denotes separation
T15120 272-277 VBG denotes using
T15121 278-286 JJ denotes anti-CD4
T15122 287-295 JJ denotes magnetic
T15123 296-301 NNS denotes beads
T15124 301-302 . denotes .
T15125 303-307 DT denotes This
T15126 308-315 VBD denotes yielded
T15127 316-317 DT denotes a
T15128 318-323 JJ denotes Runx3
T15129 324-326 NNP denotes KO
T15130 327-329 NNP denotes SP
T15131 331-339 VBD denotes enriched
T15132 341-351 NN denotes population
T15133 352-356 WDT denotes that
T15134 357-366 VBD denotes contained
T15135 367-369 CD denotes 75
T15136 369-370 NN denotes %
T15137 371-374 CD denotes CD8
T15138 374-375 NN denotes +
T15139 375-378 CD denotes CD4
T15140 378-379 NN denotes −
T15141 380-385 NNS denotes cells
T15142 386-389 CC denotes and
T15143 390-391 DT denotes a
T15144 392-394 NNP denotes KO
T15145 395-397 NNP denotes DP
T15146 398-406 VBD denotes enriched
T15147 407-417 NN denotes population
T15148 418-422 WDT denotes that
T15149 423-432 VBD denotes contained
T15150 433-435 CD denotes 85
T15151 435-436 NN denotes %
T15152 437-440 CD denotes CD8
T15153 440-441 NN denotes +
T15154 441-444 CD denotes CD4
T15155 444-445 NN denotes +
T15156 446-451 NNS denotes cells
T15157 452-453 -LRB- denotes (
T15158 453-456 NNP denotes Fig
T15159 456-457 . denotes .
T15160 458-460 CD denotes S1
T15161 460-461 -RRB- denotes )
T15162 461-462 . denotes .
T15163 463-466 DT denotes The
T15164 467-472 NNS denotes cells
T15165 473-477 VBD denotes were
T15166 478-488 VBN denotes stimulated
T15167 489-493 IN denotes with
T15168 494-502 JJ denotes anti-CD3
T15169 502-503 NN denotes +
T15170 504-513 NN denotes anti-CD28
T15171 514-517 IN denotes for
T15172 518-519 CD denotes 2
T15173 520-521 LS denotes d
T15174 522-528 IN denotes before
T15175 529-537 VBG denotes removing
T15176 538-542 PRP denotes them
T15177 543-547 IN denotes from
T15178 548-551 DT denotes the
T15179 552-555 NNP denotes TCR
T15180 556-564 NN denotes stimulus
T15181 565-568 CC denotes and
T15182 569-578 VBG denotes culturing
T15183 579-583 PRP denotes them
T15184 584-586 IN denotes in
T15185 587-592 NNS denotes media
T15186 593-603 VBG denotes containing
T15187 604-607 CD denotes 100
T15188 608-612 NNP denotes U/ml
T15189 613-617 NNP denotes IL-2
T15190 617-618 . denotes .
T15191 619-621 IN denotes As
T15192 622-632 RB denotes previously
T15193 633-641 VBN denotes reported
T15194 641-642 , denotes ,
T15195 643-654 JJ denotes TCR-induced
T15196 655-668 NN denotes proliferation
T15197 669-671 IN denotes of
T15198 672-677 NNP denotes Runx3
T15199 677-678 FW denotes −
T15200 678-679 FW denotes /
T15201 679-680 FW denotes −
T15202 681-684 FW denotes CD8
T15203 684-685 FW denotes +
T15204 686-687 FW denotes T
T15205 688-693 NNS denotes cells
T15206 694-697 VBD denotes was
T15207 698-706 RB denotes severely
T15208 707-715 VBN denotes impaired
T15209 715-716 , denotes ,
T15210 717-729 RB denotes irrespective
T15211 730-732 IN denotes of
T15212 733-736 CD denotes CD4
T15213 737-747 NN denotes expression
T15214 748-749 -LRB- denotes (
T15215 749-752 NNP denotes Fig
T15216 752-753 . denotes .
T15217 754-756 CD denotes S1
T15218 756-757 -RRB- denotes )
T15219 758-759 -LRB- denotes (
T15220 759-761 CD denotes 12
T15221 761-762 , denotes ,
T15222 763-765 CD denotes 13
T15223 765-766 -RRB- denotes )
T15224 766-767 . denotes .
T15225 768-775 RB denotes However
T15226 775-776 , denotes ,
T15227 777-780 DT denotes the
T15228 781-786 NNP denotes Runx3
T15229 786-787 NNP denotes −
T15230 787-788 VBD denotes /
T15231 788-789 CD denotes −
T15232 790-795 NNS denotes cells
T15233 796-802 VBD denotes showed
T15234 803-815 JJ denotes cell-surface
T15235 816-826 NN denotes expression
T15236 827-835 NNS denotes patterns
T15237 836-846 JJ denotes indicative
T15238 847-849 IN denotes of
T15239 850-859 VBN denotes activated
T15240 860-865 NNS denotes cells
T15241 865-866 , denotes ,
T15242 867-876 VBG denotes including
T15243 877-890 NN denotes up-regulation
T15244 891-893 IN denotes of
T15245 894-898 NNP denotes CD25
T15246 899-902 CC denotes and
T15247 903-907 NNP denotes CD69
T15248 908-909 -LRB- denotes (
T15249 909-912 NNP denotes Fig
T15250 912-913 . denotes .
T15251 914-916 CD denotes S1
T15252 916-917 -RRB- denotes )
T15253 917-918 . denotes .
T15254 919-921 IN denotes As
T15255 922-930 VBN denotes expected
T15256 931-935 IN denotes from
T15257 936-941 PRP$ denotes their
T15258 942-949 NN denotes ability
T15259 950-952 TO denotes to
T15260 953-964 VB denotes up-regulate
T15261 965-969 NNP denotes CD25
T15262 969-970 , denotes ,
T15263 971-976 NNP denotes Runx3
T15264 976-977 FW denotes −
T15265 977-978 FW denotes /
T15266 978-979 FW denotes −
T15267 980-983 FW denotes CD8
T15268 983-984 FW denotes +
T15269 985-986 FW denotes T
T15270 987-992 NNS denotes cells
T15271 993-1002 VBD denotes responded
T15272 1003-1005 TO denotes to
T15273 1006-1010 NNP denotes IL-2
T15274 1011-1026 NN denotes supplementation
T15275 1027-1032 IN denotes after
T15276 1033-1036 NN denotes day
T15277 1037-1038 CD denotes 2
T15278 1039-1042 CC denotes and
T15279 1043-1054 RB denotes efficiently
T15280 1055-1063 VBN denotes expanded
T15281 1064-1069 IN denotes until
T15282 1070-1073 NN denotes day
T15283 1074-1075 CD denotes 6
T15284 1076-1078 IN denotes of
T15285 1079-1082 DT denotes the
T15286 1083-1090 NN denotes culture
T15287 1091-1097 NN denotes period
T15288 1097-1098 , denotes ,
T15289 1099-1105 IN denotes albeit
T15290 1106-1108 IN denotes at
T15291 1109-1115 JJR denotes slower
T15292 1116-1121 NNS denotes rates
T15293 1122-1130 VBN denotes compared
T15294 1131-1135 IN denotes with
T15295 1136-1138 NNP denotes WT
T15296 1139-1144 NNS denotes cells
T15297 1145-1146 -LRB- denotes (
T15298 1146-1149 NNP denotes Fig
T15299 1149-1150 . denotes .
T15300 1151-1153 CD denotes S1
T15301 1153-1154 -RRB- denotes )
T15302 1154-1155 . denotes .
T15303 1156-1164 IN denotes Although
T15304 1165-1166 DT denotes a
T15305 1167-1175 NN denotes fraction
T15306 1176-1178 IN denotes of
T15307 1179-1182 DT denotes the
T15308 1183-1185 NNP denotes KO
T15309 1186-1188 NNP denotes DP
T15310 1189-1194 NNS denotes cells
T15311 1195-1203 VBD denotes silenced
T15312 1204-1207 CD denotes CD4
T15313 1208-1218 NN denotes expression
T15314 1219-1224 IN denotes after
T15315 1225-1235 NN denotes activation
T15316 1235-1236 , denotes ,
T15317 1237-1240 DT denotes the
T15318 1241-1246 NN denotes ratio
T15319 1247-1249 IN denotes of
T15320 1250-1255 NNP denotes SP/DP
T15321 1256-1261 NNS denotes cells
T15322 1262-1264 IN denotes in
T15323 1265-1269 DT denotes each
T15324 1270-1278 VBN denotes enriched
T15325 1279-1289 NN denotes population
T15326 1290-1298 VBD denotes remained
T15327 1299-1307 JJ denotes constant
T15328 1308-1318 RB denotes thereafter
T15329 1318-1319 , denotes ,
T15330 1320-1323 CC denotes and
T15331 1324-1326 PRP denotes we
T15332 1327-1330 VBD denotes did
T15333 1331-1334 RB denotes not
T15334 1335-1342 VB denotes observe
T15335 1343-1346 DT denotes any
T15336 1347-1352 JJ denotes major
T15337 1353-1364 NNS denotes differences
T15338 1365-1372 IN denotes between
T15339 1373-1378 DT denotes these
T15340 1379-1382 CD denotes two
T15341 1383-1394 NNS denotes populations
T15342 1395-1405 IN denotes throughout
T15343 1406-1409 DT denotes the
T15344 1410-1417 NN denotes culture
T15345 1418-1424 NN denotes period
T15346 1424-1425 , denotes ,
T15347 1426-1436 VBG denotes indicating
T15348 1437-1441 IN denotes that
T15349 1442-1444 IN denotes in
T15350 1445-1450 NNS denotes terms
T15351 1451-1453 IN denotes of
T15352 1454-1462 NN denotes effector
T15353 1463-1466 NNP denotes CTL
T15354 1467-1482 NN denotes differentiation
T15355 1483-1486 CC denotes and
T15356 1487-1492 IN denotes under
T15357 1493-1496 PRP$ denotes our
T15358 1497-1504 NN denotes culture
T15359 1505-1515 NNS denotes conditions
T15360 1515-1516 , denotes ,
T15361 1517-1522 JJ denotes Runx3
T15362 1522-1523 FW denotes −
T15363 1523-1524 FW denotes /
T15364 1524-1525 FW denotes −
T15365 1526-1529 FW denotes CD8
T15366 1529-1530 FW denotes +
T15367 1531-1532 FW denotes T
T15368 1533-1538 NNS denotes cells
T15369 1539-1543 WDT denotes that
T15370 1544-1548 RB denotes also
T15371 1549-1558 VBZ denotes coexpress
T15372 1559-1562 CD denotes CD4
T15373 1563-1566 VBP denotes are
T15374 1567-1584 JJ denotes indistinguishable
T15375 1585-1589 IN denotes from
T15376 1590-1595 DT denotes those
T15377 1596-1600 WDT denotes that
T15378 1601-1603 VBP denotes do
T15379 1604-1607 RB denotes not
T15380 1607-1608 . denotes .
T15381 1609-1612 DT denotes The
T15382 1613-1617 NNS denotes data
T15383 1618-1627 VBN denotes presented
T15384 1628-1630 IN denotes in
T15385 1631-1634 NNP denotes Fig
T15386 1634-1635 . denotes .
T15387 1636-1638 CD denotes S2
T15388 1639-1642 VBP denotes are
T15389 1643-1647 IN denotes from
T15390 1648-1653 JJ denotes Runx3
T15391 1654-1656 NNP denotes KO
T15392 1657-1659 NNP denotes SP
T15393 1660-1665 NNS denotes cells
T15394 1665-1666 , denotes ,
T15395 1667-1674 IN denotes whereas
T15396 1675-1680 DT denotes those
T15397 1681-1686 VBN denotes shown
T15398 1687-1689 IN denotes in
T15399 1690-1695 NNP denotes Figs.
T15400 1696-1697 CD denotes 3
T15401 1698-1701 CC denotes and
T15402 1702-1703 CD denotes 4
T15403 1704-1707 VBP denotes are
T15404 1708-1712 IN denotes from
T15405 1713-1718 JJ denotes total
T15406 1719-1724 JJ denotes Runx3
T15407 1725-1727 NNP denotes KO
T15408 1728-1731 NNP denotes CD8
T15409 1732-1737 NNS denotes cells
T15410 1737-1738 . denotes .
R11619 T15057 T15057 ROOT Isolation,Isolation
R11620 T15058 T15057 prep of,Isolation
R11621 T15059 T15062 nummod CD8,cells
R11622 T15060 T15062 nummod +,cells
R11623 T15061 T15062 compound T,cells
R11624 T15062 T15058 pobj cells,of
R11625 T15063 T15057 prep from,Isolation
R11626 T15064 T15068 amod Runx3,mice
R11627 T15065 T15068 compound −,mice
R11628 T15066 T15068 compound /,mice
R11629 T15067 T15068 compound −,mice
R11630 T15068 T15063 pobj mice,from
R11631 T15069 T15057 punct .,Isolation
R11632 T15070 T15072 amod Runx3-deficient,cells
R11633 T15071 T15072 compound T,cells
R11634 T15072 T15073 nsubj cells,fail
R11635 T15073 T15073 ROOT fail,fail
R11636 T15074 T15075 aux to,silence
R11637 T15075 T15073 xcomp silence,fail
R11638 T15076 T15077 compound CD4,expression
R11639 T15077 T15075 dobj expression,silence
R11640 T15078 T15075 advmod normally,silence
R11641 T15079 T15080 punct (,Fig
R11642 T15080 T15075 parataxis Fig,silence
R11643 T15081 T15073 punct .,fail
R11644 T15082 T15082 ROOT S1,S1
R11645 T15083 T15082 punct ),S1
R11646 T15084 T15087 punct (,13
R11647 T15085 T15087 nummod 12,13
R11648 T15086 T15087 punct ",",13
R11649 T15087 T15082 appos 13,S1
R11650 T15088 T15082 punct ),S1
R11651 T15089 T15082 punct .,S1
R11652 T15090 T15093 nsubj We,fractionated
R11653 T15091 T15093 advmod therefore,fractionated
R11654 T15092 T15093 advmod further,fractionated
R11655 T15093 T15093 ROOT fractionated,fractionated
R11656 T15094 T15100 det the,cells
R11657 T15095 T15096 advmod positively,selected
R11658 T15096 T15100 amod selected,cells
R11659 T15097 T15100 compound CD8,cells
R11660 T15098 T15100 nummod +,cells
R11661 T15099 T15100 compound T,cells
R11662 T15100 T15093 dobj cells,fractionated
R11663 T15101 T15100 prep from,cells
R11664 T15102 T15103 compound Runx3,KO
R11665 T15103 T15104 compound KO,mice
R11666 T15104 T15101 pobj mice,from
R11667 T15105 T15093 prep into,fractionated
R11668 T15106 T15110 nummod CD8,SP
R11669 T15107 T15110 nummod +,SP
R11670 T15108 T15110 compound CD4,SP
R11671 T15109 T15110 compound −,SP
R11672 T15110 T15117 nmod SP,cells
R11673 T15111 T15110 cc or,SP
R11674 T15112 T15113 compound CD8,+
R11675 T15113 T15117 nmod +,cells
R11676 T15114 T15117 compound CD4,cells
R11677 T15115 T15117 compound +,cells
R11678 T15116 T15117 compound DP,cells
R11679 T15117 T15105 pobj cells,into
R11680 T15118 T15093 prep by,fractionated
R11681 T15119 T15118 pobj separation,by
R11682 T15120 T15093 advcl using,fractionated
R11683 T15121 T15123 amod anti-CD4,beads
R11684 T15122 T15123 amod magnetic,beads
R11685 T15123 T15120 dobj beads,using
R11686 T15124 T15093 punct .,fractionated
R11687 T15125 T15126 nsubj This,yielded
R11688 T15126 T15126 ROOT yielded,yielded
R11689 T15127 T15129 det a,KO
R11690 T15128 T15129 amod Runx3,KO
R11691 T15129 T15130 compound KO,SP
R11692 T15130 T15131 nsubj SP,enriched
R11693 T15131 T15132 amod enriched,population
R11694 T15132 T15126 dobj population,yielded
R11695 T15133 T15134 nsubj that,contained
R11696 T15134 T15132 relcl contained,population
R11697 T15135 T15136 nummod 75,%
R11698 T15136 T15134 dobj %,contained
R11699 T15137 T15141 nummod CD8,cells
R11700 T15138 T15141 nmod +,cells
R11701 T15139 T15141 nummod CD4,cells
R11702 T15140 T15141 compound −,cells
R11703 T15141 T15136 appos cells,%
R11704 T15142 T15141 cc and,cells
R11705 T15143 T15147 det a,population
R11706 T15144 T15145 compound KO,DP
R11707 T15145 T15147 nmod DP,population
R11708 T15146 T15147 amod enriched,population
R11709 T15147 T15141 conj population,cells
R11710 T15148 T15149 nsubj that,contained
R11711 T15149 T15147 relcl contained,population
R11712 T15150 T15151 nummod 85,%
R11713 T15151 T15149 dobj %,contained
R11714 T15152 T15156 nummod CD8,cells
R11715 T15153 T15156 nmod +,cells
R11716 T15154 T15156 nummod CD4,cells
R11717 T15155 T15156 compound +,cells
R11718 T15156 T15151 appos cells,%
R11719 T15157 T15158 punct (,Fig
R11720 T15158 T15156 appos Fig,cells
R11721 T15159 T15126 punct .,yielded
R11722 T15160 T15160 ROOT S1,S1
R11723 T15161 T15160 punct ),S1
R11724 T15162 T15160 punct .,S1
R11725 T15163 T15164 det The,cells
R11726 T15164 T15166 nsubjpass cells,stimulated
R11727 T15165 T15166 auxpass were,stimulated
R11728 T15166 T15166 ROOT stimulated,stimulated
R11729 T15167 T15166 prep with,stimulated
R11730 T15168 T15170 amod anti-CD3,anti-CD28
R11731 T15169 T15170 compound +,anti-CD28
R11732 T15170 T15167 pobj anti-CD28,with
R11733 T15171 T15166 prep for,stimulated
R11734 T15172 T15173 nummod 2,d
R11735 T15173 T15171 pobj d,for
R11736 T15174 T15166 prep before,stimulated
R11737 T15175 T15174 pcomp removing,before
R11738 T15176 T15175 dobj them,removing
R11739 T15177 T15175 prep from,removing
R11740 T15178 T15180 det the,stimulus
R11741 T15179 T15180 compound TCR,stimulus
R11742 T15180 T15177 pobj stimulus,from
R11743 T15181 T15175 cc and,removing
R11744 T15182 T15175 conj culturing,removing
R11745 T15183 T15182 dobj them,culturing
R11746 T15184 T15182 prep in,culturing
R11747 T15185 T15184 pobj media,in
R11748 T15186 T15185 acl containing,media
R11749 T15187 T15189 nummod 100,IL-2
R11750 T15188 T15189 compound U/ml,IL-2
R11751 T15189 T15186 dobj IL-2,containing
R11752 T15190 T15166 punct .,stimulated
R11753 T15191 T15193 mark As,reported
R11754 T15192 T15193 advmod previously,reported
R11755 T15193 T15208 advcl reported,impaired
R11756 T15194 T15208 punct ",",impaired
R11757 T15195 T15196 amod TCR-induced,proliferation
R11758 T15196 T15208 nsubjpass proliferation,impaired
R11759 T15197 T15196 prep of,proliferation
R11760 T15198 T15205 nmod Runx3,cells
R11761 T15199 T15205 nmod −,cells
R11762 T15200 T15205 nmod /,cells
R11763 T15201 T15205 nmod −,cells
R11764 T15202 T15205 nmod CD8,cells
R11765 T15203 T15205 nmod +,cells
R11766 T15204 T15205 compound T,cells
R11767 T15205 T15197 pobj cells,of
R11768 T15206 T15208 auxpass was,impaired
R11769 T15207 T15208 advmod severely,impaired
R11770 T15208 T15208 ROOT impaired,impaired
R11771 T15209 T15208 punct ",",impaired
R11772 T15210 T15208 advmod irrespective,impaired
R11773 T15211 T15210 prep of,irrespective
R11774 T15212 T15213 nummod CD4,expression
R11775 T15213 T15211 pobj expression,of
R11776 T15214 T15215 punct (,Fig
R11777 T15215 T15213 appos Fig,expression
R11778 T15216 T15208 punct .,impaired
R11779 T15217 T15217 ROOT S1,S1
R11780 T15218 T15217 punct ),S1
R11781 T15219 T15222 punct (,13
R11782 T15220 T15222 nummod 12,13
R11783 T15221 T15222 punct ",",13
R11784 T15222 T15217 appos 13,S1
R11785 T15223 T15217 punct ),S1
R11786 T15224 T15217 punct .,S1
R11787 T15225 T15230 advmod However,/
R11788 T15226 T15230 punct ",",/
R11789 T15227 T15229 det the,−
R11790 T15228 T15229 compound Runx3,−
R11791 T15229 T15230 nsubj −,/
R11792 T15230 T15230 ROOT /,/
R11793 T15231 T15232 nummod −,cells
R11794 T15232 T15233 nsubj cells,showed
R11795 T15233 T15230 ccomp showed,/
R11796 T15234 T15236 amod cell-surface,patterns
R11797 T15235 T15236 compound expression,patterns
R11798 T15236 T15233 dobj patterns,showed
R11799 T15237 T15236 amod indicative,patterns
R11800 T15238 T15237 prep of,indicative
R11801 T15239 T15240 amod activated,cells
R11802 T15240 T15238 pobj cells,of
R11803 T15241 T15240 punct ",",cells
R11804 T15242 T15240 prep including,cells
R11805 T15243 T15242 pobj up-regulation,including
R11806 T15244 T15243 prep of,up-regulation
R11807 T15245 T15244 pobj CD25,of
R11808 T15246 T15245 cc and,CD25
R11809 T15247 T15245 conj CD69,CD25
R11810 T15248 T15249 punct (,Fig
R11811 T15249 T15247 appos Fig,CD69
R11812 T15250 T15230 punct .,/
R11813 T15251 T15251 ROOT S1,S1
R11814 T15252 T15251 punct ),S1
R11815 T15253 T15251 punct .,S1
R11816 T15254 T15255 mark As,expected
R11817 T15255 T15271 advcl expected,responded
R11818 T15256 T15255 prep from,expected
R11819 T15257 T15258 poss their,ability
R11820 T15258 T15256 pobj ability,from
R11821 T15259 T15260 aux to,up-regulate
R11822 T15260 T15258 acl up-regulate,ability
R11823 T15261 T15260 dobj CD25,up-regulate
R11824 T15262 T15261 punct ",",CD25
R11825 T15263 T15271 nsubj Runx3,responded
R11826 T15264 T15270 nmod −,cells
R11827 T15265 T15270 nmod /,cells
R11828 T15266 T15270 nmod −,cells
R11829 T15267 T15270 nmod CD8,cells
R11830 T15268 T15270 nmod +,cells
R11831 T15269 T15270 compound T,cells
R11832 T15270 T15271 nsubj cells,responded
R11833 T15271 T15271 ROOT responded,responded
R11834 T15272 T15271 prep to,responded
R11835 T15273 T15272 pobj IL-2,to
R11836 T15274 T15271 dobj supplementation,responded
R11837 T15275 T15271 prep after,responded
R11838 T15276 T15275 pobj day,after
R11839 T15277 T15276 nummod 2,day
R11840 T15278 T15271 cc and,responded
R11841 T15279 T15280 advmod efficiently,expanded
R11842 T15280 T15271 conj expanded,responded
R11843 T15281 T15280 prep until,expanded
R11844 T15282 T15281 pobj day,until
R11845 T15283 T15282 nummod 6,day
R11846 T15284 T15282 prep of,day
R11847 T15285 T15287 det the,period
R11848 T15286 T15287 compound culture,period
R11849 T15287 T15284 pobj period,of
R11850 T15288 T15282 punct ",",day
R11851 T15289 T15280 advmod albeit,expanded
R11852 T15290 T15280 prep at,expanded
R11853 T15291 T15292 amod slower,rates
R11854 T15292 T15290 pobj rates,at
R11855 T15293 T15271 prep compared,responded
R11856 T15294 T15293 prep with,compared
R11857 T15295 T15296 compound WT,cells
R11858 T15296 T15294 pobj cells,with
R11859 T15297 T15298 punct (,Fig
R11860 T15298 T15296 appos Fig,cells
R11861 T15299 T15271 punct .,responded
R11862 T15300 T15300 ROOT S1,S1
R11863 T15301 T15300 punct ),S1
R11864 T15302 T15300 punct .,S1
R11865 T15303 T15311 mark Although,silenced
R11866 T15304 T15305 det a,fraction
R11867 T15305 T15311 nsubj fraction,silenced
R11868 T15306 T15305 prep of,fraction
R11869 T15307 T15310 det the,cells
R11870 T15308 T15310 compound KO,cells
R11871 T15309 T15310 compound DP,cells
R11872 T15310 T15306 pobj cells,of
R11873 T15311 T15326 advcl silenced,remained
R11874 T15312 T15313 nummod CD4,expression
R11875 T15313 T15311 dobj expression,silenced
R11876 T15314 T15311 prep after,silenced
R11877 T15315 T15314 pobj activation,after
R11878 T15316 T15326 punct ",",remained
R11879 T15317 T15318 det the,ratio
R11880 T15318 T15326 nsubj ratio,remained
R11881 T15319 T15318 prep of,ratio
R11882 T15320 T15321 compound SP/DP,cells
R11883 T15321 T15319 pobj cells,of
R11884 T15322 T15318 prep in,ratio
R11885 T15323 T15325 det each,population
R11886 T15324 T15325 amod enriched,population
R11887 T15325 T15322 pobj population,in
R11888 T15326 T15326 ROOT remained,remained
R11889 T15327 T15326 acomp constant,remained
R11890 T15328 T15326 advmod thereafter,remained
R11891 T15329 T15326 punct ",",remained
R11892 T15330 T15326 cc and,remained
R11893 T15331 T15334 nsubj we,observe
R11894 T15332 T15334 aux did,observe
R11895 T15333 T15334 neg not,observe
R11896 T15334 T15326 conj observe,remained
R11897 T15335 T15337 det any,differences
R11898 T15336 T15337 amod major,differences
R11899 T15337 T15334 dobj differences,observe
R11900 T15338 T15337 prep between,differences
R11901 T15339 T15341 det these,populations
R11902 T15340 T15341 nummod two,populations
R11903 T15341 T15338 pobj populations,between
R11904 T15342 T15334 prep throughout,observe
R11905 T15343 T15345 det the,period
R11906 T15344 T15345 compound culture,period
R11907 T15345 T15342 pobj period,throughout
R11908 T15346 T15334 punct ",",observe
R11909 T15347 T15334 advcl indicating,observe
R11910 T15348 T15373 mark that,are
R11911 T15349 T15373 prep in,are
R11912 T15350 T15349 pobj terms,in
R11913 T15351 T15350 prep of,terms
R11914 T15352 T15354 compound effector,differentiation
R11915 T15353 T15354 compound CTL,differentiation
R11916 T15354 T15351 pobj differentiation,of
R11917 T15355 T15349 cc and,in
R11918 T15356 T15349 conj under,in
R11919 T15357 T15359 poss our,conditions
R11920 T15358 T15359 compound culture,conditions
R11921 T15359 T15356 pobj conditions,under
R11922 T15360 T15368 punct ",",cells
R11923 T15361 T15368 amod Runx3,cells
R11924 T15362 T15366 nmod −,+
R11925 T15363 T15366 nmod /,+
R11926 T15364 T15366 nmod −,+
R11927 T15365 T15366 nmod CD8,+
R11928 T15366 T15368 nmod +,cells
R11929 T15367 T15368 compound T,cells
R11930 T15368 T15373 nsubj cells,are
R11931 T15369 T15371 nsubj that,coexpress
R11932 T15370 T15371 advmod also,coexpress
R11933 T15371 T15368 relcl coexpress,cells
R11934 T15372 T15371 dobj CD4,coexpress
R11935 T15373 T15347 ccomp are,indicating
R11936 T15374 T15373 acomp indistinguishable,are
R11937 T15375 T15374 prep from,indistinguishable
R11938 T15376 T15375 pobj those,from
R11939 T15377 T15378 nsubj that,do
R11940 T15378 T15376 relcl do,those
R11941 T15379 T15378 neg not,do
R11942 T15380 T15334 punct .,observe
R11943 T15381 T15382 det The,data
R11944 T15382 T15382 ROOT data,data
R11945 T15383 T15382 acl presented,data
R11946 T15384 T15383 prep in,presented
R11947 T15385 T15384 pobj Fig,in
R11948 T15386 T15383 punct .,presented
R11949 T15387 T15388 nsubj S2,are
R11950 T15388 T15388 ROOT are,are
R11951 T15389 T15388 prep from,are
R11952 T15390 T15391 amod Runx3,KO
R11953 T15391 T15393 compound KO,cells
R11954 T15392 T15393 compound SP,cells
R11955 T15393 T15389 pobj cells,from
R11956 T15394 T15388 punct ",",are
R11957 T15395 T15403 mark whereas,are
R11958 T15396 T15403 nsubj those,are
R11959 T15397 T15396 acl shown,those
R11960 T15398 T15397 prep in,shown
R11961 T15399 T15398 pobj Figs.,in
R11962 T15400 T15399 nummod 3,Figs.
R11963 T15401 T15397 cc and,shown
R11964 T15402 T15403 nsubj 4,are
R11965 T15403 T15388 advcl are,are
R11966 T15404 T15403 prep from,are
R11967 T15405 T15407 amod total,KO
R11968 T15406 T15407 compound Runx3,KO
R11969 T15407 T15409 compound KO,cells
R11970 T15408 T15409 compound CD8,cells
R11971 T15409 T15404 pobj cells,from
R11972 T15410 T15388 punct .,are

GO-BP

Id Subject Object Predicate Lexical cue
T15053 552-555 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T15054 643-646 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T15055 850-865 http://purl.obolibrary.org/obo/GO_0001775 denotes activated cells
T15056 880-890 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-MF

Id Subject Object Predicate Lexical cue
T15774 613-617 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2
T15775 1006-1010 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T15776 20-25 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15777 64-69 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15778 195-200 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15779 252-257 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15780 380-385 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15781 446-451 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15782 467-472 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15783 688-693 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15784 790-795 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15785 860-865 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15786 987-992 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15787 1139-1144 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15788 1189-1194 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15789 1256-1261 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15790 1533-1538 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15791 1660-1665 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15792 1732-1737 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15793 552-555 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T15794 643-646 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T15795 803-815 http://purl.obolibrary.org/obo/GO_0009986 denotes cell-surface

sentences

Id Subject Object Predicate Lexical cue
T15043 0-45 Sentence denotes Isolation of CD8+ T cells from Runx3−/− mice.
T15044 46-129 Sentence denotes Runx3-deficient T cells fail to silence CD4 expression normally (Fig. S1) (12, 13).
T15045 130-302 Sentence denotes We therefore further fractionated the positively selected CD8+ T cells from Runx3 KO mice into CD8+CD4− SP or CD8+CD4+ DP cells by separation using anti-CD4 magnetic beads.
T15046 303-462 Sentence denotes This yielded a Runx3 KO SP “enriched” population that contained 75% CD8+CD4− cells and a KO DP enriched population that contained 85% CD8+CD4+ cells (Fig. S1).
T15047 463-618 Sentence denotes The cells were stimulated with anti-CD3+ anti-CD28 for 2 d before removing them from the TCR stimulus and culturing them in media containing 100 U/ml IL-2.
T15048 619-767 Sentence denotes As previously reported, TCR-induced proliferation of Runx3−/− CD8+ T cells was severely impaired, irrespective of CD4 expression (Fig. S1) (12, 13).
T15049 768-918 Sentence denotes However, the Runx3−/− cells showed cell-surface expression patterns indicative of activated cells, including up-regulation of CD25 and CD69 (Fig. S1).
T15050 919-1155 Sentence denotes As expected from their ability to up-regulate CD25, Runx3−/− CD8+ T cells responded to IL-2 supplementation after day 2 and efficiently expanded until day 6 of the culture period, albeit at slower rates compared with WT cells (Fig. S1).
T15051 1156-1608 Sentence denotes Although a fraction of the KO DP cells silenced CD4 expression after activation, the ratio of SP/DP cells in each enriched population remained constant thereafter, and we did not observe any major differences between these two populations throughout the culture period, indicating that in terms of effector CTL differentiation and under our culture conditions, Runx3−/− CD8+ T cells that also coexpress CD4 are indistinguishable from those that do not.
T15052 1609-1738 Sentence denotes The data presented in Fig. S2 are from Runx3 KO SP cells, whereas those shown in Figs. 3 and 4 are from total Runx3 KO CD8 cells.
T164 0-45 Sentence denotes Isolation of CD8+ T cells from Runx3−/− mice.
T165 46-129 Sentence denotes Runx3-deficient T cells fail to silence CD4 expression normally (Fig. S1) (12, 13).
T166 130-302 Sentence denotes We therefore further fractionated the positively selected CD8+ T cells from Runx3 KO mice into CD8+CD4− SP or CD8+CD4+ DP cells by separation using anti-CD4 magnetic beads.
T167 303-462 Sentence denotes This yielded a Runx3 KO SP “enriched” population that contained 75% CD8+CD4− cells and a KO DP enriched population that contained 85% CD8+CD4+ cells (Fig. S1).
T168 463-618 Sentence denotes The cells were stimulated with anti-CD3+ anti-CD28 for 2 d before removing them from the TCR stimulus and culturing them in media containing 100 U/ml IL-2.
T169 619-767 Sentence denotes As previously reported, TCR-induced proliferation of Runx3−/− CD8+ T cells was severely impaired, irrespective of CD4 expression (Fig. S1) (12, 13).
T170 768-918 Sentence denotes However, the Runx3−/− cells showed cell-surface expression patterns indicative of activated cells, including up-regulation of CD25 and CD69 (Fig. S1).
T171 919-1155 Sentence denotes As expected from their ability to up-regulate CD25, Runx3−/− CD8+ T cells responded to IL-2 supplementation after day 2 and efficiently expanded until day 6 of the culture period, albeit at slower rates compared with WT cells (Fig. S1).
T172 1156-1608 Sentence denotes Although a fraction of the KO DP cells silenced CD4 expression after activation, the ratio of SP/DP cells in each enriched population remained constant thereafter, and we did not observe any major differences between these two populations throughout the culture period, indicating that in terms of effector CTL differentiation and under our culture conditions, Runx3−/− CD8+ T cells that also coexpress CD4 are indistinguishable from those that do not.
T173 1609-1695 Sentence denotes The data presented in Fig. S2 are from Runx3 KO SP cells, whereas those shown in Figs.
T174 1696-1738 Sentence denotes 3 and 4 are from total Runx3 KO CD8 cells.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T16026 318-323 Protein denotes Runx3
T16027 371-374 Protein denotes CD8
T16028 375-378 Protein denotes CD4
T16029 437-440 Protein denotes CD8
T16030 441-444 Protein denotes CD4
T16031 499-502 Protein denotes CD3
T16032 509-513 Protein denotes CD28
T16033 613-617 Protein denotes IL-2
T16034 672-677 Protein denotes Runx3
T16035 681-684 Protein denotes CD8
T16036 733-736 Protein denotes CD4
T16037 737-747 Gene_expression denotes expression
T16038 781-786 Protein denotes Runx3
T16039 877-890 Positive_regulation denotes up-regulation
T16040 877-890 Positive_regulation denotes up-regulation
T16041 894-898 Protein denotes CD25
T16042 903-907 Protein denotes CD69
T16043 953-964 Positive_regulation denotes up-regulate
T16044 965-969 Protein denotes CD25
T16045 971-976 Protein denotes Runx3
T16046 980-983 Protein denotes CD8
T16047 1006-1010 Protein denotes IL-2
T16048 1195-1203 Negative_regulation denotes silenced
T16049 1204-1207 Protein denotes CD4
T16050 1208-1218 Gene_expression denotes expression
T16051 1517-1522 Protein denotes Runx3
T16052 1526-1529 Protein denotes CD8
T16053 1549-1558 Gene_expression denotes coexpress
T16054 1559-1562 Protein denotes CD4
T16055 1648-1653 Protein denotes Runx3
T16056 1719-1724 Protein denotes Runx3
T16057 1728-1731 Protein denotes CD8
T16013 31-36 Protein denotes Runx3
T16014 46-51 Protein denotes Runx3
T16015 52-61 Negative_regulation denotes deficient
T16016 78-85 Negative_regulation denotes silence true
T16017 86-89 Protein denotes CD4
T16018 90-100 Gene_expression denotes expression
T16019 188-191 Protein denotes CD8
T16020 206-211 Protein denotes Runx3
T16021 225-228 Protein denotes CD8
T16022 229-232 Protein denotes CD4
T16023 240-243 Protein denotes CD8
T16024 244-247 Protein denotes CD4
T16025 283-286 Protein denotes CD4
R12328 T16014 T16015 themeOf Runx3,deficient
R12329 T16015 T16016 causeOf deficient,silence
R12330 T16017 T16018 themeOf CD4,expression
R12331 T16018 T16016 themeOf expression,silence
R12332 T16036 T16037 themeOf CD4,expression
R12333 T16041 T16039 themeOf CD25,up-regulation
R12334 T16042 T16040 themeOf CD69,up-regulation
R12335 T16044 T16043 themeOf CD25,up-regulate
R12336 T16049 T16050 themeOf CD4,expression
R12337 T16050 T16048 themeOf expression,silenced
R12338 T16054 T16053 themeOf CD4,coexpress

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T16058 13-17 Protein denotes CD8+
T16059 31-36 Protein denotes Runx3
T16060 46-51 Protein denotes Runx3
T16061 86-89 Protein denotes CD4
T16062 52-61 Negative_regulation denotes deficient
T16063 90-100 Gene_expression denotes expression
T16064 78-85 Negative_regulation denotes silence
T16065 188-192 Protein denotes CD8+
T16066 206-214 Protein denotes Runx3 KO
T16067 225-228 Protein denotes CD8
T16068 229-232 Protein denotes CD4
T16069 234-236 Protein denotes SP
T16070 240-243 Protein denotes CD8
T16071 244-247 Protein denotes CD4
T16072 318-326 Protein denotes Runx3 KO
T16073 371-374 Protein denotes CD8
T16074 375-378 Protein denotes CD4
T16075 437-440 Protein denotes CD8
T16076 441-444 Protein denotes CD4
T16077 494-502 Protein denotes anti-CD3
T16078 504-513 Protein denotes anti-CD28
T16079 552-555 Protein denotes TCR
T16080 643-646 Protein denotes TCR
T16081 672-677 Protein denotes Runx3
T16082 681-684 Protein denotes CD8
T16083 733-736 Protein denotes CD4
T16084 737-747 Gene_expression denotes expression
T16085 781-786 Protein denotes Runx3
T16086 894-898 Protein denotes CD25
T16087 903-907 Protein denotes CD69
T16088 909-912 Protein denotes Fig
T16089 914-916 Protein denotes S1
T16090 877-890 Positive_regulation denotes up-regulation
T16091 877-890 Positive_regulation denotes up-regulation
T16092 877-890 Positive_regulation denotes up-regulation
T16093 965-969 Protein denotes CD25
T16094 971-976 Protein denotes Runx3
T16095 980-983 Protein denotes CD8
T16096 1006-1010 Protein denotes IL-2
T16097 953-964 Positive_regulation denotes up-regulate
T16098 1204-1207 Protein denotes CD4
T16099 1517-1522 Protein denotes Runx3
T16100 1526-1529 Protein denotes CD8
T16101 1559-1562 Protein denotes CD4
T16102 1208-1218 Gene_expression denotes expression
T16103 1549-1558 Gene_expression denotes coexpress
T16104 1195-1203 Negative_regulation denotes silenced
T16105 1631-1634 Protein denotes Fig
T16106 1618-1627 Gene_expression denotes presented
T16107 1636-1638 Protein denotes S2
T16108 1648-1656 Protein denotes Runx3 KO
T16109 1719-1724 Protein denotes Runx3
T16110 1725-1731 Protein denotes KO CD8
R12339 T16060 T16062 themeOf Runx3,deficient
R12340 T16061 T16063 themeOf CD4,expression
R12341 T16062 T16064 causeOf deficient,silence
R12342 T16063 T16064 themeOf expression,silence
R12343 T16083 T16084 themeOf CD4,expression
R12344 T16086 T16090 themeOf CD25,up-regulation
R12345 T16087 T16091 themeOf CD69,up-regulation
R12346 T16089 T16092 themeOf S1,up-regulation
R12347 T16093 T16097 themeOf CD25,up-regulate
R12348 T16098 T16102 themeOf CD4,expression
R12349 T16101 T16103 themeOf CD4,coexpress
R12350 T16102 T16104 themeOf expression,silenced
R12351 T16105 T16106 themeOf Fig,presented

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T15042 1728-1731 Protein denotes CD8
T14998 31-36 Protein denotes Runx3
T14999 46-51 Protein denotes Runx3
T15000 52-61 Negative_regulation denotes deficient
T15001 78-85 Negative_regulation denotes silence true
T15002 86-89 Protein denotes CD4
T15003 90-100 Gene_expression denotes expression
T15004 188-191 Protein denotes CD8
T15005 206-211 Protein denotes Runx3
T15006 225-228 Protein denotes CD8
T15007 229-232 Protein denotes CD4
T15008 240-243 Protein denotes CD8
T15009 244-247 Protein denotes CD4
T15010 283-286 Protein denotes CD4
T15011 318-323 Protein denotes Runx3
T15012 371-374 Protein denotes CD8
T15013 375-378 Protein denotes CD4
T15014 437-440 Protein denotes CD8
T15015 441-444 Protein denotes CD4
T15016 499-502 Protein denotes CD3
T15017 509-513 Protein denotes CD28
T15018 613-617 Protein denotes IL-2
T15019 672-677 Protein denotes Runx3
T15020 681-684 Protein denotes CD8
T15021 733-736 Protein denotes CD4
T15022 737-747 Gene_expression denotes expression
T15023 781-786 Protein denotes Runx3
T15024 877-890 Positive_regulation denotes up-regulation
T15025 877-890 Positive_regulation denotes up-regulation
T15026 894-898 Protein denotes CD25
T15027 903-907 Protein denotes CD69
T15028 953-964 Positive_regulation denotes up-regulate
T15029 965-969 Protein denotes CD25
T15030 971-976 Protein denotes Runx3
T15031 980-983 Protein denotes CD8
T15032 1006-1010 Protein denotes IL-2
T15033 1195-1203 Negative_regulation denotes silenced
T15034 1204-1207 Protein denotes CD4
T15035 1208-1218 Gene_expression denotes expression
T15036 1517-1522 Protein denotes Runx3
T15037 1526-1529 Protein denotes CD8
T15038 1549-1558 Gene_expression denotes coexpress
T15039 1559-1562 Protein denotes CD4
T15040 1648-1653 Protein denotes Runx3
T15041 1719-1724 Protein denotes Runx3
R11608 T14999 T15000 themeOf Runx3,deficient
R11609 T15000 T15001 causeOf deficient,silence
R11610 T15002 T15003 themeOf CD4,expression
R11611 T15003 T15001 themeOf expression,silence
R11612 T15021 T15022 themeOf CD4,expression
R11613 T15026 T15024 themeOf CD25,up-regulation
R11614 T15027 T15025 themeOf CD69,up-regulation
R11615 T15029 T15028 themeOf CD25,up-regulate
R11616 T15034 T15035 themeOf CD4,expression
R11617 T15035 T15033 themeOf expression,silenced
R11618 T15039 T15038 themeOf CD4,coexpress

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15750 965-969 P01589 denotes CD25
T15751 971-976 Q13761 denotes Runx3
T15752 980-983 P01732 denotes CD8
T15753 980-983 P10966 denotes CD8
T15754 1006-1010 P60568 denotes IL-2
T15755 1204-1207 P01730 denotes CD4
T15756 1517-1522 Q13761 denotes Runx3
T15757 1526-1529 P01732 denotes CD8
T15758 1526-1529 P10966 denotes CD8
T15759 1559-1562 P01730 denotes CD4
T15760 1648-1653 Q13761 denotes Runx3
T15761 1719-1724 Q13761 denotes Runx3
T15762 1728-1731 P10966 denotes CD8
T15763 1728-1731 P01732 denotes CD8
T15716 13-16 P01732 denotes CD8
T15717 13-16 P10966 denotes CD8
T15718 31-36 Q13761 denotes Runx3
T15719 46-51 Q13761 denotes Runx3
T15720 86-89 P01730 denotes CD4
T15721 188-191 P10966 denotes CD8
T15722 188-191 P01732 denotes CD8
T15723 206-211 Q13761 denotes Runx3
T15724 225-228 P10966 denotes CD8
T15725 225-228 P01732 denotes CD8
T15726 229-232 P01730 denotes CD4
T15727 240-243 P01732 denotes CD8
T15728 240-243 P10966 denotes CD8
T15729 244-247 P01730 denotes CD4
T15730 283-286 P01730 denotes CD4
T15731 318-323 Q13761 denotes Runx3
T15732 371-374 P01732 denotes CD8
T15733 371-374 P10966 denotes CD8
T15734 375-378 P01730 denotes CD4
T15735 437-440 P01732 denotes CD8
T15736 437-440 P10966 denotes CD8
T15737 441-444 P01730 denotes CD4
T15738 499-502 P20963 denotes CD3
T15739 499-502 P09693 denotes CD3
T15740 499-502 P04234 denotes CD3
T15741 499-502 P07766 denotes CD3
T15742 509-513 P10747 denotes CD28
T15743 613-617 P60568 denotes IL-2
T15744 672-677 Q13761 denotes Runx3
T15745 681-684 P10966 denotes CD8
T15746 681-684 P01732 denotes CD8
T15747 733-736 P01730 denotes CD4
T15748 781-786 Q13761 denotes Runx3
T15749 894-898 P01589 denotes CD25

test2

Id Subject Object Predicate Lexical cue Negation
T14952 31-36 Protein denotes Runx3
T14953 46-51 Protein denotes Runx3 true
T14954 52-61 Negative_regulation denotes deficient
T14955 78-85 Negative_regulation denotes silence
T14956 86-89 Protein denotes CD4
T14957 90-100 Gene_expression denotes expression
T14958 188-191 Protein denotes CD8
T14959 206-211 Protein denotes Runx3
T14960 225-228 Protein denotes CD8
T14961 229-232 Protein denotes CD4
T14962 240-243 Protein denotes CD8
T14963 244-247 Protein denotes CD4
T14964 283-286 Protein denotes CD4
T14965 318-323 Protein denotes Runx3
T14966 371-374 Protein denotes CD8
T14967 375-378 Protein denotes CD4
T14968 437-440 Protein denotes CD8
T14969 441-444 Protein denotes CD4
T14970 499-502 Protein denotes CD3
T14971 509-513 Protein denotes CD28
T14972 613-617 Protein denotes IL-2
T14973 672-677 Protein denotes Runx3
T14974 681-684 Protein denotes CD8
T14975 707-715 Negative_regulation denotes impaired
T14976 733-736 Protein denotes CD4
T14977 737-747 Gene_expression denotes expression
T14978 781-786 Protein denotes Runx3
T14979 877-890 Positive_regulation denotes up-regulation
T14980 894-898 Protein denotes CD25
T14981 903-907 Protein denotes CD69
T14982 953-964 Positive_regulation denotes up-regulate
T14983 965-969 Protein denotes CD25
T14984 971-976 Protein denotes Runx3
T14985 980-983 Protein denotes CD8
T14986 1006-1010 Protein denotes IL-2
T14987 1011-1026 Negative_regulation denotes supplementation
T14988 1195-1203 Negative_regulation denotes silenced
T14989 1204-1207 Protein denotes CD4
T14990 1208-1218 Gene_expression denotes expression
T14991 1517-1522 Protein denotes Runx3
T14992 1526-1529 Protein denotes CD8
T14993 1549-1558 Gene_expression denotes coexpress
T14994 1559-1562 Protein denotes CD4
T14995 1648-1653 Protein denotes Runx3
T14996 1719-1724 Protein denotes Runx3
T14997 1728-1731 Protein denotes CD8
R11595 T14953 T14954 themeOf Runx3,deficient
R11596 T14954 T14955 causeOf deficient,silence
R11597 T14956 T14957 themeOf CD4,expression
R11598 T14957 T14955 themeOf expression,silence
R11599 T14976 T14977 themeOf CD4,expression
R11600 T14977 T14975 themeOf expression,impaired
R11601 T14980 T14979 themeOf CD25,up-regulation
R11602 T14981 T14979 themeOf CD69,up-regulation
R11603 T14983 T14982 themeOf CD25,up-regulate
R11604 T14986 T14987 themeOf IL-2,supplementation
R11605 T14989 T14990 themeOf CD4,expression
R11606 T14990 T14988 themeOf expression,silenced
R11607 T14994 T14993 themeOf CD4,coexpress