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PMC:2626671 / 26694-27122 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14680 0-3 DT denotes All
T14681 4-8 NN denotes mice
T14682 9-13 VB denotes were
T14683 14-24 VB denotes maintained
T14684 25-27 IN denotes in
T14685 28-36 JJ denotes specific
T14686 37-50 JJ denotes pathogen-free
T14687 51-58 NN denotes barrier
T14688 59-69 NN denotes facilities
T14689 70-73 CC denotes and
T14690 74-78 VB denotes used
T14691 79-88 VB denotes according
T14692 89-91 TO denotes to
T14693 92-101 NN denotes protocols
T14694 102-110 VB denotes approved
T14695 111-113 IN denotes by
T14696 114-117 DT denotes the
T14697 118-124 NNP denotes Immune
T14698 125-132 NNP denotes Disease
T14699 133-142 NNP denotes Institute
T14700 143-146 CC denotes and
T14701 147-150 DT denotes the
T14702 151-158 NNP denotes Harvard
T14703 159-166 NNP denotes Medical
T14704 167-173 NNP denotes School
T14705 174-180 NNP denotes Animal
T14706 181-185 NNP denotes Care
T14707 186-189 CC denotes and
T14708 190-193 NNP denotes Use
T14709 194-205 NNP denotes Committees.
T14710 206-209 IN denotes For
T14711 210-221 NN denotes stimulation
T14712 221-222 -COMMA- denotes ,
T14713 223-231 VB denotes purified
T14714 232-236 JJ denotes CD8+
T14715 237-238 NN denotes T
T14716 239-244 NN denotes cells
T14717 245-249 VB denotes were
T14718 250-258 VB denotes cultured
T14719 259-261 IN denotes at
T14720 262-265 CD denotes 106
T14721 266-274 NN denotes cells/ml
T14722 275-276 -LRB- denotes (
T14723 276-278 CD denotes 10
T14724 279-281 NN denotes ml
T14725 281-282 -RRB- denotes )
T14726 283-285 IN denotes in
T14727 286-289 NN denotes T25
T14728 290-296 NN denotes flasks
T14729 297-303 VB denotes coated
T14730 304-308 IN denotes with
T14731 309-310 CD denotes 1
T14732 311-316 NN denotes μg/ml
T14733 317-321 DT denotes each
T14734 322-324 IN denotes of
T14735 325-333 NN denotes anti-CD3
T14736 334-335 -LRB- denotes (
T14737 335-340 NN denotes clone
T14738 341-345 NN denotes 2C11
T14739 345-346 -RRB- denotes )
T14740 347-350 CC denotes and
T14741 351-360 JJ denotes anti-CD28
T14742 361-362 -LRB- denotes (
T14743 362-367 NN denotes clone
T14744 368-373 CD denotes 37.51
T14745 373-374 -RRB- denotes )
T14746 375-377 IN denotes by
T14747 378-390 NN denotes pretreatment
T14748 391-395 IN denotes with
T14749 396-399 CD denotes 300
T14750 400-405 NN denotes μg/ml
T14751 406-410 NN denotes goat
T14752 411-423 NN denotes anti–hamster
T14753 424-427 NN denotes IgG
R11453 T14681 T14680 arg1Of mice,All
R11454 T14681 T14682 arg1Of mice,were
R11455 T14681 T14683 arg2Of mice,maintained
R11456 T14681 T14690 arg2Of mice,used
R11457 T14683 T14684 arg1Of maintained,in
R11458 T14683 T14689 arg1Of maintained,and
R11459 T14688 T14684 arg2Of facilities,in
R11460 T14688 T14685 arg1Of facilities,specific
R11461 T14688 T14686 arg1Of facilities,pathogen-free
R11462 T14688 T14687 arg1Of facilities,barrier
R11463 T14689 T14682 arg2Of and,were
R11464 T14689 T14712 arg1Of and,","
R11465 T14690 T14689 arg2Of used,and
R11466 T14690 T14691 arg1Of used,according
R11467 T14690 T14710 arg1Of used,For
R11468 T14692 T14691 arg2Of to,according
R11469 T14693 T14694 arg2Of protocols,approved
R11470 T14693 T14700 arg1Of protocols,and
R11471 T14699 T14694 arg1Of Institute,approved
R11472 T14699 T14695 arg2Of Institute,by
R11473 T14699 T14696 arg1Of Institute,the
R11474 T14699 T14697 arg1Of Institute,Immune
R11475 T14699 T14698 arg1Of Institute,Disease
R11476 T14700 T14692 arg2Of and,to
R11477 T14706 T14702 arg1Of Care,Harvard
R11478 T14706 T14703 arg1Of Care,Medical
R11479 T14706 T14704 arg1Of Care,School
R11480 T14706 T14705 arg1Of Care,Animal
R11481 T14706 T14707 arg1Of Care,and
R11482 T14708 T14707 arg2Of Use,and
R11483 T14709 T14700 arg2Of Committees.,and
R11484 T14709 T14701 arg1Of Committees.,the
R11485 T14709 T14706 arg1Of Committees.,Care
R11486 T14709 T14708 arg1Of Committees.,Use
R11487 T14711 T14710 arg2Of stimulation,For
R11488 T14716 T14713 arg2Of cells,purified
R11489 T14716 T14714 arg1Of cells,CD8+
R11490 T14716 T14715 arg1Of cells,T
R11491 T14716 T14717 arg1Of cells,were
R11492 T14716 T14718 arg2Of cells,cultured
R11493 T14718 T14712 arg2Of cultured,","
R11494 T14718 T14717 arg2Of cultured,were
R11495 T14718 T14719 arg1Of cultured,at
R11496 T14721 T14719 arg2Of cells/ml,at
R11497 T14721 T14720 arg1Of cells/ml,106
R11498 T14721 T14722 arg1Of cells/ml,(
R11499 T14721 T14726 arg1Of cells/ml,in
R11500 T14724 T14722 arg2Of ml,(
R11501 T14724 T14723 arg1Of ml,10
R11502 T14725 T14722 arg3Of ),(
R11503 T14728 T14726 arg2Of flasks,in
R11504 T14728 T14727 arg1Of flasks,T25
R11505 T14728 T14729 arg2Of flasks,coated
R11506 T14729 T14730 arg1Of coated,with
R11507 T14732 T14730 arg2Of μg/ml,with
R11508 T14732 T14731 arg1Of μg/ml,1
R11509 T14732 T14733 arg1Of μg/ml,each
R11510 T14732 T14734 arg1Of μg/ml,of
R11511 T14735 T14736 arg1Of anti-CD3,(
R11512 T14735 T14740 arg1Of anti-CD3,and
R11513 T14738 T14736 arg2Of 2C11,(
R11514 T14738 T14737 arg1Of 2C11,clone
R11515 T14739 T14736 arg3Of ),(
R11516 T14740 T14734 arg2Of and,of
R11517 T14740 T14746 arg1Of and,by
R11518 T14743 T14740 arg2Of clone,and
R11519 T14743 T14741 arg1Of clone,anti-CD28
R11520 T14743 T14742 arg2Of clone,(
R11521 T14743 T14744 arg1Of clone,37.51
R11522 T14745 T14742 arg3Of ),(
R11523 T14747 T14746 arg2Of pretreatment,by
R11524 T14747 T14748 arg1Of pretreatment,with
R11525 T14753 T14748 arg2Of IgG,with
R11526 T14753 T14749 arg1Of IgG,300
R11527 T14753 T14750 arg1Of IgG,μg/ml
R11528 T14753 T14751 arg1Of IgG,goat
R11529 T14753 T14752 arg1Of IgG,anti–hamster

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14471 0-3 DT denotes All
T14472 4-8 NNS denotes mice
T14473 9-13 VBD denotes were
T14474 14-24 VBN denotes maintained
T14475 25-27 IN denotes in
T14476 28-36 JJ denotes specific
T14477 37-50 JJ denotes pathogen-free
T14478 51-58 NN denotes barrier
T14479 59-69 NNS denotes facilities
T14480 70-73 CC denotes and
T14481 74-78 VBN denotes used
T14482 79-88 VBG denotes according
T14483 89-91 TO denotes to
T14484 92-101 NNS denotes protocols
T14485 102-110 VBN denotes approved
T14486 111-113 IN denotes by
T14487 114-117 DT denotes the
T14488 118-124 NNP denotes Immune
T14489 125-132 NNP denotes Disease
T14490 133-142 NNP denotes Institute
T14491 143-146 CC denotes and
T14492 147-150 DT denotes the
T14493 151-158 NNP denotes Harvard
T14494 159-166 NNP denotes Medical
T14495 167-173 NNP denotes School
T14496 174-180 NNP denotes Animal
T14497 181-185 NNP denotes Care
T14498 186-189 CC denotes and
T14499 190-193 NNP denotes Use
T14500 194-204 NNS denotes Committees
T14501 204-205 . denotes .
T14502 206-209 IN denotes For
T14503 210-221 NN denotes stimulation
T14504 221-222 , denotes ,
T14505 223-231 VBN denotes purified
T14506 232-235 NNP denotes CD8
T14507 235-236 CD denotes +
T14508 237-238 NNP denotes T
T14509 239-244 NNS denotes cells
T14510 245-249 VBD denotes were
T14511 250-258 VBN denotes cultured
T14512 259-261 IN denotes at
T14513 262-265 CD denotes 106
T14514 266-274 NN denotes cells/ml
T14515 275-276 -LRB- denotes (
T14516 276-278 CD denotes 10
T14517 279-281 NN denotes ml
T14518 281-282 -RRB- denotes )
T14519 283-285 IN denotes in
T14520 286-289 CD denotes T25
T14521 290-296 NNS denotes flasks
T14522 297-303 VBN denotes coated
T14523 304-308 IN denotes with
T14524 309-310 CD denotes 1
T14525 311-313 NN denotes μg
T14526 313-314 NN denotes /
T14527 314-316 NN denotes ml
T14528 317-321 DT denotes each
T14529 322-324 IN denotes of
T14530 325-333 JJ denotes anti-CD3
T14531 334-335 -LRB- denotes (
T14532 335-340 JJ denotes clone
T14533 341-345 NNP denotes 2C11
T14534 345-346 -RRB- denotes )
T14535 347-350 CC denotes and
T14536 351-360 JJ denotes anti-CD28
T14537 361-362 -LRB- denotes (
T14538 362-367 JJ denotes clone
T14539 368-373 CD denotes 37.51
T14540 373-374 -RRB- denotes )
T14541 375-377 IN denotes by
T14542 378-390 NN denotes pretreatment
T14543 391-395 IN denotes with
T14544 396-399 CD denotes 300
T14545 400-402 NN denotes μg
T14546 402-403 NN denotes /
T14547 403-405 NN denotes ml
T14548 406-410 NN denotes goat
T14549 411-415 NNS denotes anti
T14550 416-423 NN denotes hamster
T14551 424-427 NNP denotes IgG
T14552 427-428 . denotes .
R11244 T14471 T14472 det All,mice
R11245 T14472 T14474 nsubjpass mice,maintained
R11246 T14473 T14474 auxpass were,maintained
R11247 T14474 T14474 ROOT maintained,maintained
R11248 T14475 T14474 prep in,maintained
R11249 T14476 T14479 amod specific,facilities
R11250 T14477 T14479 amod pathogen-free,facilities
R11251 T14478 T14479 compound barrier,facilities
R11252 T14479 T14475 pobj facilities,in
R11253 T14480 T14474 cc and,maintained
R11254 T14481 T14474 conj used,maintained
R11255 T14482 T14481 prep according,used
R11256 T14483 T14482 prep to,according
R11257 T14484 T14483 pobj protocols,to
R11258 T14485 T14484 acl approved,protocols
R11259 T14486 T14485 agent by,approved
R11260 T14487 T14490 det the,Institute
R11261 T14488 T14490 compound Immune,Institute
R11262 T14489 T14490 compound Disease,Institute
R11263 T14490 T14486 pobj Institute,by
R11264 T14491 T14490 cc and,Institute
R11265 T14492 T14497 det the,Care
R11266 T14493 T14495 compound Harvard,School
R11267 T14494 T14495 compound Medical,School
R11268 T14495 T14497 compound School,Care
R11269 T14496 T14497 compound Animal,Care
R11270 T14497 T14490 conj Care,Institute
R11271 T14498 T14497 cc and,Care
R11272 T14499 T14497 conj Use,Care
R11273 T14500 T14497 conj Committees,Care
R11274 T14501 T14474 punct .,maintained
R11275 T14502 T14511 prep For,cultured
R11276 T14503 T14502 pobj stimulation,For
R11277 T14504 T14511 punct ",",cultured
R11278 T14505 T14509 amod purified,cells
R11279 T14506 T14509 nmod CD8,cells
R11280 T14507 T14509 nummod +,cells
R11281 T14508 T14509 compound T,cells
R11282 T14509 T14511 nsubjpass cells,cultured
R11283 T14510 T14511 auxpass were,cultured
R11284 T14511 T14511 ROOT cultured,cultured
R11285 T14512 T14511 prep at,cultured
R11286 T14513 T14514 nummod 106,cells/ml
R11287 T14514 T14512 pobj cells/ml,at
R11288 T14515 T14517 punct (,ml
R11289 T14516 T14517 nummod 10,ml
R11290 T14517 T14514 appos ml,cells/ml
R11291 T14518 T14517 punct ),ml
R11292 T14519 T14511 prep in,cultured
R11293 T14520 T14521 nummod T25,flasks
R11294 T14521 T14519 pobj flasks,in
R11295 T14522 T14511 conj coated,cultured
R11296 T14523 T14522 prep with,coated
R11297 T14524 T14525 nummod 1,μg
R11298 T14525 T14527 compound μg,ml
R11299 T14526 T14527 compound /,ml
R11300 T14527 T14523 pobj ml,with
R11301 T14528 T14527 appos each,ml
R11302 T14529 T14528 prep of,each
R11303 T14530 T14529 pobj anti-CD3,of
R11304 T14531 T14533 punct (,2C11
R11305 T14532 T14533 compound clone,2C11
R11306 T14533 T14530 appos 2C11,anti-CD3
R11307 T14534 T14533 punct ),2C11
R11308 T14535 T14530 cc and,anti-CD3
R11309 T14536 T14530 conj anti-CD28,anti-CD3
R11310 T14537 T14538 punct (,clone
R11311 T14538 T14536 appos clone,anti-CD28
R11312 T14539 T14538 nummod 37.51,clone
R11313 T14540 T14538 punct ),clone
R11314 T14541 T14538 prep by,clone
R11315 T14542 T14541 pobj pretreatment,by
R11316 T14543 T14538 prep with,clone
R11317 T14544 T14545 nummod 300,μg
R11318 T14545 T14549 nmod μg,anti
R11319 T14546 T14549 nmod /,anti
R11320 T14547 T14549 compound ml,anti
R11321 T14548 T14549 compound goat,anti
R11322 T14549 T14543 pobj anti,with
R11323 T14550 T14551 compound hamster,IgG
R11324 T14551 T14549 appos IgG,anti
R11325 T14552 T14511 punct .,cultured

GO-CC

Id Subject Object Predicate Lexical cue
T14831 239-244 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T14832 266-271 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14379 0-428 Sentence denotes All mice were maintained in specific pathogen-free barrier facilities and used according to protocols approved by the Immune Disease Institute and the Harvard Medical School Animal Care and Use Committees. For stimulation, purified CD8+ T cells were cultured at 106 cells/ml (10 ml) in T25 flasks coated with 1 μg/ml each of anti-CD3 (clone 2C11) and anti-CD28 (clone 37.51) by pretreatment with 300 μg/ml goat anti–hamster IgG.
T160 0-205 Sentence denotes All mice were maintained in specific pathogen-free barrier facilities and used according to protocols approved by the Immune Disease Institute and the Harvard Medical School Animal Care and Use Committees.
T161 206-428 Sentence denotes For stimulation, purified CD8+ T cells were cultured at 106 cells/ml (10 ml) in T25 flasks coated with 1 μg/ml each of anti-CD3 (clone 2C11) and anti-CD28 (clone 37.51) by pretreatment with 300 μg/ml goat anti–hamster IgG.

events-check-again

Id Subject Object Predicate Lexical cue
T14889 232-235 Protein denotes CD8
T14890 330-333 Protein denotes CD3
T14891 356-360 Protein denotes CD28

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14899 118-132 Protein denotes Immune Disease
T14900 232-236 Protein denotes CD8+
T14901 325-333 Protein denotes anti-CD3
T14902 335-345 Protein denotes clone 2C11
T14903 356-360 Protein denotes CD28
T14904 411-427 Protein denotes anti–hamster IgG

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T14370 232-235 Protein denotes CD8
T14371 330-333 Protein denotes CD3
T14372 356-360 Protein denotes CD28

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14814 232-235 P10966 denotes CD8
T14815 232-235 P01732 denotes CD8
T14816 330-333 P04234 denotes CD3
T14817 330-333 P20963 denotes CD3
T14818 330-333 P09693 denotes CD3
T14819 330-333 P07766 denotes CD3
T14820 356-360 P10747 denotes CD28

test2

Id Subject Object Predicate Lexical cue
T14361 232-235 Protein denotes CD8
T14362 330-333 Protein denotes CD3
T14363 356-360 Protein denotes CD28