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PMC:2626671 / 2500-2859 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1724 3-7 NN denotes cell
T1725 8-23 NN denotes differentiation
T1726 23-24 -COMMA- denotes ,
T1727 25-28 CC denotes and
T1728 29-36 IN denotes whether
T1729 37-41 PRP denotes they
T1730 42-44 VB denotes do
T1731 45-47 RB denotes so
T1732 48-56 RB denotes directly
T1733 57-59 IN denotes by
T1734 60-69 VB denotes targeting
T1735 70-78 JJ denotes specific
T1736 79-87 NN denotes effector
T1737 88-96 NN denotes cytokine
T1738 97-100 CC denotes and
T1739 101-110 JJ denotes cytolytic
T1740 111-122 NN denotes genes. Runx
T1741 123-131 NN denotes proteins
T1742 131-132 -COMMA- denotes ,
T1743 133-134 DT denotes a
T1744 135-141 NN denotes family
T1745 142-144 IN denotes of
T1746 145-150 CD denotes three
T1747 151-162 JJ denotes DNA-binding
T1748 163-176 NN denotes transcription
T1749 177-184 NN denotes factors
T1750 184-185 -COMMA- denotes ,
T1751 186-193 NN denotes control
T1752 194-203 NN denotes thymocyte
T1753 204-219 NN denotes differentiation
T1754 220-223 CC denotes and
T1755 224-227 DT denotes the
T1756 228-235 NN denotes CD4/CD8
T1757 236-243 NN denotes lineage
T1758 244-252 NN denotes decision
T1759 253-254 -LRB- denotes (
T1760 254-259 CD denotes 10–13
T1761 259-260 -RRB- denotes )
T1762 262-267 NN denotes Runx3
T1763 268-271 CC denotes and
T1764 272-280 NN denotes perforin
T1765 281-285 NN denotes mRNA
T1766 286-289 VB denotes are
T1767 290-299 VB denotes expressed
T1768 300-302 IN denotes by
T1769 303-318 JJ denotes double-positive
T1770 319-320 -LRB- denotes (
T1771 320-322 NN denotes DP
T1772 322-323 -RRB- denotes )
T1773 324-334 NN denotes thymocytes
T1774 335-338 CC denotes and
T1775 339-359 JJ denotes CD8+ single-positive
R1445 T1725 T1724 arg1Of differentiation,cell
R1457 T1727 T1726 arg1Of and,","
R1460 T1728 T1727 arg2Of whether,and
R1463 T1729 T1730 arg1Of they,do
R1465 T1730 T1728 arg2Of do,whether
R1466 T1730 T1731 arg1Of do,so
R1467 T1730 T1732 arg1Of do,directly
R1468 T1730 T1733 arg1Of do,by
R1469 T1734 T1733 arg2Of targeting,by
R1470 T1737 T1735 arg1Of cytokine,specific
R1477 T1737 T1736 arg1Of cytokine,effector
R1478 T1737 T1738 arg1Of cytokine,and
R1480 T1738 T1734 arg2Of and,targeting
R1483 T1738 T1742 arg1Of and,","
R1488 T1738 T1750 arg1Of and,","
R1491 T1741 T1738 arg2Of proteins,and
R1497 T1741 T1739 arg1Of proteins,cytolytic
R1504 T1741 T1740 arg1Of proteins,"genes. Runx"
R1505 T1744 T1742 arg2Of family,","
R1509 T1744 T1743 arg1Of family,a
R1510 T1744 T1745 arg1Of family,of
R1511 T1749 T1745 arg2Of factors,of
R1527 T1749 T1746 arg1Of factors,three
R1529 T1749 T1747 arg1Of factors,DNA-binding
R1530 T1749 T1748 arg1Of factors,transcription
R1532 T1753 T1751 arg1Of differentiation,control
R1537 T1753 T1752 arg1Of differentiation,thymocyte
R1542 T1753 T1754 arg1Of differentiation,and
R1544 T1754 T1750 arg2Of and,","
R1547 T1758 T1754 arg2Of decision,and
R1553 T1758 T1755 arg1Of decision,the
R1554 T1758 T1756 arg1Of decision,CD4/CD8
R1555 T1758 T1757 arg1Of decision,lineage
R1560 T1758 T1759 arg1Of decision,(
R1563 T1760 T1759 arg2Of 10–13,(
R1566 T1761 T1759 arg3Of ),(
R1569 T1762 T1763 arg1Of Runx3,and
R1576 T1763 T1766 arg1Of and,are
R1580 T1763 T1767 arg2Of and,expressed
R1582 T1765 T1763 arg2Of mRNA,and
R1591 T1765 T1764 arg1Of mRNA,perforin
R1593 T1767 T1766 arg2Of expressed,are
R1596 T1767 T1768 arg1Of expressed,by
R1608 T1771 T1770 arg2Of DP,(
R1609 T1772 T1770 arg3Of ),(
R1612 T1773 T1769 arg1Of thymocytes,double-positive
R1617 T1773 T1770 arg1Of thymocytes,(
R1618 T1773 T1774 arg1Of thymocytes,and
R1623 T1774 T1768 arg2Of and,by

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1995 37-41 Anaphor denotes they

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1113 1-2 NNP denotes T
T1114 3-7 NN denotes cell
T1115 8-23 NN denotes differentiation
T1116 23-24 , denotes ,
T1117 25-28 CC denotes and
T1118 29-36 IN denotes whether
T1119 37-41 PRP denotes they
T1120 42-44 VBP denotes do
T1121 45-47 RB denotes so
T1122 48-56 RB denotes directly
T1123 57-59 IN denotes by
T1124 60-69 VBG denotes targeting
T1125 70-78 JJ denotes specific
T1126 79-87 NN denotes effector
T1127 88-96 NN denotes cytokine
T1128 97-100 CC denotes and
T1129 101-110 JJ denotes cytolytic
T1130 111-122 NNP denotes genes. Runx
T1131 123-131 NNS denotes proteins
T1132 131-132 , denotes ,
T1133 133-134 DT denotes a
T1134 135-141 NN denotes family
T1135 142-144 IN denotes of
T1136 145-150 CD denotes three
T1137 151-162 JJ denotes DNA-binding
T1138 163-176 NN denotes transcription
T1139 177-184 NNS denotes factors
T1140 184-185 , denotes ,
T1141 186-193 NN denotes control
T1142 194-203 NN denotes thymocyte
T1143 204-219 NN denotes differentiation
T1144 220-223 CC denotes and
T1145 224-227 DT denotes the
T1146 228-235 NNP denotes CD4/CD8
T1147 236-243 NN denotes lineage
T1148 244-252 NN denotes decision
T1149 253-254 -LRB- denotes (
T1150 254-256 CD denotes 10
T1151 257-259 CD denotes 13
T1152 259-260 -RRB- denotes )
T1153 260-261 . denotes .
T1154 262-267 JJ denotes Runx3
T1155 268-271 CC denotes and
T1156 272-280 JJ denotes perforin
T1157 281-285 NNP denotes mRNA
T1158 286-289 VBP denotes are
T1159 290-299 VBN denotes expressed
T1160 300-302 IN denotes by
T1161 303-318 JJ denotes double-positive
T1162 319-320 -LRB- denotes (
T1163 320-322 NNP denotes DP
T1164 322-323 -RRB- denotes )
T1165 324-334 NNS denotes thymocytes
T1166 335-338 CC denotes and
T1167 339-342 CD denotes CD8
T1168 342-343 CD denotes +
T1169 344-359 JJ denotes single-positive
R879 T1113 T1114 compound T,cell
R880 T1114 T1115 compound cell,differentiation
R884 T1118 T1120 mark whether,do
R885 T1119 T1120 nsubj they,do
R887 T1121 T1122 advmod so,directly
R888 T1122 T1120 advmod directly,do
R889 T1123 T1120 prep by,do
R890 T1124 T1123 pcomp targeting,by
R891 T1125 T1127 amod specific,cytokine
R892 T1126 T1127 compound effector,cytokine
R893 T1127 T1124 dobj cytokine,targeting
R894 T1128 T1127 cc and,cytokine
R895 T1129 T1131 amod cytolytic,proteins
R896 T1130 T1131 compound "genes. Runx",proteins
R897 T1131 T1127 conj proteins,cytokine
R898 T1132 T1131 punct ",",proteins
R899 T1133 T1134 det a,family
R900 T1134 T1131 conj family,proteins
R901 T1135 T1134 prep of,family
R902 T1136 T1139 nummod three,factors
R903 T1137 T1139 amod DNA-binding,factors
R904 T1138 T1139 compound transcription,factors
R905 T1139 T1135 pobj factors,of
R906 T1140 T1139 punct ",",factors
R907 T1141 T1143 compound control,differentiation
R908 T1142 T1143 compound thymocyte,differentiation
R909 T1143 T1139 appos differentiation,factors
R910 T1144 T1143 cc and,differentiation
R911 T1145 T1148 det the,decision
R912 T1146 T1148 compound CD4/CD8,decision
R913 T1147 T1148 compound lineage,decision
R914 T1148 T1143 conj decision,differentiation
R915 T1149 T1151 punct (,13
R916 T1150 T1151 nummod 10,13
R917 T1151 T1148 appos 13,decision
R918 T1152 T1139 punct ),factors
R920 T1154 T1159 nsubjpass Runx3,expressed
R921 T1155 T1154 cc and,Runx3
R922 T1156 T1157 compound perforin,mRNA
R923 T1157 T1154 conj mRNA,Runx3
R924 T1158 T1159 auxpass are,expressed
R925 T1159 T1159 ROOT expressed,expressed
R926 T1160 T1159 agent by,expressed
R927 T1161 T1160 pobj double-positive,by
R928 T1162 T1163 punct (,DP
R929 T1163 T1161 appos DP,double-positive
R930 T1164 T1163 punct ),DP
R931 T1165 T1161 conj thymocytes,double-positive
R932 T1166 T1165 cc and,thymocytes
R933 T1167 T1169 nummod CD8,single-positive
R934 T1168 T1169 nummod +,single-positive
R935 T1169 T1165 conj single-positive,thymocytes

GO-BP

Id Subject Object Predicate Lexical cue
T825 194-219 http://purl.obolibrary.org/obo/GO_0033077 denotes thymocyte differentiation
T862 1-23 http://purl.obolibrary.org/obo/GO_0043379 denotes T cell differentiation
T865 3-23 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation
T874 163-176 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T844 1-23 http://purl.obolibrary.org/obo/GO_0002572 denotes T cell differentiation
T847 1-23 http://purl.obolibrary.org/obo/GO_0045580 denotes T cell differentiation
T850 1-23 http://purl.obolibrary.org/obo/GO_0001865 denotes T cell differentiation
T853 1-23 http://purl.obolibrary.org/obo/GO_0030217 denotes T cell differentiation
T856 1-23 http://purl.obolibrary.org/obo/GO_0042093 denotes T cell differentiation
T859 1-23 http://purl.obolibrary.org/obo/GO_0045066 denotes T cell differentiation

GO-MF

Id Subject Object Predicate Lexical cue
T2073 151-162 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding
T2074 155-162 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T2075 155-184 http://purl.obolibrary.org/obo/GO_0008134 denotes binding transcription factors
T2076 155-184 http://purl.obolibrary.org/obo/GO_0033613 denotes binding transcription factors
T2077 155-184 http://purl.obolibrary.org/obo/GO_0043425 denotes binding transcription factors
T2078 155-184 http://purl.obolibrary.org/obo/GO_0070491 denotes binding transcription factors

sentences

Id Subject Object Predicate Lexical cue
T16 118-261 Sentence denotes Runx proteins, a family of three DNA-binding transcription factors, control thymocyte differentiation and the CD4/CD8 lineage decision (10–13).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2581 60-69 Binding denotes targeting
T2582 60-69 Binding denotes targeting
T2583 228-231 Protein denotes CD4
T2584 232-235 Protein denotes CD8
T2585 262-267 Protein denotes Runx3
T2586 272-280 Protein denotes perforin
T2587 290-299 Transcription denotes expressed true
T2588 290-299 Transcription denotes expressed true
T2589 339-342 Protein denotes CD8
R2018 T2585 T2588 themeOf Runx3,expressed
R2019 T2586 T2587 themeOf perforin,expressed

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1442 60-69 Binding denotes targeting
T1443 60-69 Binding denotes targeting
T1444 290-299 Transcription denotes expressed true
T1454 228-231 Protein denotes CD4
T1456 232-235 Protein denotes CD8
T1457 262-267 Protein denotes Runx3
T1458 272-280 Protein denotes perforin
T1459 339-342 Protein denotes CD8
T1404 290-299 Transcription denotes expressed true
R1188 T1457 T1444 themeOf Runx3,expressed
R1189 T1458 T1404 themeOf perforin,expressed

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2017 118-122 Q01196 denotes Runx
T2018 118-122 Q13761 denotes Runx
T2019 118-122 Q13950 denotes Runx
T2020 228-231 P01730 denotes CD4
T2021 232-235 P10966 denotes CD8
T2022 232-235 P01732 denotes CD8
T2023 262-267 Q13761 denotes Runx3
T2024 272-280 P14222 denotes perforin
T2025 339-342 P10966 denotes CD8
T2026 339-342 P01732 denotes CD8

test2

Id Subject Object Predicate Lexical cue Negation
T765 228-231 Protein denotes CD4
T766 232-235 Protein denotes CD8
T767 262-267 Protein denotes Runx3
T768 272-280 Protein denotes perforin
T769 290-299 Gene_expression denotes expressed
T770 339-342 Protein denotes CD8 true
R602 T767 T769 themeOf Runx3,expressed
R603 T768 T769 themeOf perforin,expressed