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PMC:2626671 / 22272-22373 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12033 0-12 RB denotes Surprisingly
T12034 12-13 , denotes ,
T12035 14-19 JJ denotes Runx3
T12036 20-31 VBD denotes contributed
T12037 32-34 TO denotes to
T12038 35-38 DT denotes the
T12039 39-46 JJ denotes optimal
T12040 47-57 NN denotes expression
T12041 58-60 IN denotes of
T12042 61-64 NNP denotes TNF
T12043 64-65 , denotes ,
T12044 66-70 NNP denotes IL-2
T12045 70-71 , denotes ,
T12046 72-75 CC denotes and
T12047 76-81 NNP denotes IFN-γ
T12048 82-84 IN denotes at
T12049 85-88 NN denotes day
T12050 89-90 CD denotes 4
T12051 91-92 -LRB- denotes (
T12052 92-95 NN denotes Fig
T12053 95-96 . denotes .
T12054 97-99 CD denotes S2
T12055 99-100 -RRB- denotes )
T12056 100-101 . denotes .
R9427 T12033 T12036 advmod Surprisingly,contributed
R9428 T12034 T12036 punct ",",contributed
R9429 T12035 T12036 nsubj Runx3,contributed
R9430 T12036 T12036 ROOT contributed,contributed
R9431 T12037 T12036 prep to,contributed
R9432 T12038 T12040 det the,expression
R9433 T12039 T12040 amod optimal,expression
R9434 T12040 T12037 pobj expression,to
R9435 T12041 T12040 prep of,expression
R9436 T12042 T12041 pobj TNF,of
R9437 T12043 T12042 punct ",",TNF
R9438 T12044 T12042 conj IL-2,TNF
R9439 T12045 T12044 punct ",",IL-2
R9440 T12046 T12044 cc and,IL-2
R9441 T12047 T12044 conj IFN-γ,IL-2
R9442 T12048 T12040 prep at,expression
R9443 T12049 T12052 nmod day,Fig
R9444 T12050 T12049 nummod 4,day
R9445 T12051 T12052 punct (,Fig
R9446 T12052 T12048 pobj Fig,at
R9447 T12053 T12036 punct .,contributed
R9448 T12054 T12054 ROOT S2,S2
R9449 T12055 T12054 punct ),S2
R9450 T12056 T12054 punct .,S2

GO-MF

Id Subject Object Predicate Lexical cue
T12726 66-70 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

sentences

Id Subject Object Predicate Lexical cue
T11895 0-101 Sentence denotes Surprisingly, Runx3 contributed to the optimal expression of TNF, IL-2, and IFN-γ at day 4 (Fig. S2).
T132 0-101 Sentence denotes Surprisingly, Runx3 contributed to the optimal expression of TNF, IL-2, and IFN-γ at day 4 (Fig. S2).

events-check-again

Id Subject Object Predicate Lexical cue
T13541 14-19 Protein denotes Runx3
T13542 20-31 Positive_regulation denotes contributed
T13543 20-31 Positive_regulation denotes contributed
T13544 20-31 Positive_regulation denotes contributed
T13545 47-57 Gene_expression denotes expression
T13546 47-57 Gene_expression denotes expression
T13547 47-57 Gene_expression denotes expression
T13548 61-64 Protein denotes TNF
T13549 66-70 Protein denotes IL-2
T13550 76-81 Protein denotes IFN-γ
R10638 T13541 T13543 causeOf Runx3,contributed
R10639 T13545 T13543 themeOf expression,contributed
R10644 T13550 T13545 themeOf IFN-γ,expression
R10636 T13541 T13542 causeOf Runx3,contributed
R10637 T13541 T13544 causeOf Runx3,contributed
R10640 T13546 T13544 themeOf expression,contributed
R10641 T13547 T13542 themeOf expression,contributed
R10642 T13548 T13547 themeOf TNF,expression
R10643 T13549 T13546 themeOf IL-2,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13693 14-19 Protein denotes Runx3
T13694 61-64 Protein denotes TNF
T13695 66-70 Protein denotes IL-2
T13696 76-81 Protein denotes IFN-γ
T13697 47-57 Gene_expression denotes expression
T13698 47-57 Gene_expression denotes expression
T13699 47-57 Gene_expression denotes expression
T13700 20-31 Positive_regulation denotes contributed
T13701 20-31 Positive_regulation denotes contributed
T13702 20-31 Positive_regulation denotes contributed
R10745 T13693 T13700 causeOf Runx3,contributed
R10746 T13693 T13701 causeOf Runx3,contributed
R10747 T13693 T13702 causeOf Runx3,contributed
R10748 T13694 T13697 themeOf TNF,expression
R10749 T13695 T13698 themeOf IL-2,expression
R10750 T13696 T13699 themeOf IFN-γ,expression
R10751 T13697 T13700 themeOf expression,contributed
R10752 T13698 T13701 themeOf expression,contributed
R10753 T13699 T13702 themeOf expression,contributed

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11757 14-19 Protein denotes Runx3
T11758 20-31 Positive_regulation denotes contributed
T11759 20-31 Positive_regulation denotes contributed
T11760 20-31 Positive_regulation denotes contributed
T11761 47-57 Gene_expression denotes expression
T11762 47-57 Gene_expression denotes expression
T11763 47-57 Gene_expression denotes expression
T11764 61-64 Protein denotes TNF
T11765 66-70 Protein denotes IL-2
T11766 76-81 Protein denotes IFN-γ
R9205 T11757 T11758 causeOf Runx3,contributed
R9206 T11757 T11760 causeOf Runx3,contributed
R9207 T11757 T11759 causeOf Runx3,contributed
R9208 T11761 T11759 themeOf expression,contributed
R9209 T11762 T11760 themeOf expression,contributed
R9210 T11763 T11758 themeOf expression,contributed
R9211 T11764 T11763 themeOf TNF,expression
R9212 T11765 T11762 themeOf IL-2,expression
R9213 T11766 T11761 themeOf IFN-γ,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12622 14-19 Q13761 denotes Runx3
T12623 61-64 P01375 denotes TNF
T12624 66-70 P60568 denotes IL-2
T12625 76-81 P01579 denotes IFN-γ

test2

Id Subject Object Predicate Lexical cue Speculation
T11614 14-19 Protein denotes Runx3
T11615 20-31 Positive_regulation denotes contributed true
T11616 47-57 Gene_expression denotes expression
T11617 61-64 Protein denotes TNF true
T11618 66-70 Protein denotes IL-2 true
T11619 76-81 Protein denotes IFN-γ
R9094 T11614 T11615 causeOf Runx3,contributed
R9095 T11616 T11615 themeOf expression,contributed
R9096 T11617 T11616 themeOf TNF,expression
R9097 T11618 T11616 themeOf IL-2,expression
R9098 T11619 T11616 themeOf IFN-γ,expression