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PMC:2626671 / 20483-20604 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21501 0-5 NN denotes Runx3
T21502 6-8 VB denotes is
T21503 9-16 JJ denotes present
T21504 17-19 IN denotes in
T21505 20-25 JJ denotes naive
T21506 26-30 JJ denotes CD8+
T21507 31-32 NN denotes T
T21508 33-38 NN denotes cells
T21509 39-42 CC denotes and
T21510 43-52 VB denotes represses
T21511 53-58 NN denotes Runx1
T21512 59-62 CC denotes and
T21513 63-70 VB denotes induces
T21514 71-76 NN denotes Eomes
T21515 76-77 -COMMA- denotes ,
T21516 78-86 NN denotes perforin
T21517 86-87 -COMMA- denotes ,
T21518 88-96 NN denotes granzyme
T21519 97-98 NN denotes B
T21520 98-99 -COMMA- denotes ,
T21521 100-103 CC denotes and
T21522 104-109 NN denotes IFN-γ
T21523 110-120 NN denotes expression
R16562 T21501 T21502 arg1Of Runx3,is
R16563 T21501 T21503 arg1Of Runx3,present
R16564 T21501 T21510 arg1Of Runx3,represses
R16565 T21501 T21513 arg1Of Runx3,induces
R16566 T21502 T21509 arg1Of is,and
R16567 T21503 T21502 arg2Of present,is
R16568 T21503 T21504 arg1Of present,in
R16569 T21508 T21504 arg2Of cells,in
R16570 T21508 T21505 arg1Of cells,naive
R16571 T21508 T21506 arg1Of cells,CD8+
R16572 T21508 T21507 arg1Of cells,T
R16573 T21510 T21512 arg1Of represses,and
R16574 T21511 T21510 arg2Of Runx1,represses
R16575 T21512 T21509 arg2Of and,and
R16576 T21513 T21512 arg2Of induces,and
R16577 T21514 T21513 arg2Of Eomes,induces
R16578 T21514 T21515 arg1Of Eomes,","
R16579 T21516 T21517 arg1Of perforin,","
R16580 T21517 T21521 arg1Of ",",and
R16581 T21519 T21517 arg2Of B,","
R16582 T21519 T21518 arg1Of B,granzyme
R16583 T21521 T21515 arg2Of and,","
R16584 T21521 T21520 arg1Of and,","
R16585 T21523 T21521 arg2Of expression,and
R16586 T21523 T21522 arg1Of expression,IFN-γ

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21210 0-5 NN denotes Runx3
T21211 6-8 VBZ denotes is
T21212 9-16 JJ denotes present
T21213 17-19 IN denotes in
T21214 20-25 JJ denotes naive
T21215 26-29 NNP denotes CD8
T21216 29-30 CD denotes +
T21217 31-32 NNP denotes T
T21218 33-38 NNS denotes cells
T21219 39-42 CC denotes and
T21220 43-52 VBZ denotes represses
T21221 53-58 NNP denotes Runx1
T21222 59-62 CC denotes and
T21223 63-70 VBZ denotes induces
T21224 71-76 NNP denotes Eomes
T21225 76-77 , denotes ,
T21226 78-86 NN denotes perforin
T21227 86-87 , denotes ,
T21228 88-96 NN denotes granzyme
T21229 97-98 NNP denotes B
T21230 98-99 , denotes ,
T21231 100-103 CC denotes and
T21232 104-109 NNP denotes IFN-γ
T21233 110-120 NN denotes expression
T21234 120-121 . denotes .
R16261 T21210 T21211 nsubj Runx3,is
R16262 T21211 T21211 ROOT is,is
R16263 T21212 T21211 acomp present,is
R16264 T21213 T21212 prep in,present
R16265 T21214 T21218 amod naive,cells
R16266 T21215 T21218 nmod CD8,cells
R16267 T21216 T21218 nummod +,cells
R16268 T21217 T21218 compound T,cells
R16269 T21218 T21213 pobj cells,in
R16270 T21219 T21211 cc and,is
R16271 T21220 T21211 conj represses,is
R16272 T21221 T21220 dobj Runx1,represses
R16273 T21222 T21220 cc and,represses
R16274 T21223 T21220 conj induces,represses
R16275 T21224 T21223 dobj Eomes,induces
R16276 T21225 T21224 punct ",",Eomes
R16277 T21226 T21224 appos perforin,Eomes
R16278 T21227 T21224 punct ",",Eomes
R16279 T21228 T21229 compound granzyme,B
R16280 T21229 T21224 conj B,Eomes
R16281 T21230 T21220 punct ",",represses
R16282 T21231 T21220 cc and,represses
R16283 T21232 T21233 compound IFN-γ,expression
R16284 T21233 T21220 conj expression,represses
R16285 T21234 T21211 punct .,is

GO-CC

Id Subject Object Predicate Lexical cue
T21627 33-38 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20960 0-121 Sentence denotes Runx3 is present in naive CD8+ T cells and represses Runx1 and induces Eomes, perforin, granzyme B, and IFN-γ expression.
T120 0-121 Sentence denotes Runx3 is present in naive CD8+ T cells and represses Runx1 and induces Eomes, perforin, granzyme B, and IFN-γ expression.

events-check-again

Id Subject Object Predicate Lexical cue
T22011 0-5 Protein denotes Runx3
T22012 9-16 Gene_expression denotes present
T22013 26-29 Protein denotes CD8
T22014 43-52 Negative_regulation denotes represses
T22015 53-58 Protein denotes Runx1
T22016 63-70 Positive_regulation denotes induces
T22017 63-70 Positive_regulation denotes induces
T22018 63-70 Positive_regulation denotes induces
T22019 63-70 Positive_regulation denotes induces
T22020 71-76 Protein denotes Eomes
T22021 78-86 Protein denotes perforin
T22022 88-98 Protein denotes granzyme B
T22023 104-109 Protein denotes IFN-γ
T22024 110-120 Gene_expression denotes expression
T22025 110-120 Gene_expression denotes expression
T22026 110-120 Gene_expression denotes expression
T22027 110-120 Gene_expression denotes expression
R16870 T22011 T22012 themeOf Runx3,present
R16871 T22011 T22014 causeOf Runx3,represses
R16872 T22011 T22019 causeOf Runx3,induces
R16873 T22011 T22017 causeOf Runx3,induces
R16874 T22011 T22018 causeOf Runx3,induces
R16875 T22011 T22016 causeOf Runx3,induces
R16876 T22015 T22014 themeOf Runx1,represses
R16877 T22020 T22026 themeOf Eomes,expression
R16878 T22021 T22027 themeOf perforin,expression
R16879 T22022 T22024 themeOf granzyme B,expression
R16880 T22023 T22025 themeOf IFN-γ,expression
R16881 T22024 T22018 themeOf expression,induces
R16882 T22025 T22016 themeOf expression,induces
R16883 T22026 T22019 themeOf expression,induces
R16884 T22027 T22017 themeOf expression,induces

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T22089 0-5 Protein denotes Runx3
T22090 26-30 Protein denotes CD8+
T22091 53-58 Protein denotes Runx1
T22092 71-76 Protein denotes Eomes
T22093 78-86 Protein denotes perforin
T22094 88-98 Protein denotes granzyme B
T22095 104-109 Protein denotes IFN-γ
T22096 9-16 Gene_expression denotes present
T22097 43-52 Negative_regulation denotes represses
T22098 110-120 Gene_expression denotes expression
T22099 110-120 Gene_expression denotes expression
R16922 T22089 T22096 themeOf Runx3,present
R16923 T22089 T22097 causeOf Runx3,represses
R16924 T22091 T22097 themeOf Runx1,represses
R16925 T22092 T22098 themeOf Eomes,expression
R16926 T22095 T22099 themeOf IFN-γ,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T20929 110-120 Gene_expression denotes expression
T20930 110-120 Gene_expression denotes expression
T20931 110-120 Gene_expression denotes expression
T20915 0-5 Protein denotes Runx3
T20916 9-16 Gene_expression denotes present
T20917 26-29 Protein denotes CD8
T20918 43-52 Negative_regulation denotes represses
T20919 53-58 Protein denotes Runx1
T20920 63-70 Positive_regulation denotes induces
T20921 63-70 Positive_regulation denotes induces
T20922 63-70 Positive_regulation denotes induces
T20923 63-70 Positive_regulation denotes induces
T20924 71-76 Protein denotes Eomes
T20925 78-86 Protein denotes perforin
T20926 88-98 Protein denotes granzyme B
T20927 104-109 Protein denotes IFN-γ
T20928 110-120 Gene_expression denotes expression
R15999 T20930 T20923 themeOf expression,induces
R15986 T20915 T20916 themeOf Runx3,present
R15987 T20915 T20918 causeOf Runx3,represses
R15988 T20915 T20923 causeOf Runx3,induces
R15992 T20919 T20918 themeOf Runx1,represses
R15993 T20924 T20930 themeOf Eomes,expression
R15989 T20915 T20921 causeOf Runx3,induces
R15990 T20915 T20922 causeOf Runx3,induces
R15991 T20915 T20920 causeOf Runx3,induces
R15994 T20925 T20931 themeOf perforin,expression
R15995 T20926 T20928 themeOf granzyme B,expression
R15996 T20927 T20929 themeOf IFN-γ,expression
R15997 T20928 T20922 themeOf expression,induces
R15998 T20929 T20920 themeOf expression,induces
R16000 T20931 T20921 themeOf expression,induces

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21593 0-5 Q13761 denotes Runx3
T21594 26-29 P01732 denotes CD8
T21595 26-29 P10966 denotes CD8
T21596 53-58 Q01196 denotes Runx1
T21597 71-76 O95936 denotes Eomes
T21598 78-86 P14222 denotes perforin
T21599 88-98 P10144 denotes granzyme B
T21600 104-109 P01579 denotes IFN-γ

test2

Id Subject Object Predicate Lexical cue Negation
T20851 0-5 Protein denotes Runx3
T20852 26-29 Protein denotes CD8
T20853 43-52 Negative_regulation denotes represses
T20854 53-58 Protein denotes Runx1
T20855 63-70 Positive_regulation denotes induces true
T20856 71-76 Protein denotes Eomes
T20857 78-86 Protein denotes perforin
T20858 88-98 Protein denotes granzyme B
T20859 104-109 Protein denotes IFN-γ
T20860 110-120 Gene_expression denotes expression
R15947 T20854 T20855 causeOf Runx1,induces
R15948 T20856 T20860 themeOf Eomes,expression
R15949 T20857 T20860 themeOf perforin,expression
R15950 T20858 T20860 themeOf granzyme B,expression
R15951 T20859 T20860 themeOf IFN-γ,expression
R15952 T20860 T20855 themeOf expression,induces