PMC:2626671 / 19289-19471
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21295 | 0-8 | NN | denotes | Runx3+/+ |
| T21296 | 9-11 | CC | denotes | or |
| T21297 | 12-20 | NN | denotes | Runx3−/− |
| T21298 | 21-25 | JJ | denotes | CD8+ |
| T21299 | 26-27 | NN | denotes | T |
| T21300 | 28-33 | NN | denotes | cells |
| T21301 | 34-38 | VB | denotes | were |
| T21302 | 39-48 | VB | denotes | activated |
| T21303 | 49-52 | CC | denotes | and |
| T21304 | 53-63 | VB | denotes | transduced |
| T21305 | 64-68 | IN | denotes | with |
| T21306 | 69-81 | NN | denotes | retroviruses |
| T21307 | 82-89 | VB | denotes | bearing |
| T21308 | 90-92 | DT | denotes | an |
| T21309 | 93-98 | JJ | denotes | empty |
| T21310 | 99-107 | NN | denotes | IRES-GFP |
| T21311 | 108-116 | NN | denotes | cassette |
| T21312 | 117-118 | -LRB- | denotes | ( |
| T21313 | 118-121 | NN | denotes | GFP |
| T21314 | 121-122 | -RRB- | denotes | ) |
| T21315 | 123-125 | CC | denotes | or |
| T21316 | 126-130 | RB | denotes | also |
| T21317 | 131-139 | VB | denotes | encoding |
| T21318 | 140-150 | NN | denotes | Eomes-VP16 |
| T21319 | 151-152 | -LRB- | denotes | ( |
| T21320 | 152-159 | NN | denotes | Eo-VP16 |
| T21321 | 159-160 | -RRB- | denotes | ) |
| T21322 | 161-163 | CC | denotes | or |
| T21323 | 164-173 | NN | denotes | Myc-Runx3 |
| T21324 | 174-175 | -LRB- | denotes | ( |
| T21325 | 175-180 | NN | denotes | Runx3 |
| T21326 | 180-181 | -RRB- | denotes | ) |
| R16345 | T21295 | T21296 | arg1Of | Runx3+/+,or |
| R16346 | T21297 | T21296 | arg2Of | Runx3−/−,or |
| R16347 | T21300 | T21295 | arg1Of | cells,Runx3+/+ |
| R16348 | T21300 | T21297 | arg1Of | cells,Runx3−/− |
| R16349 | T21300 | T21298 | arg1Of | cells,CD8+ |
| R16350 | T21300 | T21299 | arg1Of | cells,T |
| R16351 | T21300 | T21301 | arg1Of | cells,were |
| R16352 | T21300 | T21302 | arg2Of | cells,activated |
| R16353 | T21300 | T21304 | arg2Of | cells,transduced |
| R16354 | T21302 | T21303 | arg1Of | activated,and |
| R16355 | T21303 | T21301 | arg2Of | and,were |
| R16356 | T21304 | T21303 | arg2Of | transduced,and |
| R16357 | T21304 | T21305 | arg1Of | transduced,with |
| R16358 | T21306 | T21305 | arg2Of | retroviruses,with |
| R16359 | T21306 | T21307 | arg1Of | retroviruses,bearing |
| R16360 | T21306 | T21317 | arg1Of | retroviruses,encoding |
| R16361 | T21307 | T21315 | arg1Of | bearing,or |
| R16362 | T21311 | T21307 | arg2Of | cassette,bearing |
| R16363 | T21311 | T21308 | arg1Of | cassette,an |
| R16364 | T21311 | T21309 | arg1Of | cassette,empty |
| R16365 | T21311 | T21310 | arg1Of | cassette,IRES-GFP |
| R16366 | T21311 | T21312 | arg1Of | cassette,( |
| R16367 | T21313 | T21312 | arg2Of | GFP,( |
| R16368 | T21314 | T21312 | arg3Of | ),( |
| R16369 | T21317 | T21315 | arg2Of | encoding,or |
| R16370 | T21317 | T21316 | arg1Of | encoding,also |
| R16371 | T21318 | T21319 | arg1Of | Eomes-VP16,( |
| R16372 | T21318 | T21322 | arg1Of | Eomes-VP16,or |
| R16373 | T21320 | T21319 | arg2Of | Eo-VP16,( |
| R16374 | T21321 | T21319 | arg3Of | ),( |
| R16375 | T21322 | T21317 | arg2Of | or,encoding |
| R16376 | T21323 | T21322 | arg2Of | Myc-Runx3,or |
| R16377 | T21323 | T21324 | arg1Of | Myc-Runx3,( |
| R16378 | T21325 | T21324 | arg2Of | Runx3,( |
| R16379 | T21326 | T21324 | arg3Of | ),( |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20983 | 0-5 | JJ | denotes | Runx3 |
| T20984 | 5-6 | NN | denotes | + |
| T20985 | 6-7 | NN | denotes | / |
| T20986 | 7-8 | NN | denotes | + |
| T20987 | 9-11 | CC | denotes | or |
| T20988 | 12-17 | JJ | denotes | Runx3 |
| T20989 | 17-18 | FW | denotes | − |
| T20990 | 18-19 | FW | denotes | / |
| T20991 | 19-20 | FW | denotes | − |
| T20992 | 21-24 | FW | denotes | CD8 |
| T20993 | 24-25 | FW | denotes | + |
| T20994 | 26-27 | FW | denotes | T |
| T20995 | 28-33 | NNS | denotes | cells |
| T20996 | 34-38 | VBD | denotes | were |
| T20997 | 39-48 | VBN | denotes | activated |
| T20998 | 49-52 | CC | denotes | and |
| T20999 | 53-63 | VBN | denotes | transduced |
| T21000 | 64-68 | IN | denotes | with |
| T21001 | 69-81 | NNS | denotes | retroviruses |
| T21002 | 82-89 | VBG | denotes | bearing |
| T21003 | 90-92 | DT | denotes | an |
| T21004 | 93-98 | JJ | denotes | empty |
| T21005 | 99-107 | NNP | denotes | IRES-GFP |
| T21006 | 108-116 | NN | denotes | cassette |
| T21007 | 117-118 | -LRB- | denotes | ( |
| T21008 | 118-121 | NNP | denotes | GFP |
| T21009 | 121-122 | -RRB- | denotes | ) |
| T21010 | 123-125 | CC | denotes | or |
| T21011 | 126-130 | RB | denotes | also |
| T21012 | 131-139 | VBG | denotes | encoding |
| T21013 | 140-150 | NNP | denotes | Eomes-VP16 |
| T21014 | 151-152 | -LRB- | denotes | ( |
| T21015 | 152-159 | NNP | denotes | Eo-VP16 |
| T21016 | 159-160 | -RRB- | denotes | ) |
| T21017 | 161-163 | CC | denotes | or |
| T21018 | 164-173 | JJ | denotes | Myc-Runx3 |
| T21019 | 174-175 | -LRB- | denotes | ( |
| T21020 | 175-180 | JJ | denotes | Runx3 |
| T21021 | 180-181 | -RRB- | denotes | ) |
| T21022 | 181-182 | . | denotes | . |
| R16034 | T20983 | T20986 | amod | Runx3,+ |
| R16035 | T20984 | T20986 | compound | +,+ |
| R16036 | T20985 | T20986 | compound | /,+ |
| R16037 | T20986 | T20997 | nsubjpass | +,activated |
| R16038 | T20987 | T20986 | cc | or,+ |
| R16039 | T20988 | T20995 | amod | Runx3,cells |
| R16040 | T20989 | T20995 | nmod | −,cells |
| R16041 | T20990 | T20995 | nmod | /,cells |
| R16042 | T20991 | T20995 | nmod | −,cells |
| R16043 | T20992 | T20995 | nmod | CD8,cells |
| R16044 | T20993 | T20995 | nmod | +,cells |
| R16045 | T20994 | T20995 | compound | T,cells |
| R16046 | T20995 | T20986 | conj | cells,+ |
| R16047 | T20996 | T20997 | auxpass | were,activated |
| R16048 | T20997 | T20997 | ROOT | activated,activated |
| R16049 | T20998 | T20997 | cc | and,activated |
| R16050 | T20999 | T20997 | conj | transduced,activated |
| R16051 | T21000 | T20999 | prep | with,transduced |
| R16052 | T21001 | T21000 | pobj | retroviruses,with |
| R16053 | T21002 | T21001 | acl | bearing,retroviruses |
| R16054 | T21003 | T21006 | det | an,cassette |
| R16055 | T21004 | T21006 | amod | empty,cassette |
| R16056 | T21005 | T21006 | compound | IRES-GFP,cassette |
| R16057 | T21006 | T21002 | dobj | cassette,bearing |
| R16058 | T21007 | T21006 | punct | (,cassette |
| R16059 | T21008 | T21006 | appos | GFP,cassette |
| R16060 | T21009 | T21008 | punct | ),GFP |
| R16061 | T21010 | T21006 | cc | or,cassette |
| R16062 | T21011 | T21012 | advmod | also,encoding |
| R16063 | T21012 | T20997 | advcl | encoding,activated |
| R16064 | T21013 | T21012 | dobj | Eomes-VP16,encoding |
| R16065 | T21014 | T21015 | punct | (,Eo-VP16 |
| R16066 | T21015 | T21013 | appos | Eo-VP16,Eomes-VP16 |
| R16067 | T21016 | T21015 | punct | ),Eo-VP16 |
| R16068 | T21017 | T21013 | cc | or,Eomes-VP16 |
| R16069 | T21018 | T21013 | conj | Myc-Runx3,Eomes-VP16 |
| R16070 | T21019 | T21020 | punct | (,Runx3 |
| R16071 | T21020 | T21018 | appos | Runx3,Myc-Runx3 |
| R16072 | T21021 | T21020 | punct | ),Runx3 |
| R16073 | T21022 | T20997 | punct | .,activated |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21622 | 28-33 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20953 | 0-182 | Sentence | denotes | Runx3+/+ or Runx3−/− CD8+ T cells were activated and transduced with retroviruses bearing an empty IRES-GFP cassette (GFP) or also encoding Eomes-VP16 (Eo-VP16) or Myc-Runx3 (Runx3). |
| T113 | 0-182 | Sentence | denotes | Runx3+/+ or Runx3−/− CD8+ T cells were activated and transduced with retroviruses bearing an empty IRES-GFP cassette (GFP) or also encoding Eomes-VP16 (Eo-VP16) or Myc-Runx3 (Runx3). |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21985 | 0-5 | Protein | denotes | Runx3 |
| T21986 | 12-17 | Protein | denotes | Runx3 |
| T21987 | 21-24 | Protein | denotes | CD8 |
| T21988 | 104-107 | Protein | denotes | GFP |
| T21989 | 140-150 | Protein | denotes | Eomes-VP16 |
| T21990 | 152-159 | Protein | denotes | Eo-VP16 |
| T21991 | 164-167 | Protein | denotes | Myc |
| T21992 | 168-173 | Protein | denotes | Runx3 |
| T21993 | 175-180 | Protein | denotes | Runx3 |
| R16861 | T21990 | T21989 | equivalentTo | Eo-VP16,Eomes-VP16 |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T22060 | 0-5 | Protein | denotes | Runx3 |
| T22061 | 12-17 | Protein | denotes | Runx3 |
| T22062 | 21-24 | Protein | denotes | CD8 |
| T22063 | 99-116 | Protein | denotes | IRES-GFP cassette |
| T22064 | 118-121 | Protein | denotes | GFP |
| T22065 | 140-150 | Protein | denotes | Eomes-VP16 |
| T22066 | 152-154 | Protein | denotes | Eo |
| T22067 | 155-159 | Protein | denotes | VP16 |
| T22068 | 164-167 | Protein | denotes | Myc |
| T22069 | 168-173 | Protein | denotes | Runx3 |
| T22070 | 175-180 | Protein | denotes | Runx3 |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T20893 | 140-150 | Protein | denotes | Eomes-VP16 |
| T20894 | 152-159 | Protein | denotes | Eo-VP16 |
| T20895 | 164-167 | Protein | denotes | Myc |
| T20896 | 168-173 | Protein | denotes | Runx3 |
| T20897 | 175-180 | Protein | denotes | Runx3 |
| T20889 | 0-5 | Protein | denotes | Runx3 |
| T20890 | 12-17 | Protein | denotes | Runx3 |
| T20891 | 21-24 | Protein | denotes | CD8 |
| T20892 | 104-107 | Protein | denotes | GFP |
| R15977 | T20894 | T20893 | equivalentTo | Eo-VP16,Eomes-VP16 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T21572 | 0-5 | Q13761 | denotes | Runx3 |
| T21573 | 12-17 | Q13761 | denotes | Runx3 |
| T21574 | 21-24 | P01732 | denotes | CD8 |
| T21575 | 21-24 | P10966 | denotes | CD8 |
| T21576 | 104-107 | Q9U6Y4 | denotes | GFP |
| T21577 | 118-121 | Q9U6Y4 | denotes | GFP |
| T21578 | 140-145 | O95936 | denotes | Eomes |
| T21579 | 152-159 | O95936 | denotes | Eo-VP16 |
| T21580 | 164-167 | P01106 | denotes | Myc |
| T21581 | 168-173 | Q13761 | denotes | Runx3 |
| T21582 | 175-180 | Q13761 | denotes | Runx3 |
test2
| Id | Subject | Object | Predicate | Lexical cue | Speculation |
|---|---|---|---|---|---|
| T20827 | 0-5 | Protein | denotes | Runx3 | |
| T20828 | 12-17 | Protein | denotes | Runx3 | |
| T20829 | 21-24 | Protein | denotes | CD8 | true |
| T20830 | 104-107 | Protein | denotes | GFP | true |
| T20831 | 140-150 | Protein | denotes | Eomes-VP16 | true |
| T20832 | 152-159 | Protein | denotes | Eo-VP16 | |
| T20833 | 164-167 | Protein | denotes | Myc | |
| T20834 | 168-173 | Protein | denotes | Runx3 | |
| T20835 | 175-180 | Protein | denotes | Runx3 | |
| R15939 | T20832 | T20831 | equivalentTo | Eo-VP16,Eomes-VP16 |