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PMC:2626671 / 17800-18118 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
19139168-16273099-59674057 187-188 16273099 denotes 8
19139168-11786644-59674058 314-316 11786644 denotes 17

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9496 0-5 NN denotes Eomes
T9497 6-11 VB denotes bound
T9498 12-21 RB denotes primarily
T9499 22-24 TO denotes to
T9500 25-28 DT denotes the
T9501 29-33 NN denotes Prf1
T9502 34-37 NN denotes TSS
T9503 38-41 CC denotes and
T9504 42-45 DT denotes the
T9505 46-48 NN denotes −1
T9506 49-51 NN denotes kb
T9507 52-60 NN denotes enhancer
T9508 60-61 -COLON- denotes ;
T9509 62-66 DT denotes this
T9510 67-74 NN denotes binding
T9511 75-78 VB denotes was
T9512 79-92 RB denotes substantially
T9513 93-100 JJ denotes greater
T9514 101-105 IN denotes than
T9515 106-110 DT denotes that
T9516 111-119 VB denotes observed
T9517 120-122 IN denotes at
T9518 123-126 DT denotes the
T9519 127-135 NN denotes promoter
T9520 136-138 IN denotes of
T9521 139-142 DT denotes the
T9522 143-148 NN denotes Il2rb
T9523 149-153 NN denotes gene
T9524 153-154 -COMMA- denotes ,
T9525 155-156 DT denotes a
T9526 157-162 JJ denotes known
T9527 163-169 JJ denotes direct
T9528 170-176 NN denotes target
T9529 177-179 IN denotes of
T9530 180-185 NN denotes Eomes
T9531 186-187 -LRB- denotes (
T9532 187-188 CD denotes 8
T9533 188-189 -RRB- denotes )
T9534 189-190 -COMMA- denotes ,
T9535 191-194 CC denotes and
T9536 195-205 JJ denotes comparable
T9537 206-208 TO denotes to
T9538 209-213 DT denotes that
T9539 214-222 VB denotes observed
T9540 223-225 IN denotes at
T9541 226-229 DT denotes the
T9542 230-234 NNP denotes Ifng
T9543 235-238 NN denotes TSS
T9544 238-239 -COMMA- denotes ,
T9545 240-241 DT denotes a
T9546 242-247 VB denotes known
T9547 248-254 NN denotes target
T9548 255-257 IN denotes of
T9549 258-263 NN denotes T-box
T9550 264-272 NN denotes proteins
T9551 273-275 IN denotes in
T9552 276-280 CC denotes both
T9553 281-284 NN denotes Th1
T9554 285-288 CC denotes and
T9555 289-293 JJ denotes CD8+
T9556 294-295 NN denotes T
T9557 296-301 NN denotes cells
T9558 302-303 -LRB- denotes (
T9559 303-307 NN denotes Fig.
T9560 308-309 CD denotes 3
T9561 310-311 NN denotes D
T9562 311-312 -RRB- denotes )
T9563 313-314 -LRB- denotes (
T9564 314-316 CD denotes 17
T9565 316-317 -RRB- denotes )
R7656 T9496 T9497 arg1Of Eomes,bound
R7658 T9497 T9499 arg1Of bound,to
R7659 T9497 T9508 arg1Of bound,;
R7660 T9499 T9498 arg1Of to,primarily
R7662 T9502 T9500 arg1Of TSS,the
R7663 T9502 T9501 arg1Of TSS,Prf1
R7664 T9502 T9503 arg1Of TSS,and
R7665 T9503 T9499 arg2Of and,to
R7668 T9507 T9503 arg2Of enhancer,and
R7669 T9507 T9504 arg1Of enhancer,the
R7670 T9507 T9505 arg1Of enhancer,−1
R7671 T9507 T9506 arg1Of enhancer,kb
R7672 T9510 T9509 arg1Of binding,this
R7673 T9510 T9511 arg1Of binding,was
R7674 T9510 T9513 arg1Of binding,greater
R7675 T9510 T9536 arg1Of binding,comparable
R7676 T9511 T9508 arg2Of was,;
R7677 T9513 T9512 arg1Of greater,substantially
R7678 T9513 T9514 arg1Of greater,than
R7679 T9513 T9535 arg1Of greater,and
R7680 T9515 T9514 arg2Of that,than
R7681 T9515 T9516 arg2Of that,observed
R7682 T9515 T9524 arg1Of that,","
R7684 T9516 T9517 arg1Of observed,at
R7687 T9519 T9517 arg2Of promoter,at
R7688 T9519 T9518 arg1Of promoter,the
R7689 T9519 T9520 arg1Of promoter,of
R7695 T9523 T9520 arg2Of gene,of
R7696 T9523 T9521 arg1Of gene,the
R7697 T9523 T9522 arg1Of gene,Il2rb
R7700 T9528 T9524 arg2Of target,","
R7701 T9528 T9525 arg1Of target,a
R7702 T9528 T9526 arg1Of target,known
R7703 T9528 T9527 arg1Of target,direct
R7704 T9528 T9529 arg1Of target,of
R7706 T9530 T9529 arg2Of Eomes,of
R7707 T9530 T9531 arg1Of Eomes,(
R7709 T9532 T9531 arg2Of 8,(
R7711 T9533 T9531 arg3Of ),(
R7712 T9535 T9511 arg2Of and,was
R7713 T9535 T9534 arg1Of and,","
R7714 T9536 T9535 arg2Of comparable,and
R7715 T9536 T9537 arg1Of comparable,to
R7716 T9538 T9537 arg2Of that,to
R7717 T9538 T9539 arg2Of that,observed
R7718 T9538 T9544 arg1Of that,","
R7719 T9539 T9540 arg1Of observed,at
R7722 T9543 T9540 arg2Of TSS,at
R7723 T9543 T9541 arg1Of TSS,the
R7724 T9543 T9542 arg1Of TSS,Ifng
R7727 T9547 T9544 arg2Of target,","
R7728 T9547 T9545 arg1Of target,a
R7729 T9547 T9546 arg2Of target,known
R7730 T9547 T9548 arg1Of target,of
R7731 T9547 T9551 arg1Of target,in
R7733 T9547 T9563 arg1Of target,(
R7734 T9550 T9548 arg2Of proteins,of
R7735 T9550 T9549 arg1Of proteins,T-box
R7738 T9557 T9551 arg2Of cells,in
R7739 T9557 T9552 arg1Of cells,both
R7740 T9557 T9553 arg1Of cells,Th1
R7741 T9557 T9554 arg1Of cells,and
R7742 T9557 T9555 arg1Of cells,CD8+
R7743 T9557 T9556 arg1Of cells,T
R7744 T9557 T9558 arg1Of cells,(
R7747 T9561 T9558 arg2Of D,(
R7748 T9561 T9559 arg1Of D,Fig.
R7749 T9561 T9560 arg1Of D,3
R7750 T9562 T9558 arg3Of ),(
R7753 T9564 T9563 arg2Of 17,(
R7754 T9565 T9563 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8548 0-5 NNS denotes Eomes
T8549 6-11 VBN denotes bound
T8550 12-21 RB denotes primarily
T8551 22-24 TO denotes to
T8552 25-28 DT denotes the
T8553 29-33 NNP denotes Prf1
T8554 34-37 NNP denotes TSS
T8555 38-41 CC denotes and
T8556 42-45 DT denotes the
T8557 46-47 NN denotes −
T8558 47-48 CD denotes 1
T8559 49-51 NN denotes kb
T8560 52-60 NN denotes enhancer
T8561 60-61 : denotes ;
T8562 62-66 DT denotes this
T8563 67-74 JJ denotes binding
T8564 75-78 VBD denotes was
T8565 79-92 RB denotes substantially
T8566 93-100 JJR denotes greater
T8567 101-105 IN denotes than
T8568 106-110 DT denotes that
T8569 111-119 VBD denotes observed
T8570 120-122 IN denotes at
T8571 123-126 DT denotes the
T8572 127-135 NN denotes promoter
T8573 136-138 IN denotes of
T8574 139-142 DT denotes the
T8575 143-148 JJ denotes Il2rb
T8576 149-153 NN denotes gene
T8577 153-154 , denotes ,
T8578 155-156 DT denotes a
T8579 157-162 VBN denotes known
T8580 163-169 JJ denotes direct
T8581 170-176 NN denotes target
T8582 177-179 IN denotes of
T8583 180-185 NNP denotes Eomes
T8584 186-187 -LRB- denotes (
T8585 187-188 CD denotes 8
T8586 188-189 -RRB- denotes )
T8587 189-190 , denotes ,
T8588 191-194 CC denotes and
T8589 195-205 JJ denotes comparable
T8590 206-208 TO denotes to
T8591 209-213 DT denotes that
T8592 214-222 VBD denotes observed
T8593 223-225 IN denotes at
T8594 226-229 DT denotes the
T8595 230-234 NNP denotes Ifng
T8596 235-238 NNP denotes TSS
T8597 238-239 , denotes ,
T8598 240-241 DT denotes a
T8599 242-247 VBN denotes known
T8600 248-254 NN denotes target
T8601 255-257 IN denotes of
T8602 258-263 NN denotes T-box
T8603 264-272 NNS denotes proteins
T8604 273-275 IN denotes in
T8605 276-280 DT denotes both
T8606 281-284 CD denotes Th1
T8607 285-288 CC denotes and
T8608 289-292 CD denotes CD8
T8609 292-293 CD denotes +
T8610 294-295 NNP denotes T
T8611 296-301 NNS denotes cells
T8612 302-303 -LRB- denotes (
T8613 303-307 NN denotes Fig.
T8614 308-309 CD denotes 3
T8615 310-311 NNP denotes D
T8616 311-312 -RRB- denotes )
T8617 313-314 -LRB- denotes (
T8618 314-316 CD denotes 17
T8619 316-317 -RRB- denotes )
T8620 317-318 . denotes .
R6725 T8548 T8564 nsubj Eomes,was
R6726 T8549 T8548 acl bound,Eomes
R6727 T8550 T8549 advmod primarily,bound
R6728 T8551 T8549 prep to,bound
R6729 T8552 T8554 det the,TSS
R6730 T8553 T8554 compound Prf1,TSS
R6731 T8554 T8551 pobj TSS,to
R6732 T8555 T8554 cc and,TSS
R6733 T8556 T8560 det the,enhancer
R6734 T8557 T8560 nmod −,enhancer
R6735 T8558 T8559 nummod 1,kb
R6736 T8559 T8560 compound kb,enhancer
R6737 T8560 T8554 conj enhancer,TSS
R6738 T8561 T8564 punct ;,was
R6739 T8562 T8563 det this,binding
R6740 T8563 T8564 nsubj binding,was
R6741 T8564 T8564 ROOT was,was
R6742 T8565 T8566 advmod substantially,greater
R6743 T8566 T8564 acomp greater,was
R6744 T8567 T8566 prep than,greater
R6745 T8568 T8567 pobj that,than
R6746 T8569 T8568 acl observed,that
R6747 T8570 T8569 prep at,observed
R6748 T8571 T8572 det the,promoter
R6749 T8572 T8570 pobj promoter,at
R6750 T8573 T8572 prep of,promoter
R6751 T8574 T8576 det the,gene
R6752 T8575 T8576 amod Il2rb,gene
R6753 T8576 T8573 pobj gene,of
R6754 T8577 T8576 punct ",",gene
R6755 T8578 T8581 det a,target
R6756 T8579 T8581 amod known,target
R6757 T8580 T8581 amod direct,target
R6758 T8581 T8576 appos target,gene
R6759 T8582 T8581 prep of,target
R6760 T8583 T8582 pobj Eomes,of
R6761 T8584 T8583 punct (,Eomes
R6762 T8585 T8583 appos 8,Eomes
R6763 T8586 T8583 punct ),Eomes
R6764 T8587 T8581 punct ",",target
R6765 T8588 T8581 cc and,target
R6766 T8589 T8581 conj comparable,target
R6767 T8590 T8589 prep to,comparable
R6768 T8591 T8590 pobj that,to
R6769 T8592 T8591 acl observed,that
R6770 T8593 T8592 prep at,observed
R6771 T8594 T8596 det the,TSS
R6772 T8595 T8596 compound Ifng,TSS
R6773 T8596 T8593 pobj TSS,at
R6774 T8597 T8596 punct ",",TSS
R6775 T8598 T8600 det a,target
R6776 T8599 T8600 amod known,target
R6777 T8600 T8596 appos target,TSS
R6778 T8601 T8600 prep of,target
R6779 T8602 T8603 compound T-box,proteins
R6780 T8603 T8601 pobj proteins,of
R6781 T8604 T8600 prep in,target
R6782 T8605 T8606 det both,Th1
R6783 T8606 T8604 pobj Th1,in
R6784 T8607 T8606 cc and,Th1
R6785 T8608 T8611 nummod CD8,cells
R6786 T8609 T8611 nummod +,cells
R6787 T8610 T8611 compound T,cells
R6788 T8611 T8606 conj cells,Th1
R6789 T8612 T8613 punct (,Fig.
R6790 T8613 T8615 nmod Fig.,D
R6791 T8614 T8613 nummod 3,Fig.
R6792 T8615 T8600 npadvmod D,target
R6793 T8616 T8596 punct ),TSS
R6794 T8617 T8596 punct (,TSS
R6795 T8618 T8596 appos 17,TSS
R6796 T8619 T8596 punct ),TSS
R6797 T8620 T8564 punct .,was

GO-MF

Id Subject Object Predicate Lexical cue
T10034 52-74 http://purl.obolibrary.org/obo/GO_0035326 denotes enhancer; this binding
T10035 67-74 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T10047 296-301 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7975 0-318 Sentence denotes Eomes bound primarily to the Prf1 TSS and the −1 kb enhancer; this binding was substantially greater than that observed at the promoter of the Il2rb gene, a known direct target of Eomes (8), and comparable to that observed at the Ifng TSS, a known target of T-box proteins in both Th1 and CD8+ T cells (Fig. 3 D) (17).
T104 0-318 Sentence denotes Eomes bound primarily to the Prf1 TSS and the −1 kb enhancer; this binding was substantially greater than that observed at the promoter of the Il2rb gene, a known direct target of Eomes (8), and comparable to that observed at the Ifng TSS, a known target of T-box proteins in both Th1 and CD8+ T cells (Fig. 3 D) (17).

events-check-again

Id Subject Object Predicate Lexical cue
T11143 0-5 Protein denotes Eomes
T11144 6-11 Binding denotes bound
T11145 6-11 Binding denotes bound
T11146 29-33 Protein denotes Prf1
T11147 34-37 Entity denotes TSS
T11148 46-60 Entity denotes −1 kb enhancer
T11149 106-110 Binding denotes that
T11150 127-135 Entity denotes promoter
T11151 143-148 Protein denotes Il2rb
T11152 170-176 Binding denotes target
T11153 180-185 Protein denotes Eomes
T11154 209-213 Binding denotes that
T11155 230-234 Protein denotes Ifng
T11156 235-238 Entity denotes TSS
T11157 248-254 Binding denotes target
T11158 289-292 Protein denotes CD8
R8701 T11143 T11149 themeOf Eomes,that
R8708 T11143 T11154 themeOf Eomes,that
R8710 T11143 T11145 themeOf Eomes,bound
R8711 T11143 T11144 themeOf Eomes,bound
R8713 T11147 T11145 themeOf TSS,bound
R8722 T11147 T11146 partOf TSS,Prf1
R8724 T11148 T11144 themeOf −1 kb enhancer,bound
R8727 T11148 T11146 partOf −1 kb enhancer,Prf1
R8729 T11150 T11149 themeOf promoter,that
R8732 T11150 T11151 partOf promoter,Il2rb
R8734 T11150 T11152 themeOf promoter,target
R8737 T11153 T11152 themeOf Eomes,target
R8739 T11156 T11154 themeOf TSS,that
R8745 T11156 T11155 partOf TSS,Ifng
R8752 T11156 T11157 themeOf TSS,target

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11334 29-37 Protein denotes Prf1 TSS
T11335 143-153 Protein denotes Il2rb gene
T11336 230-238 Protein denotes Ifng TSS
T11337 258-272 Protein denotes T-box proteins
T11338 281-284 Protein denotes Th1
T11339 289-293 Protein denotes CD8+
T11340 52-60 Entity denotes enhancer
T11341 127-135 Entity denotes promoter
T11342 170-176 Binding denotes target
T11343 248-254 Binding denotes target
T11344 6-11 Binding denotes bound
R8896 T11334 T11344 themeOf Prf1 TSS,bound
R8897 T11334 T11340 partOf Prf1 TSS,enhancer
R8898 T11335 T11342 themeOf Il2rb gene,target
R8899 T11335 T11341 partOf Il2rb gene,promoter
R8900 T11336 T11343 themeOf Ifng TSS,target
R8901 T11337 T11343 themeOf T-box proteins,target
R8902 T11340 T11344 Site enhancer,bound
R8903 T11341 T11342 Site promoter,target

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7866 0-5 Protein denotes Eomes
T7867 6-11 Binding denotes bound
T7868 6-11 Binding denotes bound
T7869 29-33 Protein denotes Prf1
T7870 34-37 Entity denotes TSS
T7879 235-238 Entity denotes TSS
T7880 248-254 Binding denotes target
T7881 289-292 Protein denotes CD8
T7871 46-60 Entity denotes −1 kb enhancer
T7872 106-110 Binding denotes that
T7873 127-135 Entity denotes promoter
T7874 143-148 Protein denotes Il2rb
T7875 170-176 Binding denotes target
T7876 180-185 Protein denotes Eomes
T7877 209-213 Binding denotes that
T7878 230-234 Protein denotes Ifng
R6111 T7866 T7872 themeOf Eomes,that
R6112 T7866 T7877 themeOf Eomes,that
R6113 T7866 T7868 themeOf Eomes,bound
R6114 T7866 T7867 themeOf Eomes,bound
R6115 T7870 T7868 themeOf TSS,bound
R6116 T7870 T7869 partOf TSS,Prf1
R6117 T7871 T7867 themeOf −1 kb enhancer,bound
R6118 T7871 T7869 partOf −1 kb enhancer,Prf1
R6119 T7873 T7872 themeOf promoter,that
R6120 T7873 T7874 partOf promoter,Il2rb
R6121 T7873 T7875 themeOf promoter,target
R6122 T7876 T7875 themeOf Eomes,target
R6123 T7879 T7877 themeOf TSS,that
R6124 T7879 T7878 partOf TSS,Ifng
R6125 T7879 T7880 themeOf TSS,target

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9945 0-5 O95936 denotes Eomes
T9946 29-33 P14222 denotes Prf1
T9947 180-185 O95936 denotes Eomes
T9948 230-234 P01579 denotes Ifng
T9949 289-292 P01732 denotes CD8
T9950 289-292 P10966 denotes CD8

test2

Id Subject Object Predicate Lexical cue Negation
T7673 0-5 Protein denotes Eomes
T7674 6-11 Binding denotes bound true
T7675 29-33 Protein denotes Prf1
T7676 34-37 Entity denotes TSS
T7677 46-60 Entity denotes −1 kb enhancer
T7678 67-74 Binding denotes binding
T7679 127-135 Entity denotes promoter
T7680 143-148 Protein denotes Il2rb
T7681 170-176 Binding denotes target
T7682 180-185 Protein denotes Eomes
T7683 230-234 Protein denotes Ifng
T7684 235-238 Entity denotes TSS
T7685 289-292 Protein denotes CD8
R5984 T7673 T7674 themeOf Eomes,bound
R5985 T7676 T7674 themeOf TSS,bound
R5986 T7676 T7675 partOf TSS,Prf1
R5987 T7677 T7674 themeOf −1 kb enhancer,bound
R5988 T7677 T7675 partOf −1 kb enhancer,Prf1
R5989 T7679 T7682 partOf promoter,Eomes
R5990 T7679 T7681 themeOf promoter,target
R5991 T7679 T7680 partOf promoter,Il2rb
R5992 T7682 T7681 themeOf Eomes,target
R5993 T7684 T7683 partOf TSS,Ifng