> top > docs > PMC:2626671 > spans > 1548-1867 > annotations

PMC:2626671 / 1548-1867 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1566 0-2 IN denotes In
T1567 3-7 DT denotes this
T1568 8-13 NN denotes study
T1569 13-14 -COMMA- denotes ,
T1570 15-17 PRP denotes we
T1571 18-22 VB denotes have
T1572 23-27 VB denotes used
T1573 28-30 FW denotes in
T1574 31-36 FW denotes vitro
T1575 37-44 NN denotes systems
T1576 45-49 JJ denotes such
T1577 50-52 IN denotes as
T1578 53-58 DT denotes those
T1579 59-68 VB denotes developed
T1580 69-71 TO denotes to
T1581 72-77 VB denotes study
T1582 78-84 NN denotes CD4+ T
T1583 85-89 NN denotes cell
T1584 90-105 NN denotes differentiation
T1585 106-108 TO denotes to
T1586 109-115 VB denotes define
T1587 116-119 DT denotes the
T1588 120-129 JJ denotes molecular
T1589 130-135 NN denotes basis
T1590 136-138 IN denotes of
T1591 139-147 NN denotes effector
T1592 148-151 NN denotes CTL
T1593 152-167 NN denotes differentiation
T1594 168-169 -LRB- denotes (
T1595 169-173 NN denotes 5, 6
T1596 173-174 -RRB- denotes )
T1597 174-179 NN denotes . The
T1598 180-185 NN denotes T-box
T1599 186-199 NN denotes transcription
T1600 200-207 NN denotes factors
T1601 208-220 NN denotes Eomesodermin
T1602 221-222 -LRB- denotes (
T1603 222-227 NN denotes Eomes
T1604 227-228 -RRB- denotes )
T1605 229-232 CC denotes and
T1606 233-238 NN denotes T-bet
T1607 239-242 VB denotes are
T1608 243-249 VB denotes needed
T1609 250-253 IN denotes for
T1610 254-263 JJ denotes important
T1611 264-271 NN denotes aspects
T1612 272-274 IN denotes of
T1613 275-283 NN denotes effector
T1614 284-287 CC denotes and
T1615 288-294 NN denotes memory
T1616 295-298 NN denotes CTL
T1617 299-314 NN denotes differentiation
T1618 315-316 -LRB- denotes (
T1619 316-317 CD denotes 7
T1620 317-318 -RRB- denotes )
R1293 T1568 T1566 arg2Of study,In
R1294 T1568 T1567 arg1Of study,this
R1295 T1570 T1571 arg1Of we,have
R1296 T1570 T1572 arg1Of we,used
R1297 T1570 T1586 arg1Of we,define
R1298 T1572 T1571 arg2Of used,have
R1299 T1572 T1605 arg1Of used,and
R1300 T1574 T1573 arg1Of vitro,in
R1301 T1575 T1572 arg2Of systems,used
R1302 T1575 T1574 arg1Of systems,vitro
R1303 T1575 T1577 arg1Of systems,as
R1304 T1575 T1579 arg2Of systems,developed
R1305 T1577 T1576 arg1Of as,such
R1306 T1578 T1577 arg2Of those,as
R1307 T1579 T1580 modOf developed,to
R1308 T1581 T1580 arg1Of study,to
R1309 T1584 T1581 arg2Of differentiation,study
R1310 T1584 T1582 arg1Of differentiation,CD4+ T
R1311 T1584 T1583 arg1Of differentiation,cell
R1312 T1586 T1572 arg3Of define,used
R1313 T1586 T1585 arg1Of define,to
R1314 T1589 T1586 arg2Of basis,define
R1315 T1589 T1587 arg1Of basis,the
R1316 T1589 T1588 arg1Of basis,molecular
R1317 T1589 T1590 arg1Of basis,of
R1318 T1593 T1591 arg1Of differentiation,effector
R1319 T1593 T1592 arg1Of differentiation,CTL
R1320 T1593 T1594 arg1Of differentiation,(
R1321 T1595 T1594 arg2Of "5, 6",(
R1322 T1596 T1594 arg3Of ),(
R1323 T1601 T1590 arg2Of Eomesodermin,of
R1324 T1604 T1602 arg3Of ),(
R1325 T1601 T1593 arg1Of Eomesodermin,differentiation
R1326 T1601 T1597 arg1Of Eomesodermin,". The"
R1327 T1601 T1598 arg1Of Eomesodermin,T-box
R1328 T1605 T1566 arg1Of and,In
R1329 T1605 T1569 arg1Of and,","
R1330 T1601 T1599 arg1Of Eomesodermin,transcription
R1331 T1601 T1600 arg1Of Eomesodermin,factors
R1332 T1606 T1607 arg1Of T-bet,are
R1333 T1606 T1608 arg2Of T-bet,needed
R1334 T1601 T1602 arg1Of Eomesodermin,(
R1335 T1603 T1602 arg2Of Eomes,(
R1336 T1608 T1605 arg2Of needed,and
R1337 T1608 T1607 arg2Of needed,are
R1338 T1608 T1609 arg1Of needed,for
R1339 T1611 T1610 arg1Of aspects,important
R1340 T1611 T1612 arg1Of aspects,of
R1341 T1611 T1614 arg1Of aspects,and
R1342 T1613 T1612 arg2Of effector,of
R1344 T1614 T1609 arg2Of and,for
R1345 T1617 T1614 arg2Of differentiation,and
R1346 T1617 T1615 arg1Of differentiation,memory
R1347 T1617 T1616 arg1Of differentiation,CTL
R1348 T1617 T1618 arg1Of differentiation,(
R1349 T1619 T1618 arg2Of 7,(
R1350 T1620 T1618 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T945 0-2 IN denotes In
T946 3-7 DT denotes this
T947 8-13 NN denotes study
T948 13-14 , denotes ,
T949 15-17 PRP denotes we
T950 18-22 VBP denotes have
T951 23-27 VBN denotes used
T952 28-30 IN denotes in
T953 31-36 NN denotes vitro
T954 37-44 NNS denotes systems
T955 45-49 JJ denotes such
T956 50-52 IN denotes as
T957 53-58 DT denotes those
T958 59-68 VBN denotes developed
T959 69-71 TO denotes to
T960 72-77 VB denotes study
T961 78-81 NNP denotes CD4
T962 81-82 CD denotes +
T963 83-84 NNP denotes T
T964 85-89 NN denotes cell
T965 90-105 NN denotes differentiation
T966 106-108 TO denotes to
T967 109-115 VB denotes define
T968 116-119 DT denotes the
T969 120-129 JJ denotes molecular
T970 130-135 NN denotes basis
T971 136-138 IN denotes of
T972 139-147 NN denotes effector
T973 148-151 NNP denotes CTL
T974 152-167 NN denotes differentiation
T975 168-169 -LRB- denotes (
T976 169-173 CD denotes 5, 6
T977 173-174 -RRB- denotes )
T978 174-175 . denotes .
T979 176-179 DT denotes The
T980 180-185 NN denotes T-box
T981 186-199 NN denotes transcription
T982 200-207 NNS denotes factors
T983 208-220 NNP denotes Eomesodermin
T984 221-222 -LRB- denotes (
T985 222-227 NNP denotes Eomes
T986 227-228 -RRB- denotes )
T987 229-232 CC denotes and
T988 233-238 NNP denotes T-bet
T989 239-242 VBP denotes are
T990 243-249 VBN denotes needed
T991 250-253 IN denotes for
T992 254-263 JJ denotes important
T993 264-271 NNS denotes aspects
T994 272-274 IN denotes of
T995 275-283 NN denotes effector
T996 284-287 CC denotes and
T997 288-294 NN denotes memory
T998 295-298 NNP denotes CTL
T999 299-314 NN denotes differentiation
T1000 315-316 -LRB- denotes (
T1001 316-317 CD denotes 7
T1002 317-318 -RRB- denotes )
T1003 318-319 . denotes .
R711 T945 T951 prep In,used
R712 T946 T947 det this,study
R713 T947 T945 pobj study,In
R714 T948 T951 punct ",",used
R715 T949 T951 nsubj we,used
R716 T950 T951 aux have,used
R717 T951 T951 ROOT used,used
R718 T952 T951 prep in,used
R719 T953 T954 amod vitro,systems
R720 T954 T952 pobj systems,in
R721 T955 T956 amod such,as
R722 T956 T954 prep as,systems
R723 T957 T956 pobj those,as
R724 T958 T957 acl developed,those
R725 T959 T960 aux to,study
R726 T960 T958 xcomp study,developed
R727 T961 T965 nmod CD4,differentiation
R728 T962 T965 nummod +,differentiation
R729 T963 T964 compound T,cell
R730 T964 T965 compound cell,differentiation
R731 T965 T960 dobj differentiation,study
R732 T966 T967 aux to,define
R733 T967 T960 advcl define,study
R734 T968 T970 det the,basis
R735 T969 T970 amod molecular,basis
R736 T970 T967 dobj basis,define
R737 T971 T970 prep of,basis
R738 T972 T974 compound effector,differentiation
R739 T973 T974 compound CTL,differentiation
R740 T974 T971 pobj differentiation,of
R741 T975 T974 punct (,differentiation
R742 T976 T974 appos "5, 6",differentiation
R743 T977 T974 punct ),differentiation
R744 T978 T951 punct .,used
R745 T979 T982 det The,factors
R746 T980 T982 amod T-box,factors
R747 T981 T982 compound transcription,factors
R748 T982 T990 nsubjpass factors,needed
R749 T983 T990 nsubjpass Eomesodermin,needed
R750 T984 T985 punct (,Eomes
R751 T985 T983 appos Eomes,Eomesodermin
R752 T986 T985 punct ),Eomes
R753 T987 T983 cc and,Eomesodermin
R754 T988 T983 conj T-bet,Eomesodermin
R755 T989 T990 auxpass are,needed
R756 T990 T990 ROOT needed,needed
R757 T991 T990 prep for,needed
R758 T992 T993 amod important,aspects
R759 T993 T991 pobj aspects,for
R760 T994 T993 prep of,aspects
R761 T995 T994 pobj effector,of
R762 T996 T995 cc and,effector
R763 T997 T999 compound memory,differentiation
R764 T998 T999 compound CTL,differentiation
R765 T999 T995 conj differentiation,effector
R766 T1000 T1001 punct (,7
R767 T1001 T999 npadvmod 7,differentiation
R768 T1002 T990 punct ),needed
R769 T1003 T990 punct .,needed

GO-BP

Id Subject Object Predicate Lexical cue
T864 85-105 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation
T872 186-199 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T876 288-294 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T843 83-105 http://purl.obolibrary.org/obo/GO_0002572 denotes T cell differentiation
T846 83-105 http://purl.obolibrary.org/obo/GO_0045580 denotes T cell differentiation
T849 83-105 http://purl.obolibrary.org/obo/GO_0001865 denotes T cell differentiation
T852 83-105 http://purl.obolibrary.org/obo/GO_0030217 denotes T cell differentiation
T855 83-105 http://purl.obolibrary.org/obo/GO_0042093 denotes T cell differentiation
T858 83-105 http://purl.obolibrary.org/obo/GO_0045066 denotes T cell differentiation
T861 83-105 http://purl.obolibrary.org/obo/GO_0043379 denotes T cell differentiation

sentences

Id Subject Object Predicate Lexical cue
T830 0-319 Sentence denotes In this study, we have used in vitro systems such as those developed to study CD4+ T cell differentiation to define the molecular basis of effector CTL differentiation (5, 6). The T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7).
T11 0-175 Sentence denotes In this study, we have used in vitro systems such as those developed to study CD4+ T cell differentiation to define the molecular basis of effector CTL differentiation (5, 6).
T12 176-319 Sentence denotes The T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7).

events-check-again

Id Subject Object Predicate Lexical cue
T2563 78-81 Protein denotes CD4
T2564 208-220 Protein denotes Eomesodermin
T2565 222-227 Protein denotes Eomes
T2566 233-238 Protein denotes T-bet
R2003 T2565 T2564 equivalentTo Eomes,Eomesodermin

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1488 78-81 Protein denotes CD4
T1497 208-220 Protein denotes Eomesodermin
T1498 222-227 Protein denotes Eomes
T1499 233-238 Protein denotes T-bet
R1224 T1498 T1497 equivalentTo Eomes,Eomesodermin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2005 78-81 P01730 denotes CD4
T2006 222-227 O95936 denotes Eomes
T2007 233-238 Q9UL17 denotes T-bet

test2

Id Subject Object Predicate Lexical cue Negation
T748 78-81 Protein denotes CD4
T749 208-220 Protein denotes Eomesodermin
T750 222-227 Protein denotes Eomes
T751 233-238 Protein denotes T-bet true
R595 T750 T749 equivalentTo Eomes,Eomesodermin