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PMC:2626671 / 15058-15589 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20185 0-3 NNP denotes Key
T20186 4-8 NN denotes role
T20187 9-12 IN denotes for
T20188 13-18 NNP denotes Runx3
T20189 19-21 IN denotes in
T20190 22-30 NN denotes effector
T20191 31-34 NNP denotes CTL
T20192 35-50 NN denotes differentiation
T20193 50-51 . denotes .
T20194 52-53 -LRB- denotes (
T20195 53-54 NNP denotes A
T20196 54-55 -RRB- denotes )
T20197 56-63 NNP denotes Western
T20198 64-72 NN denotes analysis
T20199 73-75 IN denotes of
T20200 76-81 NNP denotes Runx3
T20201 81-82 , denotes ,
T20202 83-88 NNP denotes Eomes
T20203 88-89 , denotes ,
T20204 90-95 NNP denotes T-bet
T20205 95-96 , denotes ,
T20206 97-100 CC denotes and
T20207 101-109 NN denotes perforin
T20208 110-120 NN denotes expression
T20209 121-123 IN denotes in
T20210 124-129 NNP denotes Runx3
T20211 129-130 NNP denotes +
T20212 130-131 VBD denotes /
T20213 131-132 CD denotes +
T20214 133-139 CC denotes versus
T20215 140-145 NNP denotes Runx3
T20216 145-146 FW denotes −
T20217 146-147 FW denotes /
T20218 147-148 FW denotes −
T20219 149-152 FW denotes CD8
T20220 152-153 FW denotes +
T20221 154-156 FW denotes SP
T20222 157-158 FW denotes T
T20223 159-164 NNS denotes cells
T20224 165-179 VBN denotes differentiated
T20225 180-183 IN denotes for
T20226 184-185 CD denotes 6
T20227 186-188 NN denotes d.
T20228 189-196 NN denotes β-Actin
T20229 197-200 VBD denotes was
T20230 201-205 VBN denotes used
T20231 206-208 IN denotes as
T20232 209-210 DT denotes a
T20233 211-218 VBG denotes loading
T20234 219-226 NN denotes control
T20235 226-227 . denotes .
T20236 228-229 -LRB- denotes (
T20237 229-230 NNP denotes B
T20238 230-231 -RRB- denotes )
T20239 232-240 NNP denotes Northern
T20240 241-245 NN denotes blot
T20241 246-254 NN denotes analysis
T20242 255-257 IN denotes of
T20243 258-262 NNP denotes Prf1
T20244 263-267 NNP denotes mRNA
T20245 268-278 NN denotes expression
T20246 279-281 IN denotes in
T20247 282-287 NNP denotes Runx3
T20248 287-288 NNP denotes +
T20249 288-289 VBD denotes /
T20250 289-290 CD denotes +
T20251 291-297 CC denotes versus
T20252 298-303 NNP denotes Runx3
T20253 303-304 FW denotes −
T20254 304-305 FW denotes /
T20255 305-306 FW denotes −
T20256 307-310 FW denotes CD8
T20257 310-311 FW denotes +
T20258 312-313 FW denotes T
T20259 314-319 NNS denotes cells
T20260 320-334 VBN denotes differentiated
T20261 335-338 IN denotes for
T20262 339-340 CD denotes 6
T20263 341-343 NN denotes d.
T20264 344-345 NN denotes β
T20265 346-351 NNP denotes Actin
T20266 352-355 VBD denotes was
T20267 356-360 VBN denotes used
T20268 361-363 IN denotes as
T20269 364-365 DT denotes a
T20270 366-373 VBG denotes loading
T20271 374-381 NN denotes control
T20272 381-382 . denotes .
T20273 383-384 -LRB- denotes (
T20274 384-385 $ denotes C
T20275 385-386 -RRB- denotes )
T20276 387-397 NN denotes Expression
T20277 398-400 IN denotes of
T20278 401-409 NN denotes granzyme
T20279 410-411 NNP denotes B
T20280 411-412 , denotes ,
T20281 413-418 NNP denotes IFN-γ
T20282 418-419 , denotes ,
T20283 420-423 NNP denotes TNF
T20284 423-424 , denotes ,
T20285 425-428 CC denotes and
T20286 429-433 NN denotes IL-2
T20287 434-436 IN denotes by
T20288 437-444 VBG denotes resting
T20289 445-447 CC denotes or
T20290 448-460 VBN denotes restimulated
T20291 461-462 -LRB- denotes (
T20292 462-463 CD denotes 6
T20293 464-465 NN denotes h
T20294 465-466 -RRB- denotes )
T20295 467-472 JJ denotes Runx3
T20296 472-473 NN denotes +
T20297 473-474 NN denotes /
T20298 474-475 NN denotes +
T20299 476-482 IN denotes versus
T20300 483-488 NNP denotes Runx3
T20301 488-489 NNP denotes −
T20302 489-490 VBD denotes /
T20303 490-491 CD denotes −
T20304 492-495 CD denotes CD8
T20305 495-496 NN denotes +
T20306 497-499 NNP denotes SP
T20307 500-501 NNP denotes T
T20308 502-507 NNS denotes cells
T20309 508-522 VBD denotes differentiated
T20310 523-526 IN denotes for
T20311 527-528 CD denotes 6
T20312 529-530 LS denotes d
T20313 530-531 . denotes .
R15553 T20185 T20186 amod Key,role
R15554 T20186 T20186 ROOT role,role
R15555 T20187 T20186 prep for,role
R15556 T20188 T20187 pobj Runx3,for
R15557 T20189 T20186 prep in,role
R15558 T20190 T20191 compound effector,CTL
R15559 T20191 T20192 compound CTL,differentiation
R15560 T20192 T20189 pobj differentiation,in
R15561 T20193 T20186 punct .,role
R15562 T20194 T20198 punct (,analysis
R15563 T20195 T20198 nmod A,analysis
R15564 T20196 T20195 punct ),A
R15565 T20197 T20198 amod Western,analysis
R15566 T20198 T20212 nsubj analysis,/
R15567 T20199 T20198 prep of,analysis
R15568 T20200 T20199 pobj Runx3,of
R15569 T20201 T20200 punct ",",Runx3
R15570 T20202 T20200 conj Eomes,Runx3
R15571 T20203 T20202 punct ",",Eomes
R15572 T20204 T20202 conj T-bet,Eomes
R15573 T20205 T20204 punct ",",T-bet
R15574 T20206 T20204 cc and,T-bet
R15575 T20207 T20208 compound perforin,expression
R15576 T20208 T20198 conj expression,analysis
R15577 T20209 T20198 prep in,analysis
R15578 T20210 T20211 compound Runx3,+
R15579 T20211 T20209 pobj +,in
R15580 T20212 T20212 ROOT /,/
R15581 T20213 T20223 nummod +,cells
R15582 T20214 T20213 cc versus,+
R15583 T20215 T20223 nmod Runx3,cells
R15584 T20216 T20223 nmod −,cells
R15585 T20217 T20223 nmod /,cells
R15586 T20218 T20223 nmod −,cells
R15587 T20219 T20223 nmod CD8,cells
R15588 T20220 T20223 nmod +,cells
R15589 T20221 T20223 nmod SP,cells
R15590 T20222 T20223 compound T,cells
R15591 T20223 T20224 nsubj cells,differentiated
R15592 T20224 T20212 ccomp differentiated,/
R15593 T20225 T20224 prep for,differentiated
R15594 T20226 T20228 nummod 6,β-Actin
R15595 T20227 T20228 compound d.,β-Actin
R15596 T20228 T20225 pobj β-Actin,for
R15597 T20229 T20230 auxpass was,used
R15598 T20230 T20212 conj used,/
R15599 T20231 T20230 prep as,used
R15600 T20232 T20234 det a,control
R15601 T20233 T20234 compound loading,control
R15602 T20234 T20231 pobj control,as
R15603 T20235 T20212 punct .,/
R15604 T20236 T20241 punct (,analysis
R15605 T20237 T20241 nmod B,analysis
R15606 T20238 T20237 punct ),B
R15607 T20239 T20240 compound Northern,blot
R15608 T20240 T20241 compound blot,analysis
R15609 T20241 T20249 nsubj analysis,/
R15610 T20242 T20241 prep of,analysis
R15611 T20243 T20244 compound Prf1,mRNA
R15612 T20244 T20245 compound mRNA,expression
R15613 T20245 T20242 pobj expression,of
R15614 T20246 T20241 prep in,analysis
R15615 T20247 T20248 compound Runx3,+
R15616 T20248 T20246 pobj +,in
R15617 T20249 T20267 ccomp /,used
R15618 T20250 T20259 nummod +,cells
R15619 T20251 T20250 cc versus,+
R15620 T20252 T20259 nmod Runx3,cells
R15621 T20253 T20259 nmod −,cells
R15622 T20254 T20259 nmod /,cells
R15623 T20255 T20259 nmod −,cells
R15624 T20256 T20259 nmod CD8,cells
R15625 T20257 T20259 nmod +,cells
R15626 T20258 T20259 compound T,cells
R15627 T20259 T20260 nsubj cells,differentiated
R15628 T20260 T20249 ccomp differentiated,/
R15629 T20261 T20260 prep for,differentiated
R15630 T20262 T20264 nummod 6,β
R15631 T20263 T20264 compound d.,β
R15632 T20264 T20261 pobj β,for
R15633 T20265 T20267 nsubjpass Actin,used
R15634 T20266 T20267 auxpass was,used
R15635 T20267 T20267 ROOT used,used
R15636 T20268 T20267 prep as,used
R15637 T20269 T20271 det a,control
R15638 T20270 T20271 compound loading,control
R15639 T20271 T20268 pobj control,as
R15640 T20272 T20267 punct .,used
R15641 T20273 T20274 punct (,C
R15642 T20274 T20276 compound C,Expression
R15643 T20275 T20274 punct ),C
R15644 T20276 T20276 ROOT Expression,Expression
R15645 T20277 T20276 prep of,Expression
R15646 T20278 T20279 compound granzyme,B
R15647 T20279 T20277 pobj B,of
R15648 T20280 T20279 punct ",",B
R15649 T20281 T20279 appos IFN-γ,B
R15650 T20282 T20281 punct ",",IFN-γ
R15651 T20283 T20281 conj TNF,IFN-γ
R15652 T20284 T20283 punct ",",TNF
R15653 T20285 T20283 cc and,TNF
R15654 T20286 T20283 conj IL-2,TNF
R15655 T20287 T20276 prep by,Expression
R15656 T20288 T20287 pcomp resting,by
R15657 T20289 T20288 cc or,resting
R15658 T20290 T20288 conj restimulated,resting
R15659 T20291 T20290 punct (,restimulated
R15660 T20292 T20293 nummod 6,h
R15661 T20293 T20290 appos h,restimulated
R15662 T20294 T20290 punct ),restimulated
R15663 T20295 T20298 amod Runx3,+
R15664 T20296 T20298 compound +,+
R15665 T20297 T20298 compound /,+
R15666 T20298 T20298 ROOT +,+
R15667 T20299 T20302 prep versus,/
R15668 T20300 T20301 compound Runx3,−
R15669 T20301 T20302 nsubj −,/
R15670 T20302 T20302 ROOT /,/
R15671 T20303 T20308 nummod −,cells
R15672 T20304 T20308 nummod CD8,cells
R15673 T20305 T20308 compound +,cells
R15674 T20306 T20307 compound SP,T
R15675 T20307 T20308 compound T,cells
R15676 T20308 T20309 nsubj cells,differentiated
R15677 T20309 T20302 acl differentiated,/
R15678 T20310 T20309 prep for,differentiated
R15679 T20311 T20312 nummod 6,d
R15680 T20312 T20310 pobj d,for
R15681 T20313 T20309 punct .,differentiated

GO-BP

Id Subject Object Predicate Lexical cue
T20181 159-179 http://purl.obolibrary.org/obo/GO_0030154 denotes cells differentiated
T20182 314-334 http://purl.obolibrary.org/obo/GO_0030154 denotes cells differentiated
T20183 502-522 http://purl.obolibrary.org/obo/GO_0030154 denotes cells differentiated

GO-MF

Id Subject Object Predicate Lexical cue
T20465 429-433 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T20467 159-164 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20468 314-319 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20469 502-507 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20175 0-531 Sentence denotes Key role for Runx3 in effector CTL differentiation. (A) Western analysis of Runx3, Eomes, T-bet, and perforin expression in Runx3+/+ versus Runx3−/− CD8+ SP T cells differentiated for 6 d. β-Actin was used as a loading control. (B) Northern blot analysis of Prf1 mRNA expression in Runx3+/+ versus Runx3−/− CD8+ T cells differentiated for 6 d. β–Actin was used as a loading control. (C) Expression of granzyme B, IFN-γ, TNF, and IL-2 by resting or restimulated (6 h) Runx3+/+ versus Runx3−/− CD8+ SP T cells differentiated for 6 d.
T93 0-531 Sentence denotes Key role for Runx3 in effector CTL differentiation. (A) Western analysis of Runx3, Eomes, T-bet, and perforin expression in Runx3+/+ versus Runx3−/− CD8+ SP T cells differentiated for 6 d. β-Actin was used as a loading control. (B) Northern blot analysis of Prf1 mRNA expression in Runx3+/+ versus Runx3−/− CD8+ T cells differentiated for 6 d. β–Actin was used as a loading control. (C) Expression of granzyme B, IFN-γ, TNF, and IL-2 by resting or restimulated (6 h) Runx3+/+ versus Runx3−/− CD8+ SP T cells differentiated for 6 d.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T20666 13-18 Protein denotes Runx3
T20667 76-81 Protein denotes Runx3
T20668 83-88 Protein denotes Eomes
T20669 90-95 Protein denotes T-bet
T20670 101-109 Protein denotes perforin
T20671 110-120 Gene_expression denotes expression true
T20672 110-120 Gene_expression denotes expression true
T20673 110-120 Gene_expression denotes expression true
T20674 110-120 Gene_expression denotes expression true
T20675 124-129 Protein denotes Runx3
T20676 140-145 Protein denotes Runx3
T20677 149-152 Protein denotes CD8
T20678 189-196 Protein denotes β-Actin
T20679 258-262 Protein denotes Prf1
T20680 263-278 Transcription denotes mRNA expression true
T20681 282-287 Protein denotes Runx3
T20682 298-303 Protein denotes Runx3
T20683 307-310 Protein denotes CD8
T20684 344-351 Protein denotes β–Actin
T20685 387-397 Gene_expression denotes Expression true
T20686 387-397 Gene_expression denotes Expression true
T20687 387-397 Gene_expression denotes Expression true
T20688 387-397 Gene_expression denotes Expression true
T20689 401-411 Protein denotes granzyme B
T20690 413-418 Protein denotes IFN-γ
T20691 420-423 Protein denotes TNF
T20692 429-433 Protein denotes IL-2
T20693 467-472 Protein denotes Runx3
T20694 483-488 Protein denotes Runx3
T20695 492-495 Protein denotes CD8
R15854 T20667 T20673 themeOf Runx3,expression
R15855 T20668 T20674 themeOf Eomes,expression
R15856 T20669 T20671 themeOf T-bet,expression
R15857 T20670 T20672 themeOf perforin,expression
R15858 T20679 T20680 themeOf Prf1,mRNA expression
R15859 T20689 T20685 themeOf granzyme B,Expression
R15860 T20690 T20686 themeOf IFN-γ,Expression
R15861 T20691 T20688 themeOf TNF,Expression
R15862 T20692 T20687 themeOf IL-2,Expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20707 13-18 Protein denotes Runx3
T20708 76-81 Protein denotes Runx3
T20709 101-109 Protein denotes perforin
T20710 124-129 Protein denotes Runx3
T20711 149-152 Protein denotes CD8
T20712 154-158 Protein denotes SP T
T20713 110-120 Gene_expression denotes expression
T20714 110-120 Gene_expression denotes expression
T20715 191-196 Protein denotes Actin
T20716 258-267 Protein denotes Prf1 mRNA
T20717 282-287 Protein denotes Runx3
T20718 307-310 Protein denotes CD8
T20719 268-278 Gene_expression denotes expression
T20720 346-351 Protein denotes Actin
T20721 401-411 Protein denotes granzyme B
T20722 413-418 Protein denotes IFN-γ
T20723 420-423 Protein denotes TNF
T20724 429-433 Protein denotes IL-2
T20725 467-472 Protein denotes Runx3
T20726 492-495 Protein denotes CD8
T20727 497-501 Protein denotes SP T
T20728 387-397 Gene_expression denotes Expression
T20729 387-397 Gene_expression denotes Expression
T20730 387-397 Gene_expression denotes Expression
T20731 387-397 Gene_expression denotes Expression
R15867 T20708 T20713 themeOf Runx3,expression
R15868 T20709 T20714 themeOf perforin,expression
R15869 T20716 T20719 themeOf Prf1 mRNA,expression
R15870 T20721 T20728 themeOf granzyme B,Expression
R15871 T20722 T20729 themeOf IFN-γ,Expression
R15872 T20723 T20730 themeOf TNF,Expression
R15873 T20724 T20731 themeOf IL-2,Expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T20134 13-18 Protein denotes Runx3
T20135 76-81 Protein denotes Runx3
T20136 83-88 Protein denotes Eomes
T20137 90-95 Protein denotes T-bet
T20138 101-109 Protein denotes perforin
T20139 110-120 Gene_expression denotes expression true
T20140 110-120 Gene_expression denotes expression true
T20141 110-120 Gene_expression denotes expression true
T20142 110-120 Gene_expression denotes expression true
T20143 124-129 Protein denotes Runx3
T20144 140-145 Protein denotes Runx3
T20145 149-152 Protein denotes CD8
T20146 189-196 Protein denotes β-Actin
T20147 258-262 Protein denotes Prf1
T20148 263-278 Transcription denotes mRNA expression true
T20149 282-287 Protein denotes Runx3
T20150 298-303 Protein denotes Runx3
T20151 307-310 Protein denotes CD8
T20152 344-351 Protein denotes β–Actin
T20153 387-397 Gene_expression denotes Expression true
T20154 387-397 Gene_expression denotes Expression true
T20155 387-397 Gene_expression denotes Expression true
T20156 387-397 Gene_expression denotes Expression true
T20157 401-411 Protein denotes granzyme B
T20158 413-418 Protein denotes IFN-γ
T20159 420-423 Protein denotes TNF
T20160 429-433 Protein denotes IL-2
T20161 467-472 Protein denotes Runx3
T20162 483-488 Protein denotes Runx3
T20163 492-495 Protein denotes CD8
R15540 T20135 T20141 themeOf Runx3,expression
R15541 T20136 T20142 themeOf Eomes,expression
R15542 T20137 T20139 themeOf T-bet,expression
R15543 T20138 T20140 themeOf perforin,expression
R15544 T20147 T20148 themeOf Prf1,mRNA expression
R15545 T20157 T20153 themeOf granzyme B,Expression
R15546 T20158 T20154 themeOf IFN-γ,Expression
R15547 T20159 T20156 themeOf TNF,Expression
R15548 T20160 T20155 themeOf IL-2,Expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20425 13-18 Q13761 denotes Runx3
T20426 76-81 Q13761 denotes Runx3
T20427 83-88 O95936 denotes Eomes
T20428 90-95 Q9UL17 denotes T-bet
T20429 101-109 P14222 denotes perforin
T20430 124-129 Q13761 denotes Runx3
T20431 140-145 Q13761 denotes Runx3
T20432 149-152 P01732 denotes CD8
T20433 149-152 P10966 denotes CD8
T20434 189-196 P60709 denotes β-Actin
T20435 258-262 P14222 denotes Prf1
T20436 282-287 Q13761 denotes Runx3
T20437 298-303 Q13761 denotes Runx3
T20438 307-310 P10966 denotes CD8
T20439 307-310 P01732 denotes CD8
T20440 344-351 P60709 denotes β–Actin
T20441 401-411 P10144 denotes granzyme B
T20442 413-418 P01579 denotes IFN-γ
T20443 420-423 P01375 denotes TNF
T20444 429-433 P60568 denotes IL-2
T20445 467-472 Q13761 denotes Runx3
T20446 483-488 Q13761 denotes Runx3
T20447 492-495 P01732 denotes CD8
T20448 492-495 P10966 denotes CD8

test2

Id Subject Object Predicate Lexical cue Speculation
T20100 13-18 Protein denotes Runx3 true
T20101 76-81 Protein denotes Runx3 true
T20102 83-88 Protein denotes Eomes true
T20103 90-95 Protein denotes T-bet true
T20104 101-109 Protein denotes perforin true
T20105 110-120 Gene_expression denotes expression true
T20106 124-129 Protein denotes Runx3 true
T20107 140-145 Protein denotes Runx3 true
T20108 149-152 Protein denotes CD8 true
T20109 189-196 Protein denotes β-Actin true
T20110 258-262 Protein denotes Prf1 true
T20111 263-278 Transcription denotes mRNA expression
T20112 282-287 Protein denotes Runx3
T20113 298-303 Protein denotes Runx3
T20114 307-310 Protein denotes CD8
T20115 344-351 Protein denotes β–Actin
T20116 387-397 Gene_expression denotes Expression
T20117 401-411 Protein denotes granzyme B
T20118 413-418 Protein denotes IFN-γ
T20119 420-423 Protein denotes TNF
T20120 429-433 Protein denotes IL-2
T20121 467-472 Protein denotes Runx3
T20122 483-488 Protein denotes Runx3
T20123 492-495 Protein denotes CD8
R15528 T20101 T20105 themeOf Runx3,expression
R15529 T20102 T20105 themeOf Eomes,expression
R15530 T20103 T20105 themeOf T-bet,expression
R15531 T20104 T20105 themeOf perforin,expression
R15532 T20110 T20111 themeOf Prf1,mRNA expression
R15533 T20117 T20116 themeOf granzyme B,Expression
R15534 T20118 T20116 themeOf IFN-γ,Expression
R15535 T20119 T20116 themeOf TNF,Expression
R15536 T20120 T20116 themeOf IL-2,Expression