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PMC:2626671 / 14912-15047 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9158 0-11 RB denotes Furthermore
T9159 11-12 -COMMA- denotes ,
T9160 13-18 NN denotes Runx3
T9161 19-22 VB denotes was
T9162 23-31 VB denotes required
T9163 32-35 IN denotes for
T9164 36-43 JJ denotes maximal
T9165 44-54 NN denotes production
T9166 55-57 IN denotes of
T9167 58-63 NN denotes IFN-γ
T9168 63-64 -COMMA- denotes ,
T9169 65-68 CC denotes but
T9170 69-72 RB denotes not
T9171 73-76 NN denotes TNF
T9172 77-79 CC denotes or
T9173 80-84 NN denotes IL-2
T9174 84-85 -COMMA- denotes ,
T9175 86-88 IN denotes by
T9176 89-93 JJ denotes CD8+
T9177 94-95 NN denotes T
T9178 96-101 NN denotes cells
T9179 102-114 VB denotes restimulated
T9180 115-117 IN denotes at
T9181 118-121 NN denotes day
T9182 122-123 CD denotes 6
T9183 124-125 -LRB- denotes (
T9184 125-129 NN denotes Fig.
T9185 130-131 CD denotes 3
T9186 132-133 NN denotes C
T9187 133-134 -RRB- denotes )
R7316 T9160 T9161 arg1Of Runx3,was
R7317 T9160 T9162 arg2Of Runx3,required
R7318 T9162 T9158 arg1Of required,Furthermore
R7319 T9162 T9159 arg1Of required,","
R7320 T9162 T9161 arg2Of required,was
R7321 T9162 T9163 arg1Of required,for
R7322 T9162 T9174 arg1Of required,","
R7323 T9162 T9175 arg1Of required,by
R7325 T9165 T9163 arg2Of production,for
R7326 T9165 T9164 arg1Of production,maximal
R7327 T9165 T9166 arg1Of production,of
R7329 T9167 T9169 arg1Of IFN-γ,but
R7330 T9169 T9166 arg2Of but,of
R7331 T9169 T9168 arg1Of but,","
R7332 T9169 T9170 arg1Of but,not
R7333 T9171 T9172 arg1Of TNF,or
R7335 T9172 T9169 arg2Of or,but
R7336 T9173 T9172 arg2Of IL-2,or
R7339 T9178 T9175 arg2Of cells,by
R7340 T9178 T9176 arg1Of cells,CD8+
R7341 T9178 T9177 arg1Of cells,T
R7342 T9178 T9179 arg2Of cells,restimulated
R7343 T9179 T9180 arg1Of restimulated,at
R7345 T9181 T9180 arg2Of day,at
R7346 T9181 T9182 arg1Of day,6
R7347 T9181 T9183 arg1Of day,(
R7351 T9186 T9183 arg2Of C,(
R7352 T9186 T9184 arg1Of C,Fig.
R7353 T9186 T9185 arg1Of C,3
R7354 T9187 T9183 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8201 0-11 RB denotes Furthermore
T8202 11-12 , denotes ,
T8203 13-18 NNP denotes Runx3
T8204 19-22 VBD denotes was
T8205 23-31 VBN denotes required
T8206 32-35 IN denotes for
T8207 36-43 JJ denotes maximal
T8208 44-54 NN denotes production
T8209 55-57 IN denotes of
T8210 58-63 NNP denotes IFN-γ
T8211 63-64 , denotes ,
T8212 65-68 CC denotes but
T8213 69-72 RB denotes not
T8214 73-76 NNP denotes TNF
T8215 77-79 CC denotes or
T8216 80-84 NNP denotes IL-2
T8217 84-85 , denotes ,
T8218 86-88 IN denotes by
T8219 89-92 CD denotes CD8
T8220 92-93 CD denotes +
T8221 94-95 NNP denotes T
T8222 96-101 NNS denotes cells
T8223 102-114 VBD denotes restimulated
T8224 115-117 IN denotes at
T8225 118-121 NN denotes day
T8226 122-123 CD denotes 6
T8227 124-125 -LRB- denotes (
T8228 125-129 NN denotes Fig.
T8229 130-131 CD denotes 3
T8230 132-133 NNP denotes C
T8231 133-134 -RRB- denotes )
T8232 134-135 . denotes .
R6378 T8201 T8205 advmod Furthermore,required
R6379 T8202 T8205 punct ",",required
R6380 T8203 T8205 nsubjpass Runx3,required
R6381 T8204 T8205 auxpass was,required
R6382 T8205 T8205 ROOT required,required
R6383 T8206 T8205 prep for,required
R6384 T8207 T8208 amod maximal,production
R6385 T8208 T8206 pobj production,for
R6386 T8209 T8208 prep of,production
R6387 T8210 T8209 pobj IFN-γ,of
R6388 T8211 T8205 punct ",",required
R6389 T8212 T8205 cc but,required
R6390 T8213 T8214 neg not,TNF
R6391 T8214 T8214 ROOT TNF,TNF
R6392 T8215 T8214 cc or,TNF
R6393 T8216 T8214 conj IL-2,TNF
R6394 T8217 T8214 punct ",",TNF
R6395 T8218 T8223 agent by,restimulated
R6396 T8219 T8222 nummod CD8,cells
R6397 T8220 T8222 nummod +,cells
R6398 T8221 T8222 compound T,cells
R6399 T8222 T8218 pobj cells,by
R6400 T8223 T8205 conj restimulated,required
R6401 T8224 T8223 prep at,restimulated
R6402 T8225 T8224 pobj day,at
R6403 T8226 T8225 nummod 6,day
R6404 T8227 T8228 punct (,Fig.
R6405 T8228 T8223 parataxis Fig.,restimulated
R6406 T8229 T8228 nummod 3,Fig.
R6407 T8230 T8228 appos C,Fig.
R6408 T8231 T8228 punct ),Fig.
R6409 T8232 T8205 punct .,required

GO-MF

Id Subject Object Predicate Lexical cue
T10031 80-84 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

GO-CC

Id Subject Object Predicate Lexical cue
T10044 96-101 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7968 0-135 Sentence denotes Furthermore, Runx3 was required for maximal production of IFN-γ, but not TNF or IL-2, by CD8+ T cells restimulated at day 6 (Fig. 3 C).
T91 0-135 Sentence denotes Furthermore, Runx3 was required for maximal production of IFN-γ, but not TNF or IL-2, by CD8+ T cells restimulated at day 6 (Fig. 3 C).

events-check-again

Id Subject Object Predicate Lexical cue
T11059 13-18 Protein denotes Runx3
T11060 23-31 Positive_regulation denotes required
T11061 23-31 Positive_regulation denotes required
T11062 23-31 Positive_regulation denotes required
T11063 44-54 Gene_expression denotes production
T11064 44-54 Gene_expression denotes production
T11065 44-54 Gene_expression denotes production
T11066 58-63 Protein denotes IFN-γ
T11067 73-76 Protein denotes TNF
T11068 80-84 Protein denotes IL-2
T11069 89-92 Protein denotes CD8
R8698 T11059 T11061 causeOf Runx3,required
R8699 T11059 T11060 causeOf Runx3,required
R8700 T11059 T11062 causeOf Runx3,required
R8702 T11063 T11062 themeOf production,required
R8703 T11064 T11060 themeOf production,required
R8704 T11065 T11061 themeOf production,required
R8705 T11066 T11065 themeOf IFN-γ,production
R8706 T11067 T11064 themeOf TNF,production
R8707 T11068 T11063 themeOf IL-2,production

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11267 13-18 Protein denotes Runx3
T11268 58-63 Protein denotes IFN-γ
T11269 73-76 Protein denotes TNF
T11270 80-84 Protein denotes IL-2
T11271 89-93 Protein denotes CD8+
T11272 44-54 Gene_expression denotes production
T11273 44-54 Gene_expression denotes production
T11274 44-54 Gene_expression denotes production
T11275 23-31 Positive_regulation denotes required
T11276 23-31 Positive_regulation denotes required
T11277 23-31 Positive_regulation denotes required
R8817 T11267 T11275 causeOf Runx3,required
R8818 T11267 T11276 causeOf Runx3,required
R8819 T11267 T11277 causeOf Runx3,required
R8820 T11268 T11272 themeOf IFN-γ,production
R8821 T11269 T11273 themeOf TNF,production
R8822 T11270 T11274 themeOf IL-2,production
R8823 T11272 T11275 themeOf production,required
R8824 T11273 T11276 themeOf production,required
R8826 T11274 T11277 themeOf production,required

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7782 13-18 Protein denotes Runx3
T7783 23-31 Positive_regulation denotes required
T7784 23-31 Positive_regulation denotes required
T7785 23-31 Positive_regulation denotes required
T7786 44-54 Gene_expression denotes production
T7787 44-54 Gene_expression denotes production
T7788 44-54 Gene_expression denotes production
T7789 58-63 Protein denotes IFN-γ
T7790 73-76 Protein denotes TNF
T7791 80-84 Protein denotes IL-2
T7792 89-92 Protein denotes CD8
R6037 T7782 T7783 causeOf Runx3,required
R6038 T7782 T7785 causeOf Runx3,required
R6039 T7786 T7785 themeOf production,required
R6041 T7788 T7784 themeOf production,required
R6042 T7789 T7788 themeOf IFN-γ,production
R6043 T7790 T7787 themeOf TNF,production
R6044 T7791 T7786 themeOf IL-2,production
R6036 T7782 T7784 causeOf Runx3,required
R6040 T7787 T7783 themeOf production,required

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9903 13-18 Q13761 denotes Runx3
T9904 58-63 P01579 denotes IFN-γ
T9905 73-76 P01375 denotes TNF
T9906 80-84 P60568 denotes IL-2
T9907 89-92 P01732 denotes CD8
T9908 89-92 P10966 denotes CD8

test2

Id Subject Object Predicate Lexical cue Speculation
T7614 13-18 Protein denotes Runx3
T7615 23-31 Positive_regulation denotes required
T7616 44-54 Gene_expression denotes production
T7617 58-63 Protein denotes IFN-γ
T7618 73-76 Protein denotes TNF
T7619 80-84 Protein denotes IL-2 true
T7620 89-92 Protein denotes CD8
R5942 T7614 T7615 causeOf Runx3,required
R5943 T7616 T7615 themeOf production,required
R5944 T7617 T7616 themeOf IFN-γ,production
R5945 T7618 T7616 themeOf TNF,production
R5946 T7619 T7616 themeOf IL-2,production