PMC:2427286 / 7676-8454 JSONTXT

{"project":"2_test","denotations":[{"id":"18374297-1644282-2052356","span":{"begin":38,"end":40},"obj":"1644282"},{"id":"18374297-6018555-2052357","span":{"begin":97,"end":99},"obj":"6018555"},{"id":"18374297-11264419-2052358","span":{"begin":199,"end":201},"obj":"11264419"},{"id":"18374297-10331250-2052359","span":{"begin":225,"end":227},"obj":"10331250"},{"id":"18374297-11898125-2052360","span":{"begin":441,"end":443},"obj":"11898125"},{"id":"18374297-8647407-2052361","span":{"begin":498,"end":500},"obj":"8647407"},{"id":"18374297-16489223-2052362","span":{"begin":776,"end":778},"obj":"16489223"}],"text":"Analysis of molecular variance (AMOVA)24, population pairwise genetic distances, and Mantel tests25 were performed with the package Arlequin 3.11.26 Admixture analyses were carried out with Admix2_0.27 Median-joining networks28 were calculated with Network 4.2 (Fluxus-Engineering). Such networks were highly reticulated, and we reduced reticulations by first weighting the loci according to the inverse of their variance in the dataset used29 and subsequently constructing a reduced-median network30 to form the input of the median-joining network. Male effective population sizes were calculated with BATWING31 with a demographic model that assumed a period of constant size followed by exponential growth; prior values were set for other parameters as described previously.20"}