PMC:2222968 / 783-1004
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T225 | 0-4 | DT | denotes | This |
| T226 | 5-15 | JJ | denotes | inhibitory |
| T227 | 16-25 | NN | denotes | mechanism |
| T228 | 26-29 | VB | denotes | was |
| T229 | 30-34 | RB | denotes | also |
| T230 | 35-44 | VB | denotes | confirmed |
| T231 | 45-47 | IN | denotes | in |
| T232 | 48-51 | NN | denotes | Th2 |
| T233 | 52-57 | NN | denotes | cells |
| T234 | 58-61 | CC | denotes | and |
| T235 | 62-64 | IN | denotes | in |
| T236 | 65-66 | NN | denotes | T |
| T237 | 67-72 | NN | denotes | cells |
| T238 | 73-75 | IN | denotes | of |
| T239 | 76-86 | JJ | denotes | transgenic |
| T240 | 87-91 | NN | denotes | mice |
| T241 | 92-106 | VB | denotes | overexpressing |
| T242 | 107-113 | NN | denotes | GATA-3 |
| T243 | 114-116 | IN | denotes | in |
| T244 | 117-118 | NN | denotes | T |
| T245 | 119-124 | NN | denotes | cells |
| T246 | 124-125 | -COMMA- | denotes | , |
| T247 | 126-131 | WDT | denotes | which |
| T248 | 132-135 | VB | denotes | are |
| T249 | 136-141 | VB | denotes | shown |
| T250 | 142-144 | TO | denotes | to |
| T251 | 145-147 | VB | denotes | be |
| T252 | 148-157 | JJ | denotes | deficient |
| T253 | 158-160 | IN | denotes | in |
| T254 | 161-173 | VB | denotes | transforming |
| T255 | 174-180 | NN | denotes | growth |
| T256 | 181-187 | NN | denotes | factor |
| T257 | 188-189 | -LRB- | denotes | ( |
| T258 | 189-192 | NN | denotes | TGF |
| T259 | 192-193 | -RRB- | denotes | ) |
| T260 | 193-204 | JJ | denotes | -β–mediated |
| T261 | 205-210 | NN | denotes | FOXP3 |
| T262 | 211-220 | NN | denotes | induction |
| R167 | T227 | T225 | arg1Of | mechanism,This |
| R168 | T227 | T226 | arg1Of | mechanism,inhibitory |
| R169 | T227 | T228 | arg1Of | mechanism,was |
| R170 | T227 | T230 | arg2Of | mechanism,confirmed |
| R171 | T230 | T228 | arg2Of | confirmed,was |
| R172 | T230 | T229 | arg1Of | confirmed,also |
| R173 | T230 | T231 | arg1Of | confirmed,in |
| R174 | T230 | T235 | arg1Of | confirmed,in |
| R175 | T231 | T234 | arg1Of | in,and |
| R176 | T233 | T231 | arg2Of | cells,in |
| R177 | T233 | T232 | arg1Of | cells,Th2 |
| R178 | T235 | T234 | arg2Of | in,and |
| R179 | T237 | T235 | arg2Of | cells,in |
| R180 | T237 | T236 | arg1Of | cells,T |
| R181 | T237 | T238 | arg1Of | cells,of |
| R182 | T240 | T238 | arg2Of | mice,of |
| R183 | T240 | T239 | arg1Of | mice,transgenic |
| R184 | T240 | T241 | arg1Of | mice,overexpressing |
| R185 | T240 | T246 | arg1Of | mice,"," |
| R186 | T240 | T247 | arg1Of | mice,which |
| R187 | T240 | T248 | arg1Of | mice,are |
| R188 | T240 | T249 | arg2Of | mice,shown |
| R189 | T240 | T251 | arg1Of | mice,be |
| R190 | T240 | T252 | arg1Of | mice,deficient |
| R191 | T241 | T243 | arg1Of | overexpressing,in |
| R192 | T242 | T241 | arg2Of | GATA-3,overexpressing |
| R193 | T245 | T243 | arg2Of | cells,in |
| R194 | T245 | T244 | arg1Of | cells,T |
| R195 | T249 | T248 | arg2Of | shown,are |
| R196 | T251 | T249 | arg3Of | be,shown |
| R197 | T251 | T250 | arg1Of | be,to |
| R198 | T252 | T251 | arg2Of | deficient,be |
| R199 | T252 | T253 | arg1Of | deficient,in |
| R200 | T254 | T253 | arg2Of | transforming,in |
| R201 | T258 | T257 | arg2Of | TGF,( |
| R202 | T259 | T257 | arg3Of | ),( |
| R203 | T262 | T254 | arg2Of | induction,transforming |
| R204 | T262 | T255 | arg1Of | induction,growth |
| R205 | T262 | T256 | arg1Of | induction,factor |
| R206 | T262 | T257 | arg1Of | induction,( |
| R207 | T262 | T260 | arg1Of | induction,-β–mediated |
| R208 | T262 | T261 | arg1Of | induction,FOXP3 |
bionlp-st-ge-2016-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T338 | 148-157 | Antecedent | denotes | deficient |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T484 | 0-4 | DT | denotes | This |
| T485 | 5-15 | JJ | denotes | inhibitory |
| T486 | 16-25 | NN | denotes | mechanism |
| T487 | 26-29 | VBD | denotes | was |
| T488 | 30-34 | RB | denotes | also |
| T489 | 35-44 | VBN | denotes | confirmed |
| T490 | 45-47 | IN | denotes | in |
| T491 | 48-51 | JJ | denotes | Th2 |
| T492 | 52-57 | NNS | denotes | cells |
| T493 | 58-61 | CC | denotes | and |
| T494 | 62-64 | IN | denotes | in |
| T495 | 65-66 | NNP | denotes | T |
| T496 | 67-72 | NNS | denotes | cells |
| T497 | 73-75 | IN | denotes | of |
| T498 | 76-86 | JJ | denotes | transgenic |
| T499 | 87-91 | NNS | denotes | mice |
| T500 | 92-106 | VBG | denotes | overexpressing |
| T501 | 107-113 | NN | denotes | GATA-3 |
| T502 | 114-116 | IN | denotes | in |
| T503 | 117-118 | NNP | denotes | T |
| T504 | 119-124 | NNS | denotes | cells |
| T505 | 124-125 | , | denotes | , |
| T506 | 126-131 | WDT | denotes | which |
| T507 | 132-135 | VBP | denotes | are |
| T508 | 136-141 | VBN | denotes | shown |
| T509 | 142-144 | TO | denotes | to |
| T510 | 145-147 | VB | denotes | be |
| T511 | 148-157 | JJ | denotes | deficient |
| T512 | 158-160 | IN | denotes | in |
| T513 | 161-173 | VBG | denotes | transforming |
| T514 | 174-180 | NN | denotes | growth |
| T515 | 181-187 | NN | denotes | factor |
| T516 | 188-189 | -LRB- | denotes | ( |
| T517 | 189-192 | NNP | denotes | TGF |
| T518 | 192-193 | -RRB- | denotes | ) |
| T519 | 193-194 | : | denotes | - |
| T520 | 194-195 | NN | denotes | β |
| T521 | 196-204 | VBD | denotes | mediated |
| T522 | 205-210 | CD | denotes | FOXP3 |
| T523 | 211-220 | NN | denotes | induction |
| T524 | 220-221 | . | denotes | . |
| R404 | T484 | T486 | det | This,mechanism |
| R405 | T485 | T486 | amod | inhibitory,mechanism |
| R406 | T486 | T489 | nsubjpass | mechanism,confirmed |
| R407 | T487 | T489 | auxpass | was,confirmed |
| R408 | T488 | T489 | advmod | also,confirmed |
| R409 | T489 | T489 | ROOT | confirmed,confirmed |
| R410 | T490 | T489 | prep | in,confirmed |
| R411 | T491 | T492 | amod | Th2,cells |
| R412 | T492 | T490 | pobj | cells,in |
| R413 | T493 | T490 | cc | and,in |
| R414 | T494 | T490 | conj | in,in |
| R415 | T495 | T496 | compound | T,cells |
| R416 | T496 | T494 | pobj | cells,in |
| R417 | T497 | T496 | prep | of,cells |
| R418 | T498 | T499 | amod | transgenic,mice |
| R419 | T499 | T497 | pobj | mice,of |
| R420 | T500 | T489 | advcl | overexpressing,confirmed |
| R421 | T501 | T500 | dobj | GATA-3,overexpressing |
| R422 | T502 | T500 | prep | in,overexpressing |
| R423 | T503 | T504 | compound | T,cells |
| R424 | T504 | T502 | pobj | cells,in |
| R425 | T505 | T489 | punct | ",",confirmed |
| R426 | T506 | T508 | nsubjpass | which,shown |
| R427 | T507 | T508 | auxpass | are,shown |
| R428 | T508 | T489 | advcl | shown,confirmed |
| R429 | T509 | T510 | aux | to,be |
| R430 | T510 | T508 | xcomp | be,shown |
| R431 | T511 | T510 | acomp | deficient,be |
| R432 | T512 | T511 | prep | in,deficient |
| R433 | T513 | T512 | pcomp | transforming,in |
| R434 | T514 | T515 | compound | growth,factor |
| R435 | T515 | T513 | dobj | factor,transforming |
| R436 | T516 | T517 | punct | (,TGF |
| R437 | T517 | T515 | appos | TGF,factor |
| R438 | T518 | T517 | punct | ),TGF |
| R439 | T519 | T515 | punct | -,factor |
| R440 | T520 | T515 | appos | β,factor |
| R441 | T521 | T489 | conj | mediated,confirmed |
| R442 | T522 | T523 | nummod | FOXP3,induction |
| R443 | T523 | T521 | dobj | induction,mediated |
| R444 | T524 | T489 | punct | .,confirmed |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 174-180 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T636 | 52-57 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T637 | 67-72 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T638 | 119-124 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 0-221 | Sentence | denotes | This inhibitory mechanism was also confirmed in Th2 cells and in T cells of transgenic mice overexpressing GATA-3 in T cells, which are shown to be deficient in transforming growth factor (TGF)-β–mediated FOXP3 induction. |
| T7 | 0-221 | Sentence | denotes | This inhibitory mechanism was also confirmed in Th2 cells and in T cells of transgenic mice overexpressing GATA-3 in T cells, which are shown to be deficient in transforming growth factor (TGF)-β–mediated FOXP3 induction. |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T768 | 161-195 | Protein | denotes | transforming growth factor (TGF)-β |
| T769 | 196-204 | Positive_regulation | denotes | mediated |
| T770 | 205-210 | Protein | denotes | FOXP3 |
| T771 | 211-220 | Positive_regulation | denotes | induction |
| T765 | 92-106 | Gene_expression | denotes | overexpressing |
| T766 | 107-113 | Protein | denotes | GATA-3 |
| T767 | 148-157 | Negative_regulation | denotes | deficient |
| R599 | T768 | T769 | causeOf | transforming growth factor (TGF)-β,mediated |
| R600 | T769 | T767 | themeOf | mediated,deficient |
| R601 | T770 | T771 | themeOf | FOXP3,induction |
| R602 | T771 | T769 | themeOf | induction,mediated |
| R662 | T766 | T765 | themeOf | GATA-3,overexpressing |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T657 | 107-113 | Protein | denotes | GATA-3 |
| T658 | 205-210 | Protein | denotes | FOXP3 |
| T659 | 92-106 | Gene_expression | denotes | overexpressing |
| T660 | 211-220 | Positive_regulation | denotes | induction |
| T661 | 148-157 | Negative_regulation | denotes | deficient |
| R551 | T657 | T659 | themeOf | GATA-3,overexpressing |
| R552 | T658 | T660 | themeOf | FOXP3,induction |
| R553 | T660 | T661 | themeOf | induction,deficient |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T105 | 107-113 | Protein | denotes | GATA-3 |
| T106 | 161-195 | Protein | denotes | transforming growth factor (TGF)-β |
| T78 | 211-220 | Positive_regulation | denotes | induction |
| T88 | 92-106 | Gene_expression | denotes | overexpressing |
| T89 | 148-157 | Negative_regulation | denotes | deficient |
| T90 | 196-204 | Positive_regulation | denotes | mediated |
| T92 | 205-210 | Protein | denotes | FOXP3 |
| R624 | T90 | T89 | themeOf | mediated,deficient |
| R625 | T92 | T78 | themeOf | FOXP3,induction |
| R42 | T105 | T88 | themeOf | GATA-3,overexpressing |
| R43 | T106 | T90 | causeOf | transforming growth factor (TGF)-β,mediated |
| R618 | T78 | T90 | themeOf | induction,mediated |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T345 | 107-113 | P23771 | denotes | GATA-3 |
| T346 | 205-210 | Q9BZS1 | denotes | FOXP3 |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T42 | 92-106 | Gene_expression | denotes | overexpressing |
| T43 | 107-113 | Protein | denotes | GATA-3 |
| T44 | 148-157 | Negative_regulation | denotes | deficient |
| T45 | 161-195 | Protein | denotes | transforming growth factor (TGF)-β |
| T46 | 196-204 | Positive_regulation | denotes | mediated |
| T47 | 205-210 | Protein | denotes | FOXP3 |
| T48 | 211-220 | Positive_regulation | denotes | induction |
| R30 | T43 | T42 | themeOf | GATA-3,overexpressing |
| R31 | T47 | T48 | themeOf | FOXP3,induction |
| R32 | T48 | T46 | themeOf | induction,mediated |