PMC:2222968 / 45716-45980
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T22977 | 0-4 | JJ | denotes | CD4+ |
T22978 | 5-6 | NN | denotes | T |
T22979 | 7-12 | NN | denotes | cells |
T22980 | 13-17 | VB | denotes | were |
T22981 | 18-28 | VB | denotes | stimulated |
T22982 | 29-33 | IN | denotes | with |
T22983 | 34-37 | NN | denotes | PMA |
T22984 | 38-41 | CC | denotes | and |
T22985 | 42-51 | NN | denotes | ionomycin |
T22986 | 52-55 | IN | denotes | for |
T22987 | 56-57 | CD | denotes | 2 |
T22988 | 58-59 | NN | denotes | h |
T22989 | 60-62 | IN | denotes | at |
T22990 | 63-68 | NNP | denotes | 37°C. |
T22991 | 69-72 | DT | denotes | The |
T22992 | 73-78 | NN | denotes | cells |
T22993 | 79-83 | VB | denotes | were |
T22994 | 84-92 | VB | denotes | pelleted |
T22995 | 92-93 | -COMMA- | denotes | , |
T22996 | 94-105 | VB | denotes | resuspended |
T22997 | 106-108 | IN | denotes | in |
T22998 | 109-115 | NN | denotes | buffer |
T22999 | 116-117 | NN | denotes | C |
T23000 | 118-119 | -LRB- | denotes | ( |
T23001 | 119-121 | CD | denotes | 20 |
T23002 | 122-124 | NN | denotes | mM |
T23003 | 125-130 | NN | denotes | HEPES |
T23004 | 131-132 | -LRB- | denotes | [ |
T23005 | 132-134 | NN | denotes | pH |
T23006 | 135-138 | CD | denotes | 7.9 |
T23007 | 138-139 | -RRB- | denotes | ] |
T23008 | 139-140 | -COMMA- | denotes | , |
T23009 | 141-144 | CD | denotes | 420 |
T23010 | 145-147 | NN | denotes | mM |
T23011 | 148-152 | NN | denotes | NaCl |
T23012 | 152-153 | -COMMA- | denotes | , |
T23013 | 154-157 | CD | denotes | 1.5 |
T23014 | 158-160 | NN | denotes | mM |
T23015 | 161-166 | NN | denotes | MgCl2 |
T23016 | 166-167 | -COMMA- | denotes | , |
T23017 | 168-171 | CD | denotes | 0.2 |
T23018 | 172-174 | NN | denotes | mM |
T23019 | 175-179 | NN | denotes | EDTA |
T23020 | 179-180 | -COMMA- | denotes | , |
T23021 | 181-182 | CD | denotes | 1 |
T23022 | 183-185 | NN | denotes | mM |
T23023 | 186-189 | NN | denotes | DTT |
T23024 | 189-190 | -COMMA- | denotes | , |
T23025 | 191-199 | NN | denotes | protease |
T23026 | 200-210 | NN | denotes | inhibitors |
T23027 | 211-212 | -LRB- | denotes | [ |
T23028 | 212-217 | NNP | denotes | Sigma |
T23029 | 217-218 | -RRB- | denotes | ] |
T23030 | 218-221 | CC | denotes | . a |
T23031 | 221-224 | CD | denotes | nd |
T23032 | 224-225 | NN | denotes | 0 |
T23033 | 225-230 | NN | denotes | .1% N |
T23034 | 230-231 | -RRB- | denotes | P |
T23035 | 231-234 | CC | denotes | -40 |
T23036 | 234-239 | VB | denotes | ) and |
T23037 | 240-242 | IN | denotes | ly |
T23038 | 242-245 | NN | denotes | sed |
T23039 | 246-249 | IN | denotes | on |
T23040 | 249-251 | CD | denotes | ic |
T23041 | 251-254 | NN | denotes | e f |
R17159 | T22979 | T22977 | arg1Of | cells,CD4+ |
R17160 | T22979 | T22978 | arg1Of | cells,T |
R17161 | T22979 | T22980 | arg1Of | cells,were |
R17162 | T22979 | T22981 | arg2Of | cells,stimulated |
R17163 | T22981 | T22980 | arg2Of | stimulated,were |
R17164 | T22981 | T22982 | arg1Of | stimulated,with |
R17165 | T22983 | T22984 | arg1Of | PMA,and |
R17166 | T22984 | T22982 | arg2Of | and,with |
R17167 | T22984 | T22986 | arg1Of | and,for |
R17168 | T22984 | T22989 | arg1Of | and,at |
R17169 | T22985 | T22984 | arg2Of | ionomycin,and |
R17170 | T22988 | T22986 | arg2Of | h,for |
R17171 | T22988 | T22987 | arg1Of | h,2 |
R17172 | T22990 | T22989 | arg2Of | 37°C.,at |
R17173 | T22992 | T22991 | arg1Of | cells,The |
R17174 | T22992 | T22993 | arg1Of | cells,were |
R17175 | T22992 | T22994 | arg2Of | cells,pelleted |
R17176 | T22992 | T22996 | arg2Of | cells,resuspended |
R17177 | T22992 | T23036 | arg2Of | cells,) and |
R17178 | T22994 | T22995 | arg1Of | pelleted,"," |
R17179 | T22995 | T23000 | arg1Of | ",",( |
R17180 | T22995 | T23035 | arg1Of | ",",-40 |
R17181 | T22996 | T22995 | arg2Of | resuspended,"," |
R17182 | T22996 | T22997 | arg1Of | resuspended,in |
R17183 | T22999 | T22997 | arg2Of | C,in |
R17184 | T22999 | T22998 | arg1Of | C,buffer |
R17185 | T23001 | T23002 | arg1Of | 20,mM |
R17186 | T23003 | T23001 | arg1Of | HEPES,20 |
R17187 | T23003 | T23004 | arg1Of | HEPES,[ |
R17188 | T23003 | T23008 | arg1Of | HEPES,"," |
R17189 | T23005 | T23004 | arg2Of | pH,[ |
R17190 | T23005 | T23006 | arg1Of | pH,7.9 |
R17191 | T23007 | T23004 | arg3Of | ],[ |
R17192 | T23008 | T23024 | arg1Of | ",","," |
R17193 | T23009 | T23010 | arg1Of | 420,mM |
R17194 | T23011 | T23009 | arg1Of | NaCl,420 |
R17195 | T23011 | T23012 | arg1Of | NaCl,"," |
R17196 | T23012 | T23016 | arg1Of | ",","," |
R17197 | T23013 | T23014 | arg1Of | 1.5,mM |
R17198 | T23015 | T23012 | arg2Of | MgCl2,"," |
R17199 | T23015 | T23013 | arg1Of | MgCl2,1.5 |
R17200 | T23016 | T23020 | arg1Of | ",","," |
R17201 | T23017 | T23018 | arg1Of | 0.2,mM |
R17202 | T23019 | T23016 | arg2Of | EDTA,"," |
R17203 | T23019 | T23017 | arg1Of | EDTA,0.2 |
R17204 | T23020 | T23008 | arg2Of | ",","," |
R17205 | T23021 | T23022 | arg1Of | 1,mM |
R17206 | T23023 | T23020 | arg2Of | DTT,"," |
R17207 | T23023 | T23021 | arg1Of | DTT,1 |
R17208 | T23024 | T23030 | arg1Of | ",",. a |
R17209 | T23026 | T23024 | arg2Of | inhibitors,"," |
R17210 | T23026 | T23025 | arg1Of | inhibitors,protease |
R17211 | T23026 | T23027 | arg1Of | inhibitors,[ |
R17212 | T23028 | T23027 | arg2Of | Sigma,[ |
R17213 | T23029 | T23027 | arg3Of | ],[ |
R17214 | T23030 | T23000 | arg2Of | . a,( |
R17215 | T23031 | T23032 | arg1Of | nd ,0 |
R17216 | T23033 | T23030 | arg2Of | .1% N,. a |
R17217 | T23033 | T23031 | arg1Of | .1% N,nd |
R17218 | T23034 | T23000 | arg3Of | P,( |
R17219 | T23035 | T22980 | modOf | -40,were |
R17220 | T23035 | T22993 | arg2Of | -40,were |
R17221 | T23036 | T23035 | arg2Of | ) and,-40 |
R17222 | T23036 | T23037 | arg1Of | ) and,ly |
R17223 | T23036 | T23039 | arg1Of | ) and,on |
R17224 | T23038 | T23037 | arg2Of | sed,ly |
R17225 | T23041 | T23039 | arg2Of | e f,on |
R17226 | T23041 | T23040 | arg1Of | e f,ic |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23195 | 0-3 | CD | denotes | CD4 |
T23196 | 3-4 | CD | denotes | + |
T23197 | 5-6 | NNP | denotes | T |
T23198 | 7-12 | NNS | denotes | cells |
T23199 | 13-17 | VBD | denotes | were |
T23200 | 18-28 | VBN | denotes | stimulated |
T23201 | 29-33 | IN | denotes | with |
T23202 | 34-37 | NNP | denotes | PMA |
T23203 | 38-41 | CC | denotes | and |
T23204 | 42-51 | NN | denotes | ionomycin |
T23205 | 52-55 | IN | denotes | for |
T23206 | 56-57 | CD | denotes | 2 |
T23207 | 58-59 | NN | denotes | h |
T23208 | 60-62 | IN | denotes | at |
T23209 | 63-65 | CD | denotes | 37 |
T23210 | 65-66 | CD | denotes | ° |
T23211 | 66-67 | NNP | denotes | C |
T23212 | 67-68 | . | denotes | . |
T23213 | 69-72 | DT | denotes | The |
T23214 | 73-78 | NNS | denotes | cells |
T23215 | 79-83 | VBD | denotes | were |
T23216 | 84-92 | VBN | denotes | pelleted |
T23217 | 92-93 | , | denotes | , |
T23218 | 94-105 | VBN | denotes | resuspended |
T23219 | 106-108 | IN | denotes | in |
T23220 | 109-115 | NN | denotes | buffer |
T23221 | 116-117 | NNP | denotes | C |
T23222 | 118-119 | -LRB- | denotes | ( |
T23223 | 119-121 | CD | denotes | 20 |
T23224 | 122-124 | NNP | denotes | mM |
T23225 | 125-130 | NNP | denotes | HEPES |
T23226 | 131-132 | NNP | denotes | [ |
T23227 | 132-134 | NNP | denotes | pH |
T23228 | 135-138 | CD | denotes | 7.9 |
T23229 | 138-139 | NNP | denotes | ] |
T23230 | 139-140 | , | denotes | , |
T23231 | 141-144 | CD | denotes | 420 |
T23232 | 145-147 | NNP | denotes | mM |
T23233 | 148-152 | NNP | denotes | NaCl |
T23234 | 152-153 | , | denotes | , |
T23235 | 154-157 | CD | denotes | 1.5 |
T23236 | 158-160 | NNP | denotes | mM |
T23237 | 161-166 | NNP | denotes | MgCl2 |
T23238 | 166-167 | , | denotes | , |
T23239 | 168-171 | CD | denotes | 0.2 |
T23240 | 172-174 | NNP | denotes | mM |
T23241 | 175-179 | NNP | denotes | EDTA |
T23242 | 179-180 | , | denotes | , |
T23243 | 181-182 | CD | denotes | 1 |
T23244 | 183-185 | NNP | denotes | mM |
T23245 | 186-189 | NNP | denotes | DTT |
T23246 | 189-190 | , | denotes | , |
T23247 | 191-199 | NN | denotes | protease |
T23248 | 200-210 | NNS | denotes | inhibitors |
T23249 | 211-212 | NNP | denotes | [ |
T23250 | 212-217 | NNP | denotes | Sigma |
T23251 | 217-218 | NNP | denotes | ] |
T23252 | 218-219 | . | denotes | . |
T23253 | 220-223 | CC | denotes | and |
T23254 | 224-227 | CD | denotes | 0.1 |
T23255 | 227-228 | NN | denotes | % |
T23256 | 229-234 | NN | denotes | NP-40 |
T23257 | 234-235 | -RRB- | denotes | ) |
T23258 | 236-239 | CC | denotes | and |
T23259 | 240-245 | VBN | denotes | lysed |
T23260 | 246-248 | IN | denotes | on |
T23261 | 249-252 | NN | denotes | ice |
T23262 | 253-256 | IN | denotes | for |
T23263 | 257-259 | CD | denotes | 15 |
T23264 | 260-263 | NN | denotes | min |
T23265 | 263-264 | . | denotes | . |
R17374 | T23195 | T23198 | nummod | CD4,cells |
R17375 | T23196 | T23198 | nummod | +,cells |
R17376 | T23197 | T23198 | compound | T,cells |
R17377 | T23198 | T23200 | nsubjpass | cells,stimulated |
R17378 | T23199 | T23200 | auxpass | were,stimulated |
R17379 | T23200 | T23200 | ROOT | stimulated,stimulated |
R17380 | T23201 | T23200 | prep | with,stimulated |
R17381 | T23202 | T23201 | pobj | PMA,with |
R17382 | T23203 | T23202 | cc | and,PMA |
R17383 | T23204 | T23202 | conj | ionomycin,PMA |
R17384 | T23205 | T23200 | prep | for,stimulated |
R17385 | T23206 | T23207 | nummod | 2,h |
R17386 | T23207 | T23205 | pobj | h,for |
R17387 | T23208 | T23200 | prep | at,stimulated |
R17388 | T23209 | T23210 | nummod | 37,° |
R17389 | T23210 | T23211 | nummod | °,C |
R17390 | T23211 | T23208 | pobj | C,at |
R17391 | T23212 | T23200 | punct | .,stimulated |
R17392 | T23213 | T23214 | det | The,cells |
R17393 | T23214 | T23216 | nsubjpass | cells,pelleted |
R17394 | T23215 | T23216 | auxpass | were,pelleted |
R17395 | T23216 | T23216 | ROOT | pelleted,pelleted |
R17396 | T23217 | T23216 | punct | ",",pelleted |
R17397 | T23218 | T23216 | conj | resuspended,pelleted |
R17398 | T23219 | T23218 | prep | in,resuspended |
R17399 | T23220 | T23221 | compound | buffer,C |
R17400 | T23221 | T23219 | pobj | C,in |
R17401 | T23222 | T23229 | punct | (,] |
R17402 | T23223 | T23229 | nummod | 20,] |
R17403 | T23224 | T23227 | compound | mM,pH |
R17404 | T23225 | T23227 | compound | HEPES,pH |
R17405 | T23226 | T23227 | compound | [,pH |
R17406 | T23227 | T23229 | compound | pH,] |
R17407 | T23228 | T23229 | compound | 7.9,] |
R17408 | T23229 | T23221 | appos | ],C |
R17409 | T23230 | T23229 | punct | ",",] |
R17410 | T23231 | T23233 | nummod | 420,NaCl |
R17411 | T23232 | T23233 | compound | mM,NaCl |
R17412 | T23233 | T23229 | appos | NaCl,] |
R17413 | T23234 | T23233 | punct | ",",NaCl |
R17414 | T23235 | T23237 | nummod | 1.5,MgCl2 |
R17415 | T23236 | T23237 | compound | mM,MgCl2 |
R17416 | T23237 | T23233 | appos | MgCl2,NaCl |
R17417 | T23238 | T23237 | punct | ",",MgCl2 |
R17418 | T23239 | T23241 | nummod | 0.2,EDTA |
R17419 | T23240 | T23241 | compound | mM,EDTA |
R17420 | T23241 | T23237 | appos | EDTA,MgCl2 |
R17421 | T23242 | T23241 | punct | ",",EDTA |
R17422 | T23243 | T23245 | nummod | 1,DTT |
R17423 | T23244 | T23245 | compound | mM,DTT |
R17424 | T23245 | T23241 | appos | DTT,EDTA |
R17425 | T23246 | T23245 | punct | ",",DTT |
R17426 | T23247 | T23248 | compound | protease,inhibitors |
R17427 | T23248 | T23259 | nsubj | inhibitors,lysed |
R17428 | T23249 | T23251 | compound | [,] |
R17429 | T23250 | T23251 | compound | Sigma,] |
R17430 | T23251 | T23248 | appos | ],inhibitors |
R17431 | T23252 | T23251 | punct | .,] |
R17432 | T23253 | T23248 | cc | and,inhibitors |
R17433 | T23254 | T23255 | nummod | 0.1,% |
R17434 | T23255 | T23256 | compound | %,NP-40 |
R17435 | T23256 | T23248 | conj | NP-40,inhibitors |
R17436 | T23257 | T23256 | punct | ),NP-40 |
R17437 | T23258 | T23256 | cc | and,NP-40 |
R17438 | T23259 | T23218 | ccomp | lysed,resuspended |
R17439 | T23260 | T23259 | prep | on,lysed |
R17440 | T23261 | T23260 | pobj | ice,on |
R17441 | T23262 | T23259 | prep | for,lysed |
R17442 | T23263 | T23264 | nummod | 15,min |
R17443 | T23264 | T23262 | pobj | min,for |
R17444 | T23265 | T23216 | punct | .,pelleted |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23412 | 7-12 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T23413 | 73-78 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T22968 | 0-264 | Sentence | denotes | CD4+ T cells were stimulated with PMA and ionomycin for 2 h at 37°C. The cells were pelleted, resuspended in buffer C (20 mM HEPES [pH 7.9], 420 mM NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 1 mM DTT, protease inhibitors [Sigma]. and 0.1% NP-40) and lysed on ice for 15 min. |
T345 | 0-68 | Sentence | denotes | CD4+ T cells were stimulated with PMA and ionomycin for 2 h at 37°C. |
T346 | 69-264 | Sentence | denotes | The cells were pelleted, resuspended in buffer C (20 mM HEPES [pH 7.9], 420 mM NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 1 mM DTT, protease inhibitors [Sigma]. and 0.1% NP-40) and lysed on ice for 15 min. |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23424 | 0-3 | Protein | denotes | CD4 |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23415 | 0-4 | Protein | denotes | CD4+ |
T23416 | 183-210 | Protein | denotes | mM DTT, protease inhibitors |
T23417 | 212-217 | Protein | denotes | Sigma |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T22965 | 0-3 | Protein | denotes | CD4 |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T23182 | 0-3 | P01730 | denotes | CD4 |
T23183 | 132-134 | P0A7Z4 | denotes | pH |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T22963 | 0-3 | Protein | denotes | CD4 |