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PMC:2222968 / 45716-45980 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22977 0-4 JJ denotes CD4+
T22978 5-6 NN denotes T
T22979 7-12 NN denotes cells
T22980 13-17 VB denotes were
T22981 18-28 VB denotes stimulated
T22982 29-33 IN denotes with
T22983 34-37 NN denotes PMA
T22984 38-41 CC denotes and
T22985 42-51 NN denotes ionomycin
T22986 52-55 IN denotes for
T22987 56-57 CD denotes 2
T22988 58-59 NN denotes h
T22989 60-62 IN denotes at
T22990 63-68 NNP denotes 37°C.
T22991 69-72 DT denotes The
T22992 73-78 NN denotes cells
T22993 79-83 VB denotes were
T22994 84-92 VB denotes pelleted
T22995 92-93 -COMMA- denotes ,
T22996 94-105 VB denotes resuspended
T22997 106-108 IN denotes in
T22998 109-115 NN denotes buffer
T22999 116-117 NN denotes C
T23000 118-119 -LRB- denotes (
T23001 119-121 CD denotes 20
T23002 122-124 NN denotes mM
T23003 125-130 NN denotes HEPES
T23004 131-132 -LRB- denotes [
T23005 132-134 NN denotes pH
T23006 135-138 CD denotes 7.9
T23007 138-139 -RRB- denotes ]
T23008 139-140 -COMMA- denotes ,
T23009 141-144 CD denotes 420
T23010 145-147 NN denotes mM
T23011 148-152 NN denotes NaCl
T23012 152-153 -COMMA- denotes ,
T23013 154-157 CD denotes 1.5
T23014 158-160 NN denotes mM
T23015 161-166 NN denotes MgCl2
T23016 166-167 -COMMA- denotes ,
T23017 168-171 CD denotes 0.2
T23018 172-174 NN denotes mM
T23019 175-179 NN denotes EDTA
T23020 179-180 -COMMA- denotes ,
T23021 181-182 CD denotes 1
T23022 183-185 NN denotes mM
T23023 186-189 NN denotes DTT
T23024 189-190 -COMMA- denotes ,
T23025 191-199 NN denotes protease
T23026 200-210 NN denotes inhibitors
T23027 211-212 -LRB- denotes [
T23028 212-217 NNP denotes Sigma
T23029 217-218 -RRB- denotes ]
T23030 218-221 CC denotes . a
T23031 221-224 CD denotes nd
T23032 224-225 NN denotes 0
T23033 225-230 NN denotes .1% N
T23034 230-231 -RRB- denotes P
T23035 231-234 CC denotes -40
T23036 234-239 VB denotes ) and
T23037 240-242 IN denotes ly
T23038 242-245 NN denotes sed
T23039 246-249 IN denotes on
T23040 249-251 CD denotes ic
T23041 251-254 NN denotes e f
R17159 T22979 T22977 arg1Of cells,CD4+
R17160 T22979 T22978 arg1Of cells,T
R17161 T22979 T22980 arg1Of cells,were
R17162 T22979 T22981 arg2Of cells,stimulated
R17163 T22981 T22980 arg2Of stimulated,were
R17164 T22981 T22982 arg1Of stimulated,with
R17165 T22983 T22984 arg1Of PMA,and
R17166 T22984 T22982 arg2Of and,with
R17167 T22984 T22986 arg1Of and,for
R17168 T22984 T22989 arg1Of and,at
R17169 T22985 T22984 arg2Of ionomycin,and
R17170 T22988 T22986 arg2Of h,for
R17171 T22988 T22987 arg1Of h,2
R17172 T22990 T22989 arg2Of 37°C.,at
R17173 T22992 T22991 arg1Of cells,The
R17174 T22992 T22993 arg1Of cells,were
R17175 T22992 T22994 arg2Of cells,pelleted
R17176 T22992 T22996 arg2Of cells,resuspended
R17177 T22992 T23036 arg2Of cells,) and
R17178 T22994 T22995 arg1Of pelleted,","
R17179 T22995 T23000 arg1Of ",",(
R17180 T22995 T23035 arg1Of ",",-40
R17181 T22996 T22995 arg2Of resuspended,","
R17182 T22996 T22997 arg1Of resuspended,in
R17183 T22999 T22997 arg2Of C,in
R17184 T22999 T22998 arg1Of C,buffer
R17185 T23001 T23002 arg1Of 20,mM
R17186 T23003 T23001 arg1Of HEPES,20
R17187 T23003 T23004 arg1Of HEPES,[
R17188 T23003 T23008 arg1Of HEPES,","
R17189 T23005 T23004 arg2Of pH,[
R17190 T23005 T23006 arg1Of pH,7.9
R17191 T23007 T23004 arg3Of ],[
R17192 T23008 T23024 arg1Of ",",","
R17193 T23009 T23010 arg1Of 420,mM
R17194 T23011 T23009 arg1Of NaCl,420
R17195 T23011 T23012 arg1Of NaCl,","
R17196 T23012 T23016 arg1Of ",",","
R17197 T23013 T23014 arg1Of 1.5,mM
R17198 T23015 T23012 arg2Of MgCl2,","
R17199 T23015 T23013 arg1Of MgCl2,1.5
R17200 T23016 T23020 arg1Of ",",","
R17201 T23017 T23018 arg1Of 0.2,mM
R17202 T23019 T23016 arg2Of EDTA,","
R17203 T23019 T23017 arg1Of EDTA,0.2
R17204 T23020 T23008 arg2Of ",",","
R17205 T23021 T23022 arg1Of 1,mM
R17206 T23023 T23020 arg2Of DTT,","
R17207 T23023 T23021 arg1Of DTT,1
R17208 T23024 T23030 arg1Of ",",. a
R17209 T23026 T23024 arg2Of inhibitors,","
R17210 T23026 T23025 arg1Of inhibitors,protease
R17211 T23026 T23027 arg1Of inhibitors,[
R17212 T23028 T23027 arg2Of Sigma,[
R17213 T23029 T23027 arg3Of ],[
R17214 T23030 T23000 arg2Of . a,(
R17215 T23031 T23032 arg1Of nd ,0
R17216 T23033 T23030 arg2Of .1% N,. a
R17217 T23033 T23031 arg1Of .1% N,nd
R17218 T23034 T23000 arg3Of P,(
R17219 T23035 T22980 modOf -40,were
R17220 T23035 T22993 arg2Of -40,were
R17221 T23036 T23035 arg2Of ) and,-40
R17222 T23036 T23037 arg1Of ) and,ly
R17223 T23036 T23039 arg1Of ) and,on
R17224 T23038 T23037 arg2Of sed,ly
R17225 T23041 T23039 arg2Of e f,on
R17226 T23041 T23040 arg1Of e f,ic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23195 0-3 CD denotes CD4
T23196 3-4 CD denotes +
T23197 5-6 NNP denotes T
T23198 7-12 NNS denotes cells
T23199 13-17 VBD denotes were
T23200 18-28 VBN denotes stimulated
T23201 29-33 IN denotes with
T23202 34-37 NNP denotes PMA
T23203 38-41 CC denotes and
T23204 42-51 NN denotes ionomycin
T23205 52-55 IN denotes for
T23206 56-57 CD denotes 2
T23207 58-59 NN denotes h
T23208 60-62 IN denotes at
T23209 63-65 CD denotes 37
T23210 65-66 CD denotes °
T23211 66-67 NNP denotes C
T23212 67-68 . denotes .
T23213 69-72 DT denotes The
T23214 73-78 NNS denotes cells
T23215 79-83 VBD denotes were
T23216 84-92 VBN denotes pelleted
T23217 92-93 , denotes ,
T23218 94-105 VBN denotes resuspended
T23219 106-108 IN denotes in
T23220 109-115 NN denotes buffer
T23221 116-117 NNP denotes C
T23222 118-119 -LRB- denotes (
T23223 119-121 CD denotes 20
T23224 122-124 NNP denotes mM
T23225 125-130 NNP denotes HEPES
T23226 131-132 NNP denotes [
T23227 132-134 NNP denotes pH
T23228 135-138 CD denotes 7.9
T23229 138-139 NNP denotes ]
T23230 139-140 , denotes ,
T23231 141-144 CD denotes 420
T23232 145-147 NNP denotes mM
T23233 148-152 NNP denotes NaCl
T23234 152-153 , denotes ,
T23235 154-157 CD denotes 1.5
T23236 158-160 NNP denotes mM
T23237 161-166 NNP denotes MgCl2
T23238 166-167 , denotes ,
T23239 168-171 CD denotes 0.2
T23240 172-174 NNP denotes mM
T23241 175-179 NNP denotes EDTA
T23242 179-180 , denotes ,
T23243 181-182 CD denotes 1
T23244 183-185 NNP denotes mM
T23245 186-189 NNP denotes DTT
T23246 189-190 , denotes ,
T23247 191-199 NN denotes protease
T23248 200-210 NNS denotes inhibitors
T23249 211-212 NNP denotes [
T23250 212-217 NNP denotes Sigma
T23251 217-218 NNP denotes ]
T23252 218-219 . denotes .
T23253 220-223 CC denotes and
T23254 224-227 CD denotes 0.1
T23255 227-228 NN denotes %
T23256 229-234 NN denotes NP-40
T23257 234-235 -RRB- denotes )
T23258 236-239 CC denotes and
T23259 240-245 VBN denotes lysed
T23260 246-248 IN denotes on
T23261 249-252 NN denotes ice
T23262 253-256 IN denotes for
T23263 257-259 CD denotes 15
T23264 260-263 NN denotes min
T23265 263-264 . denotes .
R17374 T23195 T23198 nummod CD4,cells
R17375 T23196 T23198 nummod +,cells
R17376 T23197 T23198 compound T,cells
R17377 T23198 T23200 nsubjpass cells,stimulated
R17378 T23199 T23200 auxpass were,stimulated
R17379 T23200 T23200 ROOT stimulated,stimulated
R17380 T23201 T23200 prep with,stimulated
R17381 T23202 T23201 pobj PMA,with
R17382 T23203 T23202 cc and,PMA
R17383 T23204 T23202 conj ionomycin,PMA
R17384 T23205 T23200 prep for,stimulated
R17385 T23206 T23207 nummod 2,h
R17386 T23207 T23205 pobj h,for
R17387 T23208 T23200 prep at,stimulated
R17388 T23209 T23210 nummod 37,°
R17389 T23210 T23211 nummod °,C
R17390 T23211 T23208 pobj C,at
R17391 T23212 T23200 punct .,stimulated
R17392 T23213 T23214 det The,cells
R17393 T23214 T23216 nsubjpass cells,pelleted
R17394 T23215 T23216 auxpass were,pelleted
R17395 T23216 T23216 ROOT pelleted,pelleted
R17396 T23217 T23216 punct ",",pelleted
R17397 T23218 T23216 conj resuspended,pelleted
R17398 T23219 T23218 prep in,resuspended
R17399 T23220 T23221 compound buffer,C
R17400 T23221 T23219 pobj C,in
R17401 T23222 T23229 punct (,]
R17402 T23223 T23229 nummod 20,]
R17403 T23224 T23227 compound mM,pH
R17404 T23225 T23227 compound HEPES,pH
R17405 T23226 T23227 compound [,pH
R17406 T23227 T23229 compound pH,]
R17407 T23228 T23229 compound 7.9,]
R17408 T23229 T23221 appos ],C
R17409 T23230 T23229 punct ",",]
R17410 T23231 T23233 nummod 420,NaCl
R17411 T23232 T23233 compound mM,NaCl
R17412 T23233 T23229 appos NaCl,]
R17413 T23234 T23233 punct ",",NaCl
R17414 T23235 T23237 nummod 1.5,MgCl2
R17415 T23236 T23237 compound mM,MgCl2
R17416 T23237 T23233 appos MgCl2,NaCl
R17417 T23238 T23237 punct ",",MgCl2
R17418 T23239 T23241 nummod 0.2,EDTA
R17419 T23240 T23241 compound mM,EDTA
R17420 T23241 T23237 appos EDTA,MgCl2
R17421 T23242 T23241 punct ",",EDTA
R17422 T23243 T23245 nummod 1,DTT
R17423 T23244 T23245 compound mM,DTT
R17424 T23245 T23241 appos DTT,EDTA
R17425 T23246 T23245 punct ",",DTT
R17426 T23247 T23248 compound protease,inhibitors
R17427 T23248 T23259 nsubj inhibitors,lysed
R17428 T23249 T23251 compound [,]
R17429 T23250 T23251 compound Sigma,]
R17430 T23251 T23248 appos ],inhibitors
R17431 T23252 T23251 punct .,]
R17432 T23253 T23248 cc and,inhibitors
R17433 T23254 T23255 nummod 0.1,%
R17434 T23255 T23256 compound %,NP-40
R17435 T23256 T23248 conj NP-40,inhibitors
R17436 T23257 T23256 punct ),NP-40
R17437 T23258 T23256 cc and,NP-40
R17438 T23259 T23218 ccomp lysed,resuspended
R17439 T23260 T23259 prep on,lysed
R17440 T23261 T23260 pobj ice,on
R17441 T23262 T23259 prep for,lysed
R17442 T23263 T23264 nummod 15,min
R17443 T23264 T23262 pobj min,for
R17444 T23265 T23216 punct .,pelleted

GO-CC

Id Subject Object Predicate Lexical cue
T23412 7-12 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23413 73-78 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T22968 0-264 Sentence denotes CD4+ T cells were stimulated with PMA and ionomycin for 2 h at 37°C. The cells were pelleted, resuspended in buffer C (20 mM HEPES [pH 7.9], 420 mM NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 1 mM DTT, protease inhibitors [Sigma]. and 0.1% NP-40) and lysed on ice for 15 min.
T345 0-68 Sentence denotes CD4+ T cells were stimulated with PMA and ionomycin for 2 h at 37°C.
T346 69-264 Sentence denotes The cells were pelleted, resuspended in buffer C (20 mM HEPES [pH 7.9], 420 mM NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 1 mM DTT, protease inhibitors [Sigma]. and 0.1% NP-40) and lysed on ice for 15 min.

events-check-again

Id Subject Object Predicate Lexical cue
T23424 0-3 Protein denotes CD4

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T23415 0-4 Protein denotes CD4+
T23416 183-210 Protein denotes mM DTT, protease inhibitors
T23417 212-217 Protein denotes Sigma

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T22965 0-3 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23182 0-3 P01730 denotes CD4
T23183 132-134 P0A7Z4 denotes pH

test2

Id Subject Object Predicate Lexical cue
T22963 0-3 Protein denotes CD4