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PMC:2222968 / 40282-40745 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-17298430-84705063 213-215 17298430 denotes 63
T99961 213-215 17298430 denotes 63

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20175 0-11 JJ denotes Recombinant
T20176 12-15 NN denotes TAT
T20177 16-24 NN denotes proteins
T20178 26-29 DT denotes The
T20179 30-35 NN denotes cDNAs
T20180 36-44 VB denotes encoding
T20181 45-50 NN denotes GATA3
T20182 51-58 NN denotes protein
T20183 59-61 CC denotes or
T20184 62-65 DT denotes the
T20185 66-75 VB denotes truncated
T20186 76-81 NN denotes GATA3
T20187 82-83 -LRB- denotes (
T20188 83-90 VB denotes lacking
T20189 91-94 DT denotes the
T20190 95-98 CD denotes two
T20191 99-103 NN denotes zinc
T20192 104-111 NN denotes fingers
T20193 111-112 -RRB- denotes )
T20194 113-117 VB denotes were
T20195 118-124 VB denotes cloned
T20196 125-127 IN denotes in
T20197 128-133 NN denotes frame
T20198 134-138 IN denotes into
T20199 139-141 DT denotes an
T20200 142-152 NN denotes expression
T20201 153-159 NN denotes vector
T20202 160-165 IN denotes along
T20203 166-170 IN denotes with
T20204 171-174 DT denotes the
T20205 175-178 NN denotes TAT
T20206 179-187 NN denotes sequence
T20207 188-190 IN denotes as
T20208 191-201 RB denotes previously
T20209 202-211 VB denotes described
T20210 212-213 -LRB- denotes [
T20211 213-215 CD denotes 63
T20212 215-216 -RRB- denotes ]
T20213 218-226 NN denotes Proteins
T20214 227-231 VB denotes were
T20215 232-241 VB denotes expressed
T20216 242-244 IN denotes in
T20217 245-249 NN denotes BL21
T20218 250-254 NN denotes Star
T20219 255-256 -LRB- denotes (
T20220 256-259 NN denotes DE3
T20221 259-260 -RRB- denotes )
T20222 260-265 NN denotes pLysS
T20223 266-267 -LRB- denotes (
T20224 267-277 NN denotes Invitrogen
T20225 277-278 -RRB- denotes )
T20226 279-282 CC denotes and
T20227 283-290 NN denotes lysates
T20228 291-295 VB denotes were
T20229 296-304 VB denotes purified
T20230 305-307 IN denotes by
T20231 308-320 JJ denotes Ni2+-chelate
T20232 321-327 NN denotes column
T20233 328-342 NN denotes chromatography
T20234 344-348 DT denotes Both
T20235 349-359 JJ denotes TAT-linked
T20236 360-368 NN denotes proteins
T20237 369-373 VB denotes were
T20238 374-378 JJ denotes more
T20239 379-383 IN denotes than
T20240 384-386 CD denotes 95
T20241 386-387 NN denotes %
T20242 388-392 JJ denotes pure
T20243 392-393 -COMMA- denotes ,
T20244 394-399 VB denotes based
T20245 400-402 IN denotes on
T20246 403-412 NNP denotes Coomassie
T20247 413-417 JJ denotes blue
T20248 418-426 NN denotes staining
T20249 427-429 IN denotes of
T20250 430-436 NN denotes sodium
T20251 437-446 NN denotes disulfate
T20252 447-457 NN denotes acrylamide
T20253 458-462 NN denotes gels
R15111 T20177 T20175 arg1Of proteins,Recombinant
R15112 T20177 T20176 arg1Of proteins,TAT
R15113 T20179 T20178 arg1Of cDNAs,The
R15114 T20179 T20180 arg1Of cDNAs,encoding
R15115 T20179 T20187 arg1Of cDNAs,(
R15116 T20179 T20194 arg1Of cDNAs,were
R15117 T20179 T20195 arg2Of cDNAs,cloned
R15118 T20182 T20181 arg1Of protein,GATA3
R15119 T20182 T20183 arg1Of protein,or
R15120 T20183 T20180 arg2Of or,encoding
R15121 T20186 T20183 arg2Of GATA3,or
R15122 T20186 T20184 arg1Of GATA3,the
R15123 T20186 T20185 arg2Of GATA3,truncated
R15124 T20188 T20187 arg2Of lacking,(
R15125 T20192 T20188 arg2Of fingers,lacking
R15126 T20192 T20189 arg1Of fingers,the
R15127 T20192 T20190 arg1Of fingers,two
R15128 T20192 T20191 arg1Of fingers,zinc
R15129 T20193 T20187 arg3Of ),(
R15130 T20195 T20194 arg2Of cloned,were
R15131 T20195 T20196 arg1Of cloned,in
R15132 T20195 T20198 arg1Of cloned,into
R15133 T20195 T20203 arg1Of cloned,with
R15134 T20197 T20196 arg2Of frame,in
R15135 T20201 T20198 arg2Of vector,into
R15136 T20201 T20199 arg1Of vector,an
R15137 T20201 T20200 arg1Of vector,expression
R15138 T20203 T20202 arg1Of with,along
R15139 T20206 T20203 arg2Of sequence,with
R15140 T20206 T20204 arg1Of sequence,the
R15141 T20206 T20205 arg1Of sequence,TAT
R15142 T20206 T20207 arg1Of sequence,as
R15143 T20209 T20208 arg1Of described,previously
R15144 T20211 T20207 arg2Of 63,as
R15145 T20211 T20209 arg1Of 63,described
R15146 T20211 T20210 arg2Of 63,[
R15147 T20212 T20210 arg3Of ],[
R15148 T20213 T20214 arg1Of Proteins,were
R15149 T20213 T20215 arg2Of Proteins,expressed
R15150 T20215 T20214 arg2Of expressed,were
R15151 T20215 T20216 arg1Of expressed,in
R15152 T20215 T20226 arg1Of expressed,and
R15153 T20218 T20217 arg1Of Star,BL21
R15154 T20218 T20219 arg1Of Star,(
R15155 T20220 T20219 arg2Of DE3,(
R15156 T20221 T20219 arg3Of ),(
R15157 T20222 T20216 arg2Of pLysS,in
R15158 T20222 T20218 arg1Of pLysS,Star
R15159 T20222 T20223 arg1Of pLysS,(
R15160 T20224 T20223 arg2Of Invitrogen,(
R15161 T20225 T20223 arg3Of ),(
R15162 T20227 T20228 arg1Of lysates,were
R15163 T20227 T20229 arg2Of lysates,purified
R15164 T20229 T20226 arg2Of purified,and
R15165 T20229 T20228 arg2Of purified,were
R15166 T20233 T20229 arg1Of chromatography,purified
R15167 T20233 T20230 arg2Of chromatography,by
R15168 T20233 T20231 arg1Of chromatography,Ni2+-chelate
R15169 T20233 T20232 arg1Of chromatography,column
R15170 T20236 T20234 arg1Of proteins,Both
R15171 T20236 T20235 arg1Of proteins,TAT-linked
R15172 T20236 T20237 arg1Of proteins,were
R15173 T20237 T20243 arg1Of were,","
R15174 T20237 T20244 arg1Of were,based
R15175 T20238 T20239 arg1Of more,than
R15176 T20240 T20239 arg2Of 95,than
R15177 T20240 T20241 arg1Of 95,%
R15178 T20242 T20237 arg2Of pure,were
R15179 T20242 T20238 arg1Of pure,more
R15180 T20245 T20244 arg2Of on,based
R15181 T20248 T20245 arg2Of staining,on
R15182 T20248 T20246 arg1Of staining,Coomassie
R15183 T20248 T20247 arg1Of staining,blue
R15184 T20248 T20249 arg1Of staining,of
R15185 T20253 T20249 arg2Of gels,of
R15186 T20253 T20250 arg1Of gels,sodium
R15187 T20253 T20251 arg1Of gels,disulfate
R15188 T20253 T20252 arg1Of gels,acrylamide

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20272 0-11 JJ denotes Recombinant
T20273 12-15 NNP denotes TAT
T20274 16-24 NNS denotes proteins
T20275 24-25 . denotes .
T20276 26-29 DT denotes The
T20277 30-35 NNP denotes cDNAs
T20278 36-44 VBG denotes encoding
T20279 45-50 CD denotes GATA3
T20280 51-58 NN denotes protein
T20281 59-61 CC denotes or
T20282 62-65 DT denotes the
T20283 66-75 VBN denotes truncated
T20284 76-81 NNP denotes GATA3
T20285 82-83 -LRB- denotes (
T20286 83-90 VBG denotes lacking
T20287 91-94 DT denotes the
T20288 95-98 CD denotes two
T20289 99-103 NN denotes zinc
T20290 104-111 NNS denotes fingers
T20291 111-112 -RRB- denotes )
T20292 113-117 VBD denotes were
T20293 118-124 VBN denotes cloned
T20294 125-127 IN denotes in
T20295 128-133 NN denotes frame
T20296 134-138 IN denotes into
T20297 139-141 DT denotes an
T20298 142-152 NN denotes expression
T20299 153-159 NN denotes vector
T20300 160-165 IN denotes along
T20301 166-170 IN denotes with
T20302 171-174 DT denotes the
T20303 175-178 NNP denotes TAT
T20304 179-187 NN denotes sequence
T20305 188-190 IN denotes as
T20306 191-201 RB denotes previously
T20307 202-211 VBN denotes described
T20308 212-213 NNP denotes [
T20309 213-215 CD denotes 63
T20310 215-216 NNP denotes ]
T20311 216-217 . denotes .
T20312 218-226 NNPS denotes Proteins
T20313 227-231 VBD denotes were
T20314 232-241 VBN denotes expressed
T20315 242-244 IN denotes in
T20316 245-249 NNP denotes BL21
T20317 250-254 NNP denotes Star
T20318 255-256 -LRB- denotes (
T20319 256-259 NNP denotes DE3
T20320 259-260 -RRB- denotes )
T20321 260-265 NNP denotes pLysS
T20322 266-267 -LRB- denotes (
T20323 267-277 NNP denotes Invitrogen
T20324 277-278 -RRB- denotes )
T20325 279-282 CC denotes and
T20326 283-290 NNS denotes lysates
T20327 291-295 VBD denotes were
T20328 296-304 VBN denotes purified
T20329 305-307 IN denotes by
T20330 308-311 NNP denotes Ni2
T20331 311-312 SYM denotes +
T20332 312-313 : denotes -
T20333 313-320 NN denotes chelate
T20334 321-327 NN denotes column
T20335 328-342 NN denotes chromatography
T20336 342-343 . denotes .
T20337 344-348 DT denotes Both
T20338 349-359 JJ denotes TAT-linked
T20339 360-368 NNS denotes proteins
T20340 369-373 VBD denotes were
T20341 374-378 JJR denotes more
T20342 379-383 IN denotes than
T20343 384-386 CD denotes 95
T20344 386-387 NN denotes %
T20345 388-392 JJ denotes pure
T20346 392-393 , denotes ,
T20347 394-399 VBN denotes based
T20348 400-402 IN denotes on
T20349 403-412 NNP denotes Coomassie
T20350 413-417 JJ denotes blue
T20351 418-426 NN denotes staining
T20352 427-429 IN denotes of
T20353 430-436 NN denotes sodium
T20354 437-446 NN denotes disulfate
T20355 447-457 NN denotes acrylamide
T20356 458-462 NNS denotes gels
T20357 462-463 . denotes .
R15189 T20272 T20274 amod Recombinant,proteins
R15190 T20273 T20274 compound TAT,proteins
R15191 T20274 T20274 ROOT proteins,proteins
R15192 T20275 T20274 punct .,proteins
R15193 T20276 T20280 det The,protein
R15194 T20277 T20278 nsubj cDNAs,encoding
R15195 T20278 T20280 amod encoding,protein
R15196 T20279 T20280 nummod GATA3,protein
R15197 T20280 T20293 nsubjpass protein,cloned
R15198 T20281 T20280 cc or,protein
R15199 T20282 T20284 det the,GATA3
R15200 T20283 T20284 amod truncated,GATA3
R15201 T20284 T20280 conj GATA3,protein
R15202 T20285 T20286 punct (,lacking
R15203 T20286 T20284 acl lacking,GATA3
R15204 T20287 T20290 det the,fingers
R15205 T20288 T20290 nummod two,fingers
R15206 T20289 T20290 compound zinc,fingers
R15207 T20290 T20286 dobj fingers,lacking
R15208 T20291 T20290 punct ),fingers
R15209 T20292 T20293 auxpass were,cloned
R15210 T20293 T20293 ROOT cloned,cloned
R15211 T20294 T20293 prep in,cloned
R15212 T20295 T20294 pobj frame,in
R15213 T20296 T20293 prep into,cloned
R15214 T20297 T20299 det an,vector
R15215 T20298 T20299 compound expression,vector
R15216 T20299 T20296 pobj vector,into
R15217 T20300 T20299 prep along,vector
R15218 T20301 T20300 prep with,along
R15219 T20302 T20304 det the,sequence
R15220 T20303 T20304 compound TAT,sequence
R15221 T20304 T20301 pobj sequence,with
R15222 T20305 T20307 mark as,described
R15223 T20306 T20307 advmod previously,described
R15224 T20307 T20293 advcl described,cloned
R15225 T20308 T20310 nmod [,]
R15226 T20309 T20310 nummod 63,]
R15227 T20310 T20307 dobj ],described
R15228 T20311 T20293 punct .,cloned
R15229 T20312 T20314 nsubjpass Proteins,expressed
R15230 T20313 T20314 auxpass were,expressed
R15231 T20314 T20314 ROOT expressed,expressed
R15232 T20315 T20314 prep in,expressed
R15233 T20316 T20317 compound BL21,Star
R15234 T20317 T20315 pobj Star,in
R15235 T20318 T20317 punct (,Star
R15236 T20319 T20317 appos DE3,Star
R15237 T20320 T20317 punct ),Star
R15238 T20321 T20328 nsubjpass pLysS,purified
R15239 T20322 T20323 punct (,Invitrogen
R15240 T20323 T20321 appos Invitrogen,pLysS
R15241 T20324 T20323 punct ),Invitrogen
R15242 T20325 T20321 cc and,pLysS
R15243 T20326 T20321 conj lysates,pLysS
R15244 T20327 T20328 auxpass were,purified
R15245 T20328 T20314 advcl purified,expressed
R15246 T20329 T20328 agent by,purified
R15247 T20330 T20329 pobj Ni2,by
R15248 T20331 T20333 punct +,chelate
R15249 T20332 T20333 punct -,chelate
R15250 T20333 T20334 compound chelate,column
R15251 T20334 T20335 compound column,chromatography
R15252 T20335 T20328 prep chromatography,purified
R15253 T20336 T20314 punct .,expressed
R15254 T20337 T20339 det Both,proteins
R15255 T20338 T20339 amod TAT-linked,proteins
R15256 T20339 T20340 nsubj proteins,were
R15257 T20340 T20340 ROOT were,were
R15258 T20341 T20343 amod more,95
R15259 T20342 T20343 quantmod than,95
R15260 T20343 T20344 nummod 95,%
R15261 T20344 T20345 npadvmod %,pure
R15262 T20345 T20340 acomp pure,were
R15263 T20346 T20340 punct ",",were
R15264 T20347 T20340 prep based,were
R15265 T20348 T20347 prep on,based
R15266 T20349 T20351 nmod Coomassie,staining
R15267 T20350 T20351 amod blue,staining
R15268 T20351 T20348 pobj staining,on
R15269 T20352 T20351 prep of,staining
R15270 T20353 T20356 compound sodium,gels
R15271 T20354 T20356 compound disulfate,gels
R15272 T20355 T20356 compound acrylamide,gels
R15273 T20356 T20352 pobj gels,of
R15274 T20357 T20340 punct .,were

sentences

Id Subject Object Predicate Lexical cue
T20171 0-25 Sentence denotes Recombinant TAT proteins.
T20172 26-217 Sentence denotes The cDNAs encoding GATA3 protein or the truncated GATA3 (lacking the two zinc fingers) were cloned in frame into an expression vector along with the TAT sequence as previously described [63].
T20173 218-343 Sentence denotes Proteins were expressed in BL21 Star (DE3)pLysS (Invitrogen) and lysates were purified by Ni2+-chelate column chromatography.
T20174 344-463 Sentence denotes Both TAT-linked proteins were more than 95% pure, based on Coomassie blue staining of sodium disulfate acrylamide gels.
T299 0-25 Sentence denotes Recombinant TAT proteins.
T300 26-217 Sentence denotes The cDNAs encoding GATA3 protein or the truncated GATA3 (lacking the two zinc fingers) were cloned in frame into an expression vector along with the TAT sequence as previously described [63].
T301 218-343 Sentence denotes Proteins were expressed in BL21 Star (DE3)pLysS (Invitrogen) and lysates were purified by Ni2+-chelate column chromatography.
T302 344-463 Sentence denotes Both TAT-linked proteins were more than 95% pure, based on Coomassie blue staining of sodium disulfate acrylamide gels.

events-check-again

Id Subject Object Predicate Lexical cue
T20392 12-15 Protein denotes TAT
T20393 45-50 Protein denotes GATA3
T20394 76-81 Protein denotes GATA3
T20395 83-90 Negative_regulation denotes lacking
T20396 95-111 Entity denotes two zinc fingers
T20397 175-178 Protein denotes TAT
T20398 349-352 Protein denotes TAT
R15284 T20396 T20395 themeOf two zinc fingers,lacking
R15285 T20396 T20394 partOf two zinc fingers,GATA3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20369 104-111 Entity denotes fingers
T20365 0-24 Protein denotes Recombinant TAT proteins
T20366 45-58 Protein denotes GATA3 protein
T20367 76-81 Protein denotes GATA3
T20368 175-187 Protein denotes TAT sequence
T20370 83-90 Negative_regulation denotes lacking
T20371 349-352 Protein denotes TAT
R15277 T20367 T20370 themeOf GATA3,lacking
R15278 T20367 T20369 partOf GATA3,fingers
R15279 T20369 T20370 Site fingers,lacking

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T20164 12-15 Protein denotes TAT
T20165 45-50 Protein denotes GATA3
T20166 76-81 Protein denotes GATA3
T20167 83-90 Negative_regulation denotes lacking
T20168 95-111 Entity denotes two zinc fingers
T20169 175-178 Protein denotes TAT
T20170 349-352 Protein denotes TAT
R15109 T20168 T20167 themeOf two zinc fingers,lacking
R15110 T20168 T20166 partOf two zinc fingers,GATA3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20254 12-15 P04605 denotes TAT
T20255 12-15 P04608 denotes TAT
T20256 12-15 P04610 denotes TAT
T20257 12-15 Q8UMQ1 denotes TAT
T20258 45-50 P23771 denotes GATA3
T20259 76-81 P23771 denotes GATA3
T20260 175-178 P04610 denotes TAT
T20261 175-178 Q8UMQ1 denotes TAT
T20262 175-178 P04608 denotes TAT
T20263 175-178 P04605 denotes TAT
T20264 349-352 Q8UMQ1 denotes TAT
T20265 349-352 P04610 denotes TAT
T20266 349-352 P04608 denotes TAT
T20267 349-352 P04605 denotes TAT

test2

Id Subject Object Predicate Lexical cue
T20157 12-15 Protein denotes TAT
T20158 45-50 Protein denotes GATA3
T20159 76-81 Protein denotes GATA3
T20160 83-90 Negative_regulation denotes lacking
T20161 95-111 Entity denotes two zinc fingers
T20162 175-178 Protein denotes TAT
T20163 349-352 Protein denotes TAT
R15107 T20161 T20160 themeOf two zinc fingers,lacking
R15108 T20161 T20159 partOf two zinc fingers,GATA3