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PMC:2222968 / 39973-40280 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20080 181-185 IN denotes with
T20081 186-192 NNP denotes TaqMan
T20082 193-214 NN denotes reverse-transcription
T20083 215-223 NN denotes reagents
T20084 224-225 -LRB- denotes (
T20085 225-232 NNP denotes Applied
T20086 233-243 NNP denotes Biosystems
T20087 243-244 -RRB- denotes )
T20088 245-249 IN denotes with
T20089 250-256 JJ denotes random
T20090 257-265 NN denotes hexamers
T20091 266-275 VB denotes according
T20092 276-278 TO denotes to
T20093 279-282 DT denotes the
T20094 283-295 NN denotes manufacturer
T20095 295-297 POS denotes 's
T20096 298-306 NN denotes protocol
T20051 0-3 NN denotes RNA
T20052 4-13 NN denotes isolation
T20053 14-17 CC denotes and
T20054 18-22 NN denotes cDNA
T20055 23-32 NN denotes synthesis
T20056 34-37 NN denotes RNA
T20057 38-41 VB denotes was
T20058 42-50 VB denotes isolated
T20059 51-56 VB denotes using
T20060 57-60 DT denotes the
T20061 61-67 NNP denotes RNeasy
T20062 68-72 NNP denotes Mini
T20063 73-76 NNP denotes Kit
T20064 77-78 -LRB- denotes (
T20065 78-84 NN denotes Qiagen
T20066 84-85 -RRB- denotes )
T20067 86-95 VB denotes according
T20068 96-98 TO denotes to
T20069 99-102 DT denotes the
T20070 103-115 NN denotes manufacturer
T20071 115-117 POS denotes 's
T20072 118-126 NN denotes protocol
T20073 128-135 JJ denotes Reverse
T20074 136-149 NN denotes transcription
T20075 150-152 IN denotes of
T20076 153-158 JJ denotes human
T20077 159-166 NN denotes samples
T20078 167-170 VB denotes was
T20079 171-180 VB denotes performed
R15017 T20058 T20057 arg2Of isolated,was
R15018 T20059 T20058 arg3Of using,isolated
R15019 T20059 T20067 arg1Of using,according
R15020 T20063 T20059 arg2Of Kit,using
R15021 T20063 T20060 arg1Of Kit,the
R15022 T20063 T20061 arg1Of Kit,RNeasy
R15023 T20063 T20062 arg1Of Kit,Mini
R15024 T20063 T20064 arg1Of Kit,(
R15025 T20065 T20064 arg2Of Qiagen,(
R15026 T20066 T20064 arg3Of ),(
R15027 T20068 T20067 arg2Of to,according
R15028 T20070 T20069 arg1Of manufacturer,the
R15029 T20070 T20071 arg2Of manufacturer,'s
R15030 T20072 T20068 arg2Of protocol,to
R15031 T20072 T20071 arg1Of protocol,'s
R15032 T20074 T20073 arg1Of transcription,Reverse
R15033 T20074 T20075 arg1Of transcription,of
R15034 T20074 T20078 arg1Of transcription,was
R15035 T20074 T20079 arg2Of transcription,performed
R15036 T20077 T20075 arg2Of samples,of
R15037 T20077 T20076 arg1Of samples,human
R15038 T20079 T20078 arg2Of performed,was
R15039 T20079 T20080 arg1Of performed,with
R15040 T20079 T20091 arg1Of performed,according
R15041 T20083 T20080 arg2Of reagents,with
R15042 T20083 T20081 arg1Of reagents,TaqMan
R15043 T20083 T20082 arg1Of reagents,reverse-transcription
R15044 T20083 T20084 arg1Of reagents,(
R15045 T20083 T20088 arg1Of reagents,with
R15046 T20086 T20084 arg2Of Biosystems,(
R15047 T20086 T20085 arg1Of Biosystems,Applied
R15048 T20087 T20084 arg3Of ),(
R15049 T20090 T20088 arg2Of hexamers,with
R15050 T20090 T20089 arg1Of hexamers,random
R15051 T20092 T20091 arg2Of to,according
R15052 T20094 T20093 arg1Of manufacturer,the
R15053 T20094 T20095 arg2Of manufacturer,'s
R15054 T20096 T20092 arg2Of protocol,to
R15055 T20096 T20095 arg1Of protocol,'s
R15011 T20052 T20051 arg1Of isolation,RNA
R15012 T20052 T20053 arg1Of isolation,and
R15013 T20055 T20053 arg2Of synthesis,and
R15014 T20055 T20054 arg1Of synthesis,cDNA
R15015 T20056 T20057 arg1Of RNA,was
R15016 T20056 T20058 arg2Of RNA,isolated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20100 0-3 NNP denotes RNA
T20101 4-13 NN denotes isolation
T20102 14-17 CC denotes and
T20103 18-22 NNP denotes cDNA
T20104 23-32 NN denotes synthesis
T20105 32-33 . denotes .
T20106 34-37 NNP denotes RNA
T20107 38-41 VBD denotes was
T20108 42-50 VBN denotes isolated
T20109 51-56 VBG denotes using
T20110 57-60 DT denotes the
T20111 61-67 NNP denotes RNeasy
T20112 68-72 NNP denotes Mini
T20113 73-76 NNP denotes Kit
T20114 77-78 -LRB- denotes (
T20115 78-84 NNP denotes Qiagen
T20116 84-85 -RRB- denotes )
T20117 86-95 VBG denotes according
T20118 96-98 TO denotes to
T20119 99-102 DT denotes the
T20120 103-115 NN denotes manufacturer
T20121 115-117 POS denotes 's
T20122 118-126 NN denotes protocol
T20123 126-127 . denotes .
T20124 128-135 VB denotes Reverse
T20125 136-149 NN denotes transcription
T20126 150-152 IN denotes of
T20127 153-158 JJ denotes human
T20128 159-166 NNS denotes samples
T20129 167-170 VBD denotes was
T20130 171-180 VBN denotes performed
T20131 181-185 IN denotes with
T20132 186-192 NNP denotes TaqMan
T20133 193-214 NN denotes reverse-transcription
T20134 215-223 NNS denotes reagents
T20135 224-225 -LRB- denotes (
T20136 225-232 NNP denotes Applied
T20137 233-243 NNPS denotes Biosystems
T20138 243-244 -RRB- denotes )
T20139 245-249 IN denotes with
T20140 250-256 JJ denotes random
T20141 257-265 NNS denotes hexamers
T20142 266-275 VBG denotes according
T20143 276-278 TO denotes to
T20144 279-282 DT denotes the
T20145 283-295 NN denotes manufacturer
T20146 295-297 POS denotes 's
T20147 298-306 NN denotes protocol
T20148 306-307 . denotes .
R15056 T20100 T20101 compound RNA,isolation
R15057 T20101 T20101 ROOT isolation,isolation
R15058 T20102 T20101 cc and,isolation
R15059 T20103 T20104 compound cDNA,synthesis
R15060 T20104 T20101 conj synthesis,isolation
R15061 T20105 T20101 punct .,isolation
R15062 T20106 T20108 nsubjpass RNA,isolated
R15063 T20107 T20108 auxpass was,isolated
R15064 T20108 T20108 ROOT isolated,isolated
R15065 T20109 T20108 advcl using,isolated
R15066 T20110 T20113 det the,Kit
R15067 T20111 T20113 compound RNeasy,Kit
R15068 T20112 T20113 compound Mini,Kit
R15069 T20113 T20109 dobj Kit,using
R15070 T20114 T20115 punct (,Qiagen
R15071 T20115 T20113 appos Qiagen,Kit
R15072 T20116 T20113 punct ),Kit
R15073 T20117 T20108 prep according,isolated
R15074 T20118 T20117 prep to,according
R15075 T20119 T20120 det the,manufacturer
R15076 T20120 T20122 poss manufacturer,protocol
R15077 T20121 T20120 case 's,manufacturer
R15078 T20122 T20118 pobj protocol,to
R15079 T20123 T20108 punct .,isolated
R15080 T20124 T20124 ROOT Reverse,Reverse
R15081 T20125 T20130 nsubjpass transcription,performed
R15082 T20126 T20125 prep of,transcription
R15083 T20127 T20128 amod human,samples
R15084 T20128 T20126 pobj samples,of
R15085 T20129 T20130 auxpass was,performed
R15086 T20130 T20124 ccomp performed,Reverse
R15087 T20131 T20130 prep with,performed
R15088 T20132 T20134 nmod TaqMan,reagents
R15089 T20133 T20134 compound reverse-transcription,reagents
R15090 T20134 T20131 pobj reagents,with
R15091 T20135 T20137 punct (,Biosystems
R15092 T20136 T20137 compound Applied,Biosystems
R15093 T20137 T20134 appos Biosystems,reagents
R15094 T20138 T20130 punct ),performed
R15095 T20139 T20130 prep with,performed
R15096 T20140 T20141 amod random,hexamers
R15097 T20141 T20139 pobj hexamers,with
R15098 T20142 T20124 prep according,Reverse
R15099 T20143 T20142 prep to,according
R15100 T20144 T20145 det the,manufacturer
R15101 T20145 T20147 poss manufacturer,protocol
R15102 T20146 T20145 case 's,manufacturer
R15103 T20147 T20143 pobj protocol,to
R15104 T20148 T20124 punct .,Reverse

GO-BP

Id Subject Object Predicate Lexical cue
T20045 23-32 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T20046 23-37 http://purl.obolibrary.org/obo/GO_0032774 denotes synthesis. RNA
T20047 128-149 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T20048 193-214 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse-transcription
T20049 136-149 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T20050 201-214 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T20042 0-33 Sentence denotes RNA isolation and cDNA synthesis.
T20043 34-127 Sentence denotes RNA was isolated using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol.
T20044 128-307 Sentence denotes Reverse transcription of human samples was performed with TaqMan reverse-transcription reagents (Applied Biosystems) with random hexamers according to the manufacturer's protocol.
T296 0-33 Sentence denotes RNA isolation and cDNA synthesis.
T297 34-127 Sentence denotes RNA was isolated using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol.
T298 128-307 Sentence denotes Reverse transcription of human samples was performed with TaqMan reverse-transcription reagents (Applied Biosystems) with random hexamers according to the manufacturer's protocol.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20149 186-192 Protein denotes TaqMan