PMC:2222968 / 39973-40280
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20080 | 181-185 | IN | denotes | with |
T20081 | 186-192 | NNP | denotes | TaqMan |
T20082 | 193-214 | NN | denotes | reverse-transcription |
T20083 | 215-223 | NN | denotes | reagents |
T20084 | 224-225 | -LRB- | denotes | ( |
T20085 | 225-232 | NNP | denotes | Applied |
T20086 | 233-243 | NNP | denotes | Biosystems |
T20087 | 243-244 | -RRB- | denotes | ) |
T20088 | 245-249 | IN | denotes | with |
T20089 | 250-256 | JJ | denotes | random |
T20090 | 257-265 | NN | denotes | hexamers |
T20091 | 266-275 | VB | denotes | according |
T20092 | 276-278 | TO | denotes | to |
T20093 | 279-282 | DT | denotes | the |
T20094 | 283-295 | NN | denotes | manufacturer |
T20095 | 295-297 | POS | denotes | 's |
T20096 | 298-306 | NN | denotes | protocol |
T20051 | 0-3 | NN | denotes | RNA |
T20052 | 4-13 | NN | denotes | isolation |
T20053 | 14-17 | CC | denotes | and |
T20054 | 18-22 | NN | denotes | cDNA |
T20055 | 23-32 | NN | denotes | synthesis |
T20056 | 34-37 | NN | denotes | RNA |
T20057 | 38-41 | VB | denotes | was |
T20058 | 42-50 | VB | denotes | isolated |
T20059 | 51-56 | VB | denotes | using |
T20060 | 57-60 | DT | denotes | the |
T20061 | 61-67 | NNP | denotes | RNeasy |
T20062 | 68-72 | NNP | denotes | Mini |
T20063 | 73-76 | NNP | denotes | Kit |
T20064 | 77-78 | -LRB- | denotes | ( |
T20065 | 78-84 | NN | denotes | Qiagen |
T20066 | 84-85 | -RRB- | denotes | ) |
T20067 | 86-95 | VB | denotes | according |
T20068 | 96-98 | TO | denotes | to |
T20069 | 99-102 | DT | denotes | the |
T20070 | 103-115 | NN | denotes | manufacturer |
T20071 | 115-117 | POS | denotes | 's |
T20072 | 118-126 | NN | denotes | protocol |
T20073 | 128-135 | JJ | denotes | Reverse |
T20074 | 136-149 | NN | denotes | transcription |
T20075 | 150-152 | IN | denotes | of |
T20076 | 153-158 | JJ | denotes | human |
T20077 | 159-166 | NN | denotes | samples |
T20078 | 167-170 | VB | denotes | was |
T20079 | 171-180 | VB | denotes | performed |
R15017 | T20058 | T20057 | arg2Of | isolated,was |
R15018 | T20059 | T20058 | arg3Of | using,isolated |
R15019 | T20059 | T20067 | arg1Of | using,according |
R15020 | T20063 | T20059 | arg2Of | Kit,using |
R15021 | T20063 | T20060 | arg1Of | Kit,the |
R15022 | T20063 | T20061 | arg1Of | Kit,RNeasy |
R15023 | T20063 | T20062 | arg1Of | Kit,Mini |
R15024 | T20063 | T20064 | arg1Of | Kit,( |
R15025 | T20065 | T20064 | arg2Of | Qiagen,( |
R15026 | T20066 | T20064 | arg3Of | ),( |
R15027 | T20068 | T20067 | arg2Of | to,according |
R15028 | T20070 | T20069 | arg1Of | manufacturer,the |
R15029 | T20070 | T20071 | arg2Of | manufacturer,'s |
R15030 | T20072 | T20068 | arg2Of | protocol,to |
R15031 | T20072 | T20071 | arg1Of | protocol,'s |
R15032 | T20074 | T20073 | arg1Of | transcription,Reverse |
R15033 | T20074 | T20075 | arg1Of | transcription,of |
R15034 | T20074 | T20078 | arg1Of | transcription,was |
R15035 | T20074 | T20079 | arg2Of | transcription,performed |
R15036 | T20077 | T20075 | arg2Of | samples,of |
R15037 | T20077 | T20076 | arg1Of | samples,human |
R15038 | T20079 | T20078 | arg2Of | performed,was |
R15039 | T20079 | T20080 | arg1Of | performed,with |
R15040 | T20079 | T20091 | arg1Of | performed,according |
R15041 | T20083 | T20080 | arg2Of | reagents,with |
R15042 | T20083 | T20081 | arg1Of | reagents,TaqMan |
R15043 | T20083 | T20082 | arg1Of | reagents,reverse-transcription |
R15044 | T20083 | T20084 | arg1Of | reagents,( |
R15045 | T20083 | T20088 | arg1Of | reagents,with |
R15046 | T20086 | T20084 | arg2Of | Biosystems,( |
R15047 | T20086 | T20085 | arg1Of | Biosystems,Applied |
R15048 | T20087 | T20084 | arg3Of | ),( |
R15049 | T20090 | T20088 | arg2Of | hexamers,with |
R15050 | T20090 | T20089 | arg1Of | hexamers,random |
R15051 | T20092 | T20091 | arg2Of | to,according |
R15052 | T20094 | T20093 | arg1Of | manufacturer,the |
R15053 | T20094 | T20095 | arg2Of | manufacturer,'s |
R15054 | T20096 | T20092 | arg2Of | protocol,to |
R15055 | T20096 | T20095 | arg1Of | protocol,'s |
R15011 | T20052 | T20051 | arg1Of | isolation,RNA |
R15012 | T20052 | T20053 | arg1Of | isolation,and |
R15013 | T20055 | T20053 | arg2Of | synthesis,and |
R15014 | T20055 | T20054 | arg1Of | synthesis,cDNA |
R15015 | T20056 | T20057 | arg1Of | RNA,was |
R15016 | T20056 | T20058 | arg2Of | RNA,isolated |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20100 | 0-3 | NNP | denotes | RNA |
T20101 | 4-13 | NN | denotes | isolation |
T20102 | 14-17 | CC | denotes | and |
T20103 | 18-22 | NNP | denotes | cDNA |
T20104 | 23-32 | NN | denotes | synthesis |
T20105 | 32-33 | . | denotes | . |
T20106 | 34-37 | NNP | denotes | RNA |
T20107 | 38-41 | VBD | denotes | was |
T20108 | 42-50 | VBN | denotes | isolated |
T20109 | 51-56 | VBG | denotes | using |
T20110 | 57-60 | DT | denotes | the |
T20111 | 61-67 | NNP | denotes | RNeasy |
T20112 | 68-72 | NNP | denotes | Mini |
T20113 | 73-76 | NNP | denotes | Kit |
T20114 | 77-78 | -LRB- | denotes | ( |
T20115 | 78-84 | NNP | denotes | Qiagen |
T20116 | 84-85 | -RRB- | denotes | ) |
T20117 | 86-95 | VBG | denotes | according |
T20118 | 96-98 | TO | denotes | to |
T20119 | 99-102 | DT | denotes | the |
T20120 | 103-115 | NN | denotes | manufacturer |
T20121 | 115-117 | POS | denotes | 's |
T20122 | 118-126 | NN | denotes | protocol |
T20123 | 126-127 | . | denotes | . |
T20124 | 128-135 | VB | denotes | Reverse |
T20125 | 136-149 | NN | denotes | transcription |
T20126 | 150-152 | IN | denotes | of |
T20127 | 153-158 | JJ | denotes | human |
T20128 | 159-166 | NNS | denotes | samples |
T20129 | 167-170 | VBD | denotes | was |
T20130 | 171-180 | VBN | denotes | performed |
T20131 | 181-185 | IN | denotes | with |
T20132 | 186-192 | NNP | denotes | TaqMan |
T20133 | 193-214 | NN | denotes | reverse-transcription |
T20134 | 215-223 | NNS | denotes | reagents |
T20135 | 224-225 | -LRB- | denotes | ( |
T20136 | 225-232 | NNP | denotes | Applied |
T20137 | 233-243 | NNPS | denotes | Biosystems |
T20138 | 243-244 | -RRB- | denotes | ) |
T20139 | 245-249 | IN | denotes | with |
T20140 | 250-256 | JJ | denotes | random |
T20141 | 257-265 | NNS | denotes | hexamers |
T20142 | 266-275 | VBG | denotes | according |
T20143 | 276-278 | TO | denotes | to |
T20144 | 279-282 | DT | denotes | the |
T20145 | 283-295 | NN | denotes | manufacturer |
T20146 | 295-297 | POS | denotes | 's |
T20147 | 298-306 | NN | denotes | protocol |
T20148 | 306-307 | . | denotes | . |
R15056 | T20100 | T20101 | compound | RNA,isolation |
R15057 | T20101 | T20101 | ROOT | isolation,isolation |
R15058 | T20102 | T20101 | cc | and,isolation |
R15059 | T20103 | T20104 | compound | cDNA,synthesis |
R15060 | T20104 | T20101 | conj | synthesis,isolation |
R15061 | T20105 | T20101 | punct | .,isolation |
R15062 | T20106 | T20108 | nsubjpass | RNA,isolated |
R15063 | T20107 | T20108 | auxpass | was,isolated |
R15064 | T20108 | T20108 | ROOT | isolated,isolated |
R15065 | T20109 | T20108 | advcl | using,isolated |
R15066 | T20110 | T20113 | det | the,Kit |
R15067 | T20111 | T20113 | compound | RNeasy,Kit |
R15068 | T20112 | T20113 | compound | Mini,Kit |
R15069 | T20113 | T20109 | dobj | Kit,using |
R15070 | T20114 | T20115 | punct | (,Qiagen |
R15071 | T20115 | T20113 | appos | Qiagen,Kit |
R15072 | T20116 | T20113 | punct | ),Kit |
R15073 | T20117 | T20108 | prep | according,isolated |
R15074 | T20118 | T20117 | prep | to,according |
R15075 | T20119 | T20120 | det | the,manufacturer |
R15076 | T20120 | T20122 | poss | manufacturer,protocol |
R15077 | T20121 | T20120 | case | 's,manufacturer |
R15078 | T20122 | T20118 | pobj | protocol,to |
R15079 | T20123 | T20108 | punct | .,isolated |
R15080 | T20124 | T20124 | ROOT | Reverse,Reverse |
R15081 | T20125 | T20130 | nsubjpass | transcription,performed |
R15082 | T20126 | T20125 | prep | of,transcription |
R15083 | T20127 | T20128 | amod | human,samples |
R15084 | T20128 | T20126 | pobj | samples,of |
R15085 | T20129 | T20130 | auxpass | was,performed |
R15086 | T20130 | T20124 | ccomp | performed,Reverse |
R15087 | T20131 | T20130 | prep | with,performed |
R15088 | T20132 | T20134 | nmod | TaqMan,reagents |
R15089 | T20133 | T20134 | compound | reverse-transcription,reagents |
R15090 | T20134 | T20131 | pobj | reagents,with |
R15091 | T20135 | T20137 | punct | (,Biosystems |
R15092 | T20136 | T20137 | compound | Applied,Biosystems |
R15093 | T20137 | T20134 | appos | Biosystems,reagents |
R15094 | T20138 | T20130 | punct | ),performed |
R15095 | T20139 | T20130 | prep | with,performed |
R15096 | T20140 | T20141 | amod | random,hexamers |
R15097 | T20141 | T20139 | pobj | hexamers,with |
R15098 | T20142 | T20124 | prep | according,Reverse |
R15099 | T20143 | T20142 | prep | to,according |
R15100 | T20144 | T20145 | det | the,manufacturer |
R15101 | T20145 | T20147 | poss | manufacturer,protocol |
R15102 | T20146 | T20145 | case | 's,manufacturer |
R15103 | T20147 | T20143 | pobj | protocol,to |
R15104 | T20148 | T20124 | punct | .,Reverse |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20045 | 23-32 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
T20046 | 23-37 | http://purl.obolibrary.org/obo/GO_0032774 | denotes | synthesis. RNA |
T20047 | 128-149 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | Reverse transcription |
T20048 | 193-214 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse-transcription |
T20049 | 136-149 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
T20050 | 201-214 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20042 | 0-33 | Sentence | denotes | RNA isolation and cDNA synthesis. |
T20043 | 34-127 | Sentence | denotes | RNA was isolated using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol. |
T20044 | 128-307 | Sentence | denotes | Reverse transcription of human samples was performed with TaqMan reverse-transcription reagents (Applied Biosystems) with random hexamers according to the manufacturer's protocol. |
T296 | 0-33 | Sentence | denotes | RNA isolation and cDNA synthesis. |
T297 | 34-127 | Sentence | denotes | RNA was isolated using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol. |
T298 | 128-307 | Sentence | denotes | Reverse transcription of human samples was performed with TaqMan reverse-transcription reagents (Applied Biosystems) with random hexamers according to the manufacturer's protocol. |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20149 | 186-192 | Protein | denotes | TaqMan |