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PMC:2222968 / 38861-39333 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-16517728-84705062 182-184 16517728 denotes 24
T56825 182-184 16517728 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19537 99-103 IN denotes into
T19538 104-107 DT denotes the
T19539 108-112 NN denotes pGL3
T19540 113-118 JJ denotes basic
T19541 119-125 NN denotes vector
T19542 126-127 -LRB- denotes (
T19543 127-134 NNP denotes Promega
T19544 135-142 NNP denotes Biotech
T19545 142-143 -RRB- denotes )
T19546 144-146 TO denotes to
T19547 147-155 VB denotes generate
T19548 156-159 DT denotes the
T19549 160-164 NN denotes pGL3
T19550 165-170 NN denotes FOXP3
T19551 171-180 CD denotes −511/+176
T19552 181-182 -LRB- denotes [
T19553 182-184 CD denotes 24
T19554 184-185 -RRB- denotes ]
T19555 187-200 JJ denotes Site-directed
T19556 201-212 NN denotes mutagenesis
T19557 213-215 IN denotes in
T19558 216-219 DT denotes the
T19559 220-225 NN denotes FOXP3
T19560 226-234 NN denotes promoter
T19561 235-241 NN denotes region
T19562 242-246 VB denotes were
T19563 247-257 VB denotes introduced
T19564 258-263 VB denotes using
T19565 264-267 DT denotes the
T19566 268-279 NN denotes QuickChange
T19567 280-283 NN denotes kit
T19568 284-285 -LRB- denotes (
T19569 285-295 NN denotes Stratagene
T19570 295-296 -RRB- denotes )
T19571 296-297 -COMMA- denotes ,
T19572 298-307 VB denotes according
T19573 308-310 TO denotes to
T19574 311-314 DT denotes the
T19575 315-327 NN denotes manufacturer
T19576 327-329 POS denotes 's
T19577 330-342 NN denotes instructions
T19578 344-347 DT denotes The
T19579 348-357 VB denotes following
T19580 358-364 NN denotes primer
T19581 365-368 CC denotes and
T19582 369-372 PRP-DOLLAR- denotes its
T19583 373-386 JJ denotes complementary
T19584 387-393 NN denotes strand
T19585 394-398 VB denotes were
T19586 399-403 VB denotes used
T19587 403-404 -COLON- denotes :
T19588 405-408 NN denotes GTT
T19589 409-412 NN denotes TCT
T19590 413-416 NN denotes CAT
T19591 417-420 NNP denotes GAG
T19592 421-424 NNP denotes CCC
T19593 425-428 NN denotes TAT
T19594 429-432 NNP denotes TAA
T19595 433-436 NNP denotes GTC
T19596 437-440 NNP denotes ATT
T19597 441-444 NNP denotes CTT
T19598 445-448 NNP denotes ACC
T19599 449-452 NN denotes TCT
T19600 453-456 NNP denotes CAC
T19601 457-460 NNP denotes CTC
T19602 461-464 NNP denotes TGT
T19603 465-468 NNP denotes GGT
T19604 469-471 NNP denotes GA
T19522 0-7 NN denotes Cloning
T19523 8-10 IN denotes of
T19524 11-14 DT denotes the
T19525 15-20 NN denotes FOXP3
T19526 21-29 NN denotes promoter
T19527 30-33 CC denotes and
T19528 34-46 NN denotes construction
T19529 47-49 IN denotes of
T19530 50-56 JJ denotes mutant
T19531 57-67 NN denotes constructs
T19532 69-72 DT denotes The
T19533 73-78 NN denotes FOXP3
T19534 79-87 NN denotes promoter
T19535 88-91 VB denotes was
T19536 92-98 VB denotes cloned
R14636 T19534 T19536 arg2Of promoter,cloned
R14637 T19536 T19535 arg2Of cloned,was
R14638 T19536 T19537 arg1Of cloned,into
R14639 T19536 T19546 modOf cloned,to
R14640 T19541 T19537 arg2Of vector,into
R14641 T19541 T19538 arg1Of vector,the
R14642 T19541 T19539 arg1Of vector,pGL3
R14643 T19541 T19540 arg1Of vector,basic
R14644 T19541 T19542 arg1Of vector,(
R14645 T19544 T19542 arg2Of Biotech,(
R14646 T19544 T19543 arg1Of Biotech,Promega
R14647 T19545 T19542 arg3Of ),(
R14648 T19547 T19546 arg1Of generate,to
R14649 T19550 T19547 arg2Of FOXP3,generate
R14650 T19550 T19548 arg1Of FOXP3,the
R14651 T19550 T19549 arg1Of FOXP3,pGL3
R14652 T19550 T19551 arg1Of FOXP3,−511/+176
R14653 T19550 T19552 arg1Of FOXP3,[
R14654 T19553 T19552 arg2Of 24,[
R14655 T19554 T19552 arg3Of ],[
R14656 T19556 T19555 arg1Of mutagenesis,Site-directed
R14657 T19556 T19557 arg1Of mutagenesis,in
R14658 T19556 T19562 arg1Of mutagenesis,were
R14659 T19556 T19563 arg2Of mutagenesis,introduced
R14660 T19561 T19557 arg2Of region,in
R14661 T19561 T19558 arg1Of region,the
R14662 T19561 T19559 arg1Of region,FOXP3
R14663 T19561 T19560 arg1Of region,promoter
R14664 T19563 T19562 arg2Of introduced,were
R14665 T19563 T19564 modOf introduced,using
R14666 T19563 T19571 arg1Of introduced,","
R14667 T19563 T19572 arg1Of introduced,according
R14668 T19567 T19564 arg2Of kit,using
R14669 T19567 T19565 arg1Of kit,the
R14670 T19567 T19566 arg1Of kit,QuickChange
R14671 T19567 T19568 arg1Of kit,(
R14672 T19569 T19568 arg2Of Stratagene,(
R14673 T19570 T19568 arg3Of ),(
R14674 T19573 T19572 arg2Of to,according
R14675 T19575 T19574 arg1Of manufacturer,the
R14676 T19575 T19576 arg2Of manufacturer,'s
R14677 T19577 T19573 arg2Of instructions,to
R14678 T19577 T19576 arg1Of instructions,'s
R14679 T19580 T19578 arg1Of primer,The
R14680 T19580 T19579 arg1Of primer,following
R14681 T19580 T19581 arg1Of primer,and
R14682 T19581 T19585 arg1Of and,were
R14683 T19581 T19586 arg2Of and,used
R14684 T19584 T19581 arg2Of strand,and
R14685 T19584 T19582 arg1Of strand,its
R14686 T19584 T19583 arg1Of strand,complementary
R14687 T19586 T19585 arg2Of used,were
R14688 T19586 T19587 arg1Of used,:
R14689 T19592 T19588 arg1Of CCC,GTT
R14690 T19592 T19589 arg1Of CCC,TCT
R14691 T19592 T19590 arg1Of CCC,CAT
R14692 T19592 T19591 arg1Of CCC,GAG
R14693 T19598 T19592 arg1Of ACC,CCC
R14694 T19598 T19593 arg1Of ACC,TAT
R14695 T19598 T19594 arg1Of ACC,TAA
R14696 T19598 T19595 arg1Of ACC,GTC
R14697 T19598 T19596 arg1Of ACC,ATT
R14698 T19598 T19597 arg1Of ACC,CTT
R14699 T19604 T19586 arg3Of GA,used
R14700 T19604 T19598 arg1Of GA,ACC
R14701 T19604 T19599 arg1Of GA,TCT
R14702 T19604 T19600 arg1Of GA,CAC
R14703 T19604 T19601 arg1Of GA,CTC
R14704 T19604 T19602 arg1Of GA,TGT
R14705 T19604 T19603 arg1Of GA,GGT
R14624 T19522 T19523 arg1Of Cloning,of
R14625 T19522 T19527 arg1Of Cloning,and
R14626 T19526 T19523 arg2Of promoter,of
R14627 T19526 T19524 arg1Of promoter,the
R14628 T19526 T19525 arg1Of promoter,FOXP3
R14629 T19528 T19527 arg2Of construction,and
R14630 T19528 T19529 arg1Of construction,of
R14631 T19531 T19529 arg2Of constructs,of
R14632 T19531 T19530 arg1Of constructs,mutant
R14633 T19534 T19532 arg1Of promoter,The
R14634 T19534 T19533 arg1Of promoter,FOXP3
R14635 T19534 T19535 arg1Of promoter,was

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19618 0-7 VBG denotes Cloning
T19619 8-10 IN denotes of
T19620 11-14 DT denotes the
T19621 15-20 CD denotes FOXP3
T19622 21-29 NN denotes promoter
T19623 30-33 CC denotes and
T19624 34-46 NN denotes construction
T19625 47-49 IN denotes of
T19626 50-56 JJ denotes mutant
T19627 57-67 NNS denotes constructs
T19628 67-68 . denotes .
T19629 69-72 DT denotes The
T19630 73-78 CD denotes FOXP3
T19631 79-87 NN denotes promoter
T19632 88-91 VBD denotes was
T19633 92-98 VBN denotes cloned
T19634 99-103 IN denotes into
T19635 104-107 DT denotes the
T19636 108-112 JJ denotes pGL3
T19637 113-118 JJ denotes basic
T19638 119-125 NN denotes vector
T19639 126-127 -LRB- denotes (
T19640 127-134 NNP denotes Promega
T19641 135-142 NNP denotes Biotech
T19642 142-143 -RRB- denotes )
T19643 144-146 TO denotes to
T19644 147-155 VB denotes generate
T19645 156-159 DT denotes the
T19646 160-164 JJ denotes pGL3
T19647 165-170 CD denotes FOXP3
T19648 171-172 CD denotes −
T19649 172-175 CD denotes 511
T19650 175-176 NN denotes /
T19651 176-180 CD denotes +176
T19652 181-182 NNP denotes [
T19653 182-184 CD denotes 24
T19654 184-185 NNP denotes ]
T19655 185-186 . denotes .
T19656 187-200 JJ denotes Site-directed
T19657 201-212 NNS denotes mutagenesis
T19658 213-215 IN denotes in
T19659 216-219 DT denotes the
T19660 220-225 CD denotes FOXP3
T19661 226-234 NN denotes promoter
T19662 235-241 NN denotes region
T19663 242-246 VBD denotes were
T19664 247-257 VBN denotes introduced
T19665 258-263 VBG denotes using
T19666 264-267 DT denotes the
T19667 268-279 NNP denotes QuickChange
T19668 280-283 NN denotes kit
T19669 284-285 -LRB- denotes (
T19670 285-295 NNP denotes Stratagene
T19671 295-296 -RRB- denotes )
T19672 296-297 , denotes ,
T19673 298-307 VBG denotes according
T19674 308-310 TO denotes to
T19675 311-314 DT denotes the
T19676 315-327 NN denotes manufacturer
T19677 327-329 POS denotes 's
T19678 330-342 NNS denotes instructions
T19679 342-343 . denotes .
T19680 344-347 DT denotes The
T19681 348-357 JJ denotes following
T19682 358-364 NN denotes primer
T19683 365-368 CC denotes and
T19684 369-372 PRP$ denotes its
T19685 373-386 JJ denotes complementary
T19686 387-393 NN denotes strand
T19687 394-398 VBD denotes were
T19688 399-403 VBN denotes used
T19689 403-404 : denotes :
T19690 405-408 NNP denotes GTT
T19691 409-412 NNP denotes TCT
T19692 413-416 NNP denotes CAT
T19693 417-420 NNP denotes GAG
T19694 421-424 NNP denotes CCC
T19695 425-428 NNP denotes TAT
T19696 429-432 NNP denotes TAA
T19697 433-436 NNP denotes GTC
T19698 437-440 NNP denotes ATT
T19699 441-444 NNP denotes CTT
T19700 445-448 NNP denotes ACC
T19701 449-452 NNP denotes TCT
T19702 453-456 NNP denotes CAC
T19703 457-460 NNP denotes CTC
T19704 461-464 NNP denotes TGT
T19705 465-468 NNP denotes GGT
T19706 469-472 NNP denotes GA.
R14706 T19618 T19618 ROOT Cloning,Cloning
R14707 T19619 T19618 prep of,Cloning
R14708 T19620 T19622 det the,promoter
R14709 T19621 T19622 nummod FOXP3,promoter
R14710 T19622 T19619 pobj promoter,of
R14711 T19623 T19622 cc and,promoter
R14712 T19624 T19622 conj construction,promoter
R14713 T19625 T19622 prep of,promoter
R14714 T19626 T19627 amod mutant,constructs
R14715 T19627 T19625 pobj constructs,of
R14716 T19628 T19618 punct .,Cloning
R14717 T19629 T19631 det The,promoter
R14718 T19630 T19631 nummod FOXP3,promoter
R14719 T19631 T19633 nsubjpass promoter,cloned
R14720 T19632 T19633 auxpass was,cloned
R14721 T19633 T19633 ROOT cloned,cloned
R14722 T19634 T19633 prep into,cloned
R14723 T19635 T19638 det the,vector
R14724 T19636 T19638 amod pGL3,vector
R14725 T19637 T19638 amod basic,vector
R14726 T19638 T19634 pobj vector,into
R14727 T19639 T19638 punct (,vector
R14728 T19640 T19641 compound Promega,Biotech
R14729 T19641 T19638 appos Biotech,vector
R14730 T19642 T19638 punct ),vector
R14731 T19643 T19644 aux to,generate
R14732 T19644 T19633 advcl generate,cloned
R14733 T19645 T19654 det the,]
R14734 T19646 T19654 amod pGL3,]
R14735 T19647 T19654 nummod FOXP3,]
R14736 T19648 T19654 nummod −,]
R14737 T19649 T19650 nummod 511,/
R14738 T19650 T19654 nsubj /,]
R14739 T19651 T19654 nummod +176,]
R14740 T19652 T19654 nmod [,]
R14741 T19653 T19654 nummod 24,]
R14742 T19654 T19644 dobj ],generate
R14743 T19655 T19633 punct .,cloned
R14744 T19656 T19657 amod Site-directed,mutagenesis
R14745 T19657 T19664 nsubjpass mutagenesis,introduced
R14746 T19658 T19657 prep in,mutagenesis
R14747 T19659 T19662 det the,region
R14748 T19660 T19662 nummod FOXP3,region
R14749 T19661 T19662 compound promoter,region
R14750 T19662 T19658 pobj region,in
R14751 T19663 T19664 auxpass were,introduced
R14752 T19664 T19664 ROOT introduced,introduced
R14753 T19665 T19664 advcl using,introduced
R14754 T19666 T19668 det the,kit
R14755 T19667 T19668 compound QuickChange,kit
R14756 T19668 T19665 dobj kit,using
R14757 T19669 T19668 punct (,kit
R14758 T19670 T19668 appos Stratagene,kit
R14759 T19671 T19668 punct ),kit
R14760 T19672 T19664 punct ",",introduced
R14761 T19673 T19664 prep according,introduced
R14762 T19674 T19673 prep to,according
R14763 T19675 T19676 det the,manufacturer
R14764 T19676 T19678 poss manufacturer,instructions
R14765 T19677 T19676 case 's,manufacturer
R14766 T19678 T19674 pobj instructions,to
R14767 T19679 T19664 punct .,introduced
R14768 T19680 T19682 det The,primer
R14769 T19681 T19682 amod following,primer
R14770 T19682 T19688 nsubjpass primer,used
R14771 T19683 T19682 cc and,primer
R14772 T19684 T19686 poss its,strand
R14773 T19685 T19686 amod complementary,strand
R14774 T19686 T19682 conj strand,primer
R14775 T19687 T19688 auxpass were,used
R14776 T19688 T19688 ROOT used,used
R14777 T19689 T19706 punct :,GA.
R14778 T19690 T19691 compound GTT,TCT
R14779 T19691 T19706 compound TCT,GA.
R14780 T19692 T19706 compound CAT,GA.
R14781 T19693 T19699 compound GAG,CTT
R14782 T19694 T19699 compound CCC,CTT
R14783 T19695 T19699 compound TAT,CTT
R14784 T19696 T19699 compound TAA,CTT
R14785 T19697 T19699 compound GTC,CTT
R14786 T19698 T19699 compound ATT,CTT
R14787 T19699 T19706 compound CTT,GA.
R14788 T19700 T19706 compound ACC,GA.
R14789 T19701 T19706 compound TCT,GA.
R14790 T19702 T19706 compound CAC,GA.
R14791 T19703 T19706 compound CTC,GA.
R14792 T19704 T19706 compound TGT,GA.
R14793 T19705 T19706 compound GGT,GA.
R14794 T19706 T19688 npadvmod GA.,used

GO-BP

Id Subject Object Predicate Lexical cue
T19520 413-416 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T19521 469-471 http://purl.obolibrary.org/obo/GO_0033968 denotes GA

GO-MF

Id Subject Object Predicate Lexical cue
T19711 413-416 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T19712 469-471 http://purl.obolibrary.org/obo/GO_0033968 denotes GA

GO-CC

Id Subject Object Predicate Lexical cue
T19713 421-424 http://purl.obolibrary.org/obo/GO_0030896 denotes CCC

sentences

Id Subject Object Predicate Lexical cue
T19516 0-68 Sentence denotes Cloning of the FOXP3 promoter and construction of mutant constructs.
T19517 69-186 Sentence denotes The FOXP3 promoter was cloned into the pGL3 basic vector (Promega Biotech) to generate the pGL3 FOXP3 −511/+176 [24].
T19518 187-343 Sentence denotes Site-directed mutagenesis in the FOXP3 promoter region were introduced using the QuickChange kit (Stratagene), according to the manufacturer's instructions.
T19519 344-472 Sentence denotes The following primer and its complementary strand were used: GTT TCT CAT GAG CCC TAT TAA GTC ATT CTT ACC TCT CAC CTC TGT GGT GA.
T287 0-68 Sentence denotes Cloning of the FOXP3 promoter and construction of mutant constructs.
T288 69-186 Sentence denotes The FOXP3 promoter was cloned into the pGL3 basic vector (Promega Biotech) to generate the pGL3 FOXP3 −511/+176 [24].
T289 187-343 Sentence denotes Site-directed mutagenesis in the FOXP3 promoter region were introduced using the QuickChange kit (Stratagene), according to the manufacturer's instructions.
T290 344-472 Sentence denotes The following primer and its complementary strand were used: GTT TCT CAT GAG CCC TAT TAA GTC ATT CTT ACC TCT CAC CTC TGT GGT GA.

events-check-again

Id Subject Object Predicate Lexical cue
T19733 15-20 Protein denotes FOXP3
T19734 73-78 Protein denotes FOXP3
T19735 165-170 Protein denotes FOXP3
T19736 220-225 Protein denotes FOXP3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19714 15-29 Protein denotes FOXP3 promoter
T19715 73-87 Protein denotes FOXP3 promoter
T19716 160-164 Protein denotes pGL3
T19717 165-170 Protein denotes FOXP3
T19718 220-234 Protein denotes FOXP3 promoter
T19719 405-420 Protein denotes GTT TCT CAT GAG
T19720 421-471 Protein denotes CCC TAT TAA GTC ATT CTT ACC TCT CAC CTC TGT GGT GA

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T19512 15-20 Protein denotes FOXP3
T19513 73-78 Protein denotes FOXP3
T19514 165-170 Protein denotes FOXP3
T19515 220-225 Protein denotes FOXP3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19605 15-20 Q9BZS1 denotes FOXP3
T19606 73-78 Q9BZS1 denotes FOXP3
T19607 165-170 Q9BZS1 denotes FOXP3
T19608 220-225 Q9BZS1 denotes FOXP3
T19609 417-420 P04591 denotes GAG
T19610 425-428 Q8UMQ1 denotes TAT
T19611 425-428 P04610 denotes TAT
T19612 425-428 P04608 denotes TAT
T19613 425-428 P04605 denotes TAT

test2

Id Subject Object Predicate Lexical cue
T19507 15-20 Protein denotes FOXP3
T19508 73-78 Protein denotes FOXP3
T19509 79-87 Entity denotes promoter
T19510 165-170 Protein denotes FOXP3
T19511 220-225 Protein denotes FOXP3
R14623 T19509 T19508 partOf promoter,FOXP3