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PMC:2222968 / 38323-38552 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19118 0-4 JJ denotes CD4+
T19119 5-12 JJ denotes CD45RA+
T19120 13-32 JJ denotes magnetically-sorted
T19121 33-34 -LRB- denotes (
T19122 34-40 NN denotes CD45RO
T19123 41-50 NN denotes depletion
T19124 50-51 -COMMA- denotes ,
T19125 52-56 NN denotes MACS
T19126 56-57 -COMMA- denotes ,
T19127 58-67 VB denotes according
T19128 68-70 TO denotes to
T19129 71-74 DT denotes the
T19130 75-83 NN denotes protocol
T19131 84-86 IN denotes of
T19132 87-90 DT denotes the
T19133 91-103 NN denotes manufacturer
T19134 103-104 -RRB- denotes )
T19135 105-110 NN denotes cells
T19136 111-115 VB denotes were
T19137 116-126 VB denotes stimulated
T19138 127-131 IN denotes with
T19139 132-143 VB denotes immobilized
T19140 144-155 JJ denotes plate-bound
T19141 156-164 NN denotes anti-CD3
T19142 165-166 -LRB- denotes (
T19143 166-167 CD denotes 1
T19144 168-173 NN denotes μg/ml
T19145 173-174 -COMMA- denotes ,
T19146 175-179 NN denotes Okt3
T19147 179-180 -COMMA- denotes ,
T19148 181-185 NN denotes IgG1
T19149 185-186 -RRB- denotes )
T19150 187-190 CC denotes and
T19151 191-200 JJ denotes anti-CD28
T19152 201-202 -LRB- denotes (
T19153 202-203 CD denotes 2
T19154 204-209 NN denotes μg/ml
T19155 209-210 -RRB- denotes )
T19156 211-213 IN denotes in
T19157 214-217 NN denotes Th1
T19158 218-228 NN denotes conditions
T19159 228-229 -COLON- denotes :
R14375 T19120 T19118 arg1Of magnetically-sorted,CD4+
R14376 T19120 T19119 arg1Of magnetically-sorted,CD45RA+
R14377 T19120 T19121 arg1Of magnetically-sorted,(
R14378 T19123 T19121 arg2Of depletion,(
R14379 T19123 T19122 arg1Of depletion,CD45RO
R14380 T19123 T19124 arg1Of depletion,","
R14381 T19123 T19126 arg1Of depletion,","
R14382 T19123 T19127 arg1Of depletion,according
R14383 T19125 T19124 arg2Of MACS,","
R14384 T19128 T19127 arg2Of to,according
R14385 T19130 T19128 arg2Of protocol,to
R14386 T19130 T19129 arg1Of protocol,the
R14387 T19130 T19131 arg1Of protocol,of
R14388 T19133 T19131 arg2Of manufacturer,of
R14389 T19133 T19132 arg1Of manufacturer,the
R14390 T19134 T19121 arg3Of ),(
R14391 T19135 T19120 arg1Of cells,magnetically-sorted
R14392 T19135 T19136 arg1Of cells,were
R14393 T19135 T19137 arg2Of cells,stimulated
R14394 T19137 T19136 arg2Of stimulated,were
R14395 T19137 T19138 arg1Of stimulated,with
R14396 T19137 T19159 arg1Of stimulated,:
R14397 T19141 T19139 arg2Of anti-CD3,immobilized
R14398 T19141 T19140 arg1Of anti-CD3,plate-bound
R14399 T19141 T19142 arg1Of anti-CD3,(
R14400 T19141 T19150 arg1Of anti-CD3,and
R14401 T19144 T19142 arg2Of μg/ml,(
R14402 T19144 T19143 arg1Of μg/ml,1
R14403 T19144 T19145 arg1Of μg/ml,","
R14404 T19144 T19147 arg1Of μg/ml,","
R14405 T19146 T19145 arg2Of Okt3,","
R14406 T19148 T19147 arg2Of IgG1,","
R14407 T19149 T19142 arg3Of ),(
R14408 T19150 T19138 arg2Of and,with
R14409 T19151 T19150 arg2Of anti-CD28,and
R14410 T19151 T19152 arg1Of anti-CD28,(
R14411 T19151 T19156 arg1Of anti-CD28,in
R14412 T19154 T19152 arg2Of μg/ml,(
R14413 T19154 T19153 arg1Of μg/ml,2
R14414 T19155 T19152 arg3Of ),(
R14415 T19158 T19156 arg2Of conditions,in
R14416 T19158 T19157 arg1Of conditions,Th1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19261 0-3 CD denotes CD4
T19262 3-4 CD denotes +
T19263 5-11 NNP denotes CD45RA
T19264 11-12 NNP denotes +
T19265 13-32 JJ denotes magnetically-sorted
T19266 33-34 -LRB- denotes (
T19267 34-40 CD denotes CD45RO
T19268 41-50 NN denotes depletion
T19269 50-51 , denotes ,
T19270 52-56 NNP denotes MACS
T19271 56-57 , denotes ,
T19272 58-67 VBG denotes according
T19273 68-70 TO denotes to
T19274 71-74 DT denotes the
T19275 75-83 NN denotes protocol
T19276 84-86 IN denotes of
T19277 87-90 DT denotes the
T19278 91-103 NN denotes manufacturer
T19279 103-104 -RRB- denotes )
T19280 105-110 NNS denotes cells
T19281 111-115 VBD denotes were
T19282 116-126 VBN denotes stimulated
T19283 127-131 IN denotes with
T19284 132-143 JJ denotes immobilized
T19285 144-155 JJ denotes plate-bound
T19286 156-164 JJ denotes anti-CD3
T19287 165-166 -LRB- denotes (
T19288 166-167 CD denotes 1
T19289 168-170 NN denotes μg
T19290 170-171 NN denotes /
T19291 171-173 NN denotes ml
T19292 173-174 , denotes ,
T19293 175-179 NNP denotes Okt3
T19294 179-180 , denotes ,
T19295 181-185 NNP denotes IgG1
T19296 185-186 -RRB- denotes )
T19297 187-190 CC denotes and
T19298 191-200 JJ denotes anti-CD28
T19299 201-202 -LRB- denotes (
T19300 202-203 CD denotes 2
T19301 204-206 NN denotes μg
T19302 206-207 NN denotes /
T19303 207-209 NN denotes ml
T19304 209-210 -RRB- denotes )
T19305 211-213 IN denotes in
T19306 214-217 JJ denotes Th1
T19307 218-228 NNS denotes conditions
T19308 228-229 : denotes :
R14490 T19261 T19265 nummod CD4,magnetically-sorted
R14491 T19262 T19265 nummod +,magnetically-sorted
R14492 T19263 T19265 compound CD45RA,magnetically-sorted
R14493 T19264 T19265 compound +,magnetically-sorted
R14494 T19265 T19272 meta magnetically-sorted,according
R14495 T19266 T19265 punct (,magnetically-sorted
R14496 T19267 T19268 nummod CD45RO,depletion
R14497 T19268 T19265 appos depletion,magnetically-sorted
R14498 T19269 T19268 punct ",",depletion
R14499 T19270 T19268 appos MACS,depletion
R14500 T19271 T19265 punct ",",magnetically-sorted
R14501 T19272 T19282 prep according,stimulated
R14502 T19273 T19272 prep to,according
R14503 T19274 T19275 det the,protocol
R14504 T19275 T19273 pobj protocol,to
R14505 T19276 T19275 prep of,protocol
R14506 T19277 T19278 det the,manufacturer
R14507 T19278 T19276 pobj manufacturer,of
R14508 T19279 T19282 punct ),stimulated
R14509 T19280 T19282 nsubjpass cells,stimulated
R14510 T19281 T19282 auxpass were,stimulated
R14511 T19282 T19282 ROOT stimulated,stimulated
R14512 T19283 T19282 prep with,stimulated
R14513 T19284 T19286 amod immobilized,anti-CD3
R14514 T19285 T19286 amod plate-bound,anti-CD3
R14515 T19286 T19283 pobj anti-CD3,with
R14516 T19287 T19291 punct (,ml
R14517 T19288 T19289 nummod 1,μg
R14518 T19289 T19291 compound μg,ml
R14519 T19290 T19291 compound /,ml
R14520 T19291 T19286 appos ml,anti-CD3
R14521 T19292 T19291 punct ",",ml
R14522 T19293 T19291 conj Okt3,ml
R14523 T19294 T19293 punct ",",Okt3
R14524 T19295 T19293 appos IgG1,Okt3
R14525 T19296 T19293 punct ),Okt3
R14526 T19297 T19293 cc and,Okt3
R14527 T19298 T19293 conj anti-CD28,Okt3
R14528 T19299 T19303 punct (,ml
R14529 T19300 T19301 nummod 2,μg
R14530 T19301 T19303 nmod μg,ml
R14531 T19302 T19303 compound /,ml
R14532 T19303 T19298 appos ml,anti-CD28
R14533 T19304 T19303 punct ),ml
R14534 T19305 T19298 prep in,anti-CD28
R14535 T19306 T19307 amod Th1,conditions
R14536 T19307 T19305 pobj conditions,in
R14537 T19308 T19291 punct :,ml

GO-CC

Id Subject Object Predicate Lexical cue
T19411 105-110 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T19413 181-185 http://purl.obolibrary.org/obo/GO_0071735 denotes IgG1

sentences

Id Subject Object Predicate Lexical cue
T19107 0-229 Sentence denotes CD4+ CD45RA+ magnetically-sorted (CD45RO depletion, MACS, according to the protocol of the manufacturer) cells were stimulated with immobilized plate-bound anti-CD3 (1 μg/ml, Okt3, IgG1) and anti-CD28 (2 μg/ml) in Th1 conditions:
T282 0-229 Sentence denotes CD4+ CD45RA+ magnetically-sorted (CD45RO depletion, MACS, according to the protocol of the manufacturer) cells were stimulated with immobilized plate-bound anti-CD3 (1 μg/ml, Okt3, IgG1) and anti-CD28 (2 μg/ml) in Th1 conditions:

events-check-again

Id Subject Object Predicate Lexical cue
T19471 0-3 Protein denotes CD4
T19472 5-11 Protein denotes CD45RA
T19473 34-40 Protein denotes CD45RO
T19474 41-50 Negative_regulation denotes depletion
T19475 161-164 Protein denotes CD3
T19476 196-200 Protein denotes CD28
R14621 T19473 T19474 themeOf CD45RO,depletion

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19414 0-3 Protein denotes CD4
T19415 5-12 Protein denotes CD45RA+
T19416 34-40 Protein denotes CD45RO
T19417 175-179 Protein denotes Okt3
T19418 181-185 Protein denotes IgG1
T19419 214-217 Protein denotes Th1
T19422 41-50 Negative_regulation denotes depletion
R14617 T19416 T19422 themeOf CD45RO,depletion

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T19090 0-3 Protein denotes CD4
T19091 5-11 Protein denotes CD45RA
T19092 34-40 Protein denotes CD45RO
T19093 41-50 Negative_regulation denotes depletion
T19094 161-164 Protein denotes CD3
T19095 196-200 Protein denotes CD28
R14370 T19092 T19093 themeOf CD45RO,depletion

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19228 0-3 P01730 denotes CD4
T19229 5-11 P08575 denotes CD45RA
T19230 34-40 P08575 denotes CD45RO
T19231 161-164 P07766 denotes CD3
T19232 161-164 P20963 denotes CD3
T19233 161-164 P09693 denotes CD3
T19234 161-164 P04234 denotes CD3
T19235 196-200 P10747 denotes CD28

test2

Id Subject Object Predicate Lexical cue
T19074 0-3 Protein denotes CD4
T19075 5-11 Protein denotes CD45RA
T19076 34-40 Protein denotes CD45RO
T19077 41-50 Negative_regulation denotes depletion
T19078 161-164 Protein denotes CD3
T19079 196-200 Protein denotes CD28
R14369 T19076 T19077 themeOf CD45RO,depletion