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PMC:2222968 / 36227-36655 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-16387593-84705060 326-328 16387593 denotes 61
T86850 326-328 16387593 denotes 61

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18366 0-3 DT denotes The
T18367 4-7 NNP denotes PCR
T18368 8-15 NNS denotes primers
T18369 16-19 CC denotes and
T18370 20-26 NNS denotes probes
T18371 27-31 VBD denotes were
T18372 32-40 VBN denotes designed
T18373 41-46 VBN denotes based
T18374 47-49 IN denotes on
T18375 50-53 DT denotes the
T18376 54-63 NNS denotes sequences
T18377 64-72 VBD denotes reported
T18378 73-75 IN denotes in
T18379 76-83 NNP denotes GenBank
T18380 84-88 IN denotes with
T18381 89-92 DT denotes the
T18382 93-99 NNP denotes Primer
T18383 100-107 NNP denotes Express
T18384 108-116 NN denotes software
T18385 117-124 NN denotes version
T18386 125-128 CD denotes 1.2
T18387 129-130 -LRB- denotes (
T18388 130-137 NNP denotes Applied
T18389 138-148 NNPS denotes Biosystems
T18390 148-149 -RRB- denotes )
T18391 150-152 IN denotes as
T18392 153-160 VBZ denotes follows
T18393 160-161 : denotes :
T18394 162-167 CD denotes FOXP3
T18395 168-175 RB denotes forward
T18396 176-182 NN denotes primer
T18397 183-184 CD denotes 5
T18398 184-185 SYM denotes ′
T18399 185-186 : denotes -
T18400 186-189 NNP denotes GAA
T18401 190-193 NNP denotes ACA
T18402 194-197 NNP denotes GCA
T18403 198-201 NNP denotes CAT
T18404 202-205 NNP denotes TCC
T18405 206-209 NNP denotes CAG
T18406 210-213 NNP denotes AGT
T18407 214-218 JJ denotes TC-3
T18408 218-219 NN denotes ′
T18409 219-220 : denotes ;
T18410 221-226 CD denotes FOXP3
T18411 227-234 NN denotes reverse
T18412 235-241 NN denotes primer
T18413 242-243 CD denotes 5
T18414 243-244 SYM denotes ′
T18415 244-245 : denotes -
T18416 245-248 NNP denotes ATG
T18417 249-252 NNP denotes GCC
T18418 253-256 NNP denotes CAG
T18419 257-260 NNP denotes CGG
T18420 261-264 NNP denotes ATG
T18421 265-269 JJ denotes AG-3
T18422 269-270 NN denotes ′
T18423 270-271 : denotes ;
T18424 272-277 NNP denotes EF-1α
T18425 278-285 RB denotes forward
T18426 286-292 JJR denotes primer
T18427 293-296 CC denotes and
T18428 297-304 VB denotes reverse
T18429 305-311 NN denotes primer
T18430 312-314 IN denotes as
T18431 315-324 VBN denotes described
T18432 325-326 NNP denotes [
T18433 326-328 CD denotes 61
T18434 328-329 NNP denotes ]
T18435 329-330 : denotes ;
T18436 331-336 NNP denotes GATA3
T18437 337-344 RB denotes forward
T18438 345-351 JJR denotes primer
T18439 352-353 CD denotes 5
T18440 353-354 SYM denotes ′
T18441 354-355 : denotes -
T18442 355-358 NNP denotes GCG
T18443 359-362 NNP denotes GGC
T18444 363-366 NNP denotes TCT
T18445 367-370 NNP denotes ATC
T18446 371-374 NNP denotes ACA
T18447 375-378 NNP denotes AAA
T18448 379-384 CD denotes TGA-3
T18449 384-385 NN denotes ′
T18450 386-389 CC denotes and
T18451 390-393 NN denotes rwd
T18452 394-395 CD denotes 5
T18453 395-396 SYM denotes ′
T18454 396-397 : denotes -
T18455 397-400 NNP denotes GCT
T18456 401-404 NNP denotes CTC
T18457 405-408 NNP denotes CTG
T18458 409-412 NNP denotes GCT
T18459 413-416 NNP denotes GCA
T18460 417-420 NNP denotes GAC
T18461 421-426 JJ denotes AGC-3
T18462 426-427 NN denotes ′
T18463 427-428 . denotes .
R13829 T18366 T18368 det The,primers
R13830 T18367 T18368 compound PCR,primers
R13831 T18368 T18372 nsubjpass primers,designed
R13832 T18369 T18368 cc and,primers
R13833 T18370 T18368 conj probes,primers
R13834 T18371 T18372 auxpass were,designed
R13835 T18372 T18372 ROOT designed,designed
R13836 T18373 T18372 prep based,designed
R13837 T18374 T18373 prep on,based
R13838 T18375 T18376 det the,sequences
R13839 T18376 T18374 pobj sequences,on
R13840 T18377 T18376 acl reported,sequences
R13841 T18378 T18377 prep in,reported
R13842 T18379 T18378 pobj GenBank,in
R13843 T18380 T18377 prep with,reported
R13844 T18381 T18385 det the,version
R13845 T18382 T18383 compound Primer,Express
R13846 T18383 T18385 compound Express,version
R13847 T18384 T18385 compound software,version
R13848 T18385 T18380 pobj version,with
R13849 T18386 T18385 nummod 1.2,version
R13850 T18387 T18389 punct (,Biosystems
R13851 T18388 T18389 compound Applied,Biosystems
R13852 T18389 T18385 appos Biosystems,version
R13853 T18390 T18377 punct ),reported
R13854 T18391 T18392 mark as,follows
R13855 T18392 T18372 advcl follows,designed
R13856 T18393 T18372 punct :,designed
R13857 T18394 T18396 nummod FOXP3,primer
R13858 T18395 T18396 amod forward,primer
R13859 T18396 T18396 ROOT primer,primer
R13860 T18397 T18438 meta 5,primer
R13861 T18398 T18400 punct ′,GAA
R13862 T18399 T18400 punct -,GAA
R13863 T18400 T18438 ccomp GAA,primer
R13864 T18401 T18402 compound ACA,GCA
R13865 T18402 T18426 npadvmod GCA,primer
R13866 T18403 T18426 nmod CAT,primer
R13867 T18404 T18408 nmod TCC,′
R13868 T18405 T18408 nmod CAG,′
R13869 T18406 T18408 nmod AGT,′
R13870 T18407 T18408 amod TC-3,′
R13871 T18408 T18403 appos ′,CAT
R13872 T18409 T18403 punct ;,CAT
R13873 T18410 T18412 nummod FOXP3,primer
R13874 T18411 T18412 compound reverse,primer
R13875 T18412 T18403 appos primer,CAT
R13876 T18413 T18426 nummod 5,primer
R13877 T18414 T18426 punct ′,primer
R13878 T18415 T18426 punct -,primer
R13879 T18416 T18417 compound ATG,GCC
R13880 T18417 T18426 npadvmod GCC,primer
R13881 T18418 T18422 nmod CAG,′
R13882 T18419 T18422 nmod CGG,′
R13883 T18420 T18422 nmod ATG,′
R13884 T18421 T18422 amod AG-3,′
R13885 T18422 T18417 appos ′,GCC
R13886 T18423 T18417 punct ;,GCC
R13887 T18424 T18417 conj EF-1α,GCC
R13888 T18425 T18417 advmod forward,GCC
R13889 T18426 T18400 amod primer,GAA
R13890 T18427 T18426 cc and,primer
R13891 T18428 T18426 conj reverse,primer
R13892 T18429 T18428 dobj primer,reverse
R13893 T18430 T18431 mark as,described
R13894 T18431 T18438 advcl described,primer
R13895 T18432 T18434 nmod [,]
R13896 T18433 T18434 nummod 61,]
R13897 T18434 T18431 dobj ],described
R13898 T18435 T18438 punct ;,primer
R13899 T18436 T18438 nsubj GATA3,primer
R13900 T18437 T18438 advmod forward,primer
R13901 T18438 T18438 ROOT primer,primer
R13902 T18439 T18462 nummod 5,′
R13903 T18440 T18444 punct ′,TCT
R13904 T18441 T18444 punct -,TCT
R13905 T18442 T18444 compound GCG,TCT
R13906 T18443 T18444 compound GGC,TCT
R13907 T18444 T18462 nmod TCT,′
R13908 T18445 T18446 compound ATC,ACA
R13909 T18446 T18447 compound ACA,AAA
R13910 T18447 T18462 dep AAA,′
R13911 T18448 T18449 nummod TGA-3,′
R13912 T18449 T18462 nmod ′,′
R13913 T18450 T18449 cc and,′
R13914 T18451 T18449 conj rwd,′
R13915 T18452 T18451 nummod 5,rwd
R13916 T18453 T18462 punct ′,′
R13917 T18454 T18455 punct -,GCT
R13918 T18455 T18462 compound GCT,′
R13919 T18456 T18462 compound CTC,′
R13920 T18457 T18462 compound CTG,′
R13921 T18458 T18462 nmod GCT,′
R13922 T18459 T18460 compound GCA,GAC
R13923 T18460 T18462 nmod GAC,′
R13924 T18461 T18462 amod AGC-3,′
R13925 T18462 T18438 dep ′,primer
R13926 T18463 T18438 punct .,primer

GO-BP

Id Subject Object Predicate Lexical cue
T18337 194-197 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18338 413-416 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18339 198-201 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT

GO-MF

Id Subject Object Predicate Lexical cue
T18701 194-197 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18702 413-416 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18703 198-201 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT

GO-CC

Id Subject Object Predicate Lexical cue
T18709 202-205 http://purl.obolibrary.org/obo/GO_0005579 denotes TCC

sentences

Id Subject Object Predicate Lexical cue
T18329 0-428 Sentence denotes The PCR primers and probes were designed based on the sequences reported in GenBank with the Primer Express software version 1.2 (Applied Biosystems) as follows: FOXP3 forward primer 5′-GAA ACA GCA CAT TCC CAG AGT TC-3′; FOXP3 reverse primer 5′-ATG GCC CAG CGG ATG AG-3′; EF-1α forward primer and reverse primer as described [61]; GATA3 forward primer 5′-GCG GGC TCT ATC ACA AAA TGA-3′ and rwd 5′-GCT CTC CTG GCT GCA GAC AGC-3′.
T269 0-428 Sentence denotes The PCR primers and probes were designed based on the sequences reported in GenBank with the Primer Express software version 1.2 (Applied Biosystems) as follows: FOXP3 forward primer 5′-GAA ACA GCA CAT TCC CAG AGT TC-3′; FOXP3 reverse primer 5′-ATG GCC CAG CGG ATG AG-3′; EF-1α forward primer and reverse primer as described [61]; GATA3 forward primer 5′-GCG GGC TCT ATC ACA AAA TGA-3′ and rwd 5′-GCT CTC CTG GCT GCA GAC AGC-3′.

events-check-again

Id Subject Object Predicate Lexical cue
T18746 162-167 Protein denotes FOXP3
T18747 221-226 Protein denotes FOXP3
T18748 272-277 Protein denotes EF-1α
T18749 331-336 Protein denotes GATA3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18711 76-83 Protein denotes GenBank
T18712 162-167 Protein denotes FOXP3
T18713 190-205 Protein denotes ACA GCA CAT TCC
T18714 206-213 Protein denotes CAG AGT
T18715 221-226 Protein denotes FOXP3
T18716 272-277 Protein denotes EF-1α
T18717 331-336 Protein denotes GATA3

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18320 162-167 Protein denotes FOXP3
T18321 221-226 Protein denotes FOXP3
T18322 272-277 Protein denotes EF-1α
T18323 331-336 Protein denotes GATA3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18343 162-167 Q9BZS1 denotes FOXP3
T18344 221-226 Q9BZS1 denotes FOXP3
T18345 331-336 P23771 denotes GATA3

test2

Id Subject Object Predicate Lexical cue
T18312 162-167 Protein denotes FOXP3
T18313 221-226 Protein denotes FOXP3
T18314 272-277 Protein denotes EF-1α
T18315 331-336 Protein denotes GATA3