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PMC:2222968 / 35171-35780 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-11441076-84705058 292-294 11441076 denotes 22
T68613 292-294 11441076 denotes 22

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17778 0-4 NN denotes Mice
T17779 6-12 JJ denotes Normal
T17780 13-15 NN denotes B6
T17781 16-20 NN denotes mice
T17782 21-25 VB denotes were
T17783 26-35 VB denotes purchased
T17784 36-40 IN denotes from
T17785 41-44 DT denotes the
T17786 45-52 NNP denotes Jackson
T17787 53-65 NNP denotes Laboratories
T17788 66-67 -LRB- denotes (
T17789 67-70 NNP denotes Bar
T17790 71-77 NNP denotes Harbor
T17791 77-78 -COMMA- denotes ,
T17792 79-84 NNP denotes Maine
T17793 84-85 -RRB- denotes )
T17794 87-97 JJ denotes Transgenic
T17795 98-105 NN denotes DO11.10
T17796 106-110 NN denotes mice
T17797 110-111 -COMMA- denotes ,
T17798 112-122 VB denotes expressing
T17799 123-124 DT denotes a
T17800 125-126 NN denotes T
T17801 127-131 NN denotes cell
T17802 132-140 NN denotes receptor
T17803 141-144 IN denotes for
T17804 145-155 NN denotes OVA323–339
T17805 156-163 NN denotes peptide
T17806 164-166 IN denotes in
T17807 167-170 DT denotes the
T17808 171-178 NN denotes context
T17809 179-181 IN denotes of
T17810 182-186 NN denotes H-2d
T17811 186-187 -COMMA- denotes ,
T17812 188-192 VB denotes were
T17813 193-204 VB denotes backcrossed
T17814 205-209 IN denotes with
T17815 210-214 NN denotes mice
T17816 215-225 VB denotes expressing
T17817 226-232 NN denotes GATA-3
T17818 232-233 -COMMA- denotes ,
T17819 234-240 VB denotes driven
T17820 241-243 IN denotes by
T17821 244-247 DT denotes the
T17822 248-253 JJ denotes human
T17823 254-257 NN denotes CD2
T17824 258-263 NN denotes locus
T17825 264-271 NN denotes control
T17826 272-278 NN denotes region
T17827 279-280 -LRB- denotes (
T17828 280-289 NN denotes CD2-GATA3
T17829 289-290 -RRB- denotes )
T17830 291-292 -LRB- denotes [
T17831 292-294 CD denotes 22
T17832 294-295 -RRB- denotes ]
T17833 295-296 -COMMA- denotes ,
T17834 297-306 VB denotes resulting
T17835 307-309 IN denotes in
T17836 310-327 NN denotes DO11.10xCD2-GATA3
T17837 328-332 NN denotes mice
T17838 334-338 NN denotes Mice
T17839 339-343 VB denotes used
T17840 344-347 IN denotes for
T17841 348-359 NN denotes experiments
T17842 360-364 VB denotes were
T17843 365-376 VB denotes backcrossed
T17844 377-379 IN denotes on
T17845 380-381 DT denotes a
T17846 382-388 NN denotes BALB/c
T17847 389-399 NN denotes background
T17848 400-403 IN denotes for
T17849 404-405 DT denotes a
T17850 406-413 NN denotes minimum
T17851 414-416 IN denotes of
T17852 417-422 CD denotes eight
T17853 423-434 NN denotes generations
T17854 435-438 CC denotes and
T17855 439-443 VB denotes used
T17856 444-446 IN denotes at
T17857 447-449 DT denotes an
T17858 450-453 NN denotes age
T17859 454-456 IN denotes of
T17860 457-461 CD denotes 8–12
T17861 462-464 NN denotes wk
T17862 466-470 NN denotes Mice
T17863 471-475 VB denotes were
T17864 476-482 VB denotes housed
T17865 483-488 IN denotes under
T17866 489-497 JJ denotes specific
T17867 498-511 JJ denotes pathogen-free
T17868 512-522 NN denotes conditions
T17869 523-526 CC denotes and
T17870 527-530 DT denotes all
T17871 531-537 NN denotes animal
T17872 538-545 NN denotes studies
T17873 546-550 VB denotes were
T17874 551-560 VB denotes performed
T17875 561-570 VB denotes according
T17876 571-573 TO denotes to
T17877 574-587 JJ denotes institutional
T17878 588-591 CC denotes and
T17879 592-597 NN denotes state
T17880 598-608 NN denotes guidelines
R13418 T17781 T17779 arg1Of mice,Normal
R13419 T17781 T17780 arg1Of mice,B6
R13420 T17781 T17782 arg1Of mice,were
R13421 T17781 T17783 arg2Of mice,purchased
R13423 T17783 T17782 arg2Of purchased,were
R13428 T17790 T17788 arg2Of Harbor,(
R13429 T17790 T17789 arg1Of Harbor,Bar
R13430 T17790 T17791 arg1Of Harbor,","
R13431 T17792 T17791 arg2Of Maine,","
R13432 T17793 T17788 arg3Of ),(
R13433 T17796 T17794 arg1Of mice,Transgenic
R13434 T17796 T17795 arg1Of mice,DO11.10
R13435 T17796 T17797 arg1Of mice,","
R13436 T17796 T17798 arg1Of mice,expressing
R13437 T17796 T17812 arg1Of mice,were
R13438 T17796 T17813 arg2Of mice,backcrossed
R13439 T17802 T17798 arg2Of receptor,expressing
R13440 T17802 T17799 arg1Of receptor,a
R13441 T17802 T17800 arg1Of receptor,T
R13442 T17802 T17801 arg1Of receptor,cell
R13443 T17802 T17803 arg1Of receptor,for
R13444 T17805 T17803 arg2Of peptide,for
R13445 T17805 T17804 arg1Of peptide,OVA323–339
R13446 T17805 T17806 arg1Of peptide,in
R13447 T17808 T17806 arg2Of context,in
R13448 T17808 T17807 arg1Of context,the
R13449 T17808 T17809 arg1Of context,of
R13450 T17810 T17809 arg2Of H-2d,of
R13451 T17813 T17811 arg1Of backcrossed,","
R13452 T17813 T17812 arg2Of backcrossed,were
R13453 T17813 T17814 arg1Of backcrossed,with
R13454 T17813 T17830 arg1Of backcrossed,[
R13455 T17813 T17833 arg1Of backcrossed,","
R13456 T17813 T17834 modOf backcrossed,resulting
R13457 T17815 T17814 arg2Of mice,with
R13458 T17815 T17816 arg1Of mice,expressing
R13459 T17815 T17818 arg1Of mice,","
R13460 T17815 T17819 arg2Of mice,driven
R13461 T17817 T17816 arg2Of GATA-3,expressing
R13462 T17826 T17819 arg1Of region,driven
R13463 T17826 T17820 arg2Of region,by
R13464 T17826 T17821 arg1Of region,the
R13465 T17826 T17822 arg1Of region,human
R13466 T17826 T17823 arg1Of region,CD2
R13467 T17826 T17824 arg1Of region,locus
R13468 T17826 T17825 arg1Of region,control
R13469 T17826 T17827 arg1Of region,(
R13470 T17828 T17827 arg2Of CD2-GATA3,(
R13471 T17829 T17827 arg3Of ),(
R13472 T17831 T17830 arg2Of 22,[
R13473 T17832 T17830 arg3Of ],[
R13474 T17834 T17835 arg1Of resulting,in
R13475 T17837 T17835 arg2Of mice,in
R13476 T17837 T17836 arg1Of mice,DO11.10xCD2-GATA3
R13477 T17838 T17839 arg2Of Mice,used
R13478 T17838 T17842 arg1Of Mice,were
R13479 T17838 T17843 arg2Of Mice,backcrossed
R13480 T17838 T17855 arg2Of Mice,used
R13481 T17839 T17840 arg1Of used,for
R13482 T17841 T17840 arg2Of experiments,for
R13483 T17843 T17844 arg1Of backcrossed,on
R13484 T17843 T17854 arg1Of backcrossed,and
R13485 T17847 T17844 arg2Of background,on
R13486 T17847 T17845 arg1Of background,a
R13487 T17847 T17846 arg1Of background,BALB/c
R13488 T17847 T17848 arg1Of background,for
R13489 T17850 T17848 arg2Of minimum,for
R13490 T17850 T17849 arg1Of minimum,a
R13491 T17850 T17851 arg1Of minimum,of
R13492 T17853 T17851 arg2Of generations,of
R13493 T17853 T17852 arg1Of generations,eight
R13494 T17854 T17842 arg2Of and,were
R13495 T17855 T17854 arg2Of used,and
R13496 T17855 T17856 arg1Of used,at
R13497 T17858 T17856 arg2Of age,at
R13498 T17858 T17857 arg1Of age,an
R13499 T17858 T17859 arg1Of age,of
R13500 T17861 T17859 arg2Of wk,of
R13501 T17861 T17860 arg1Of wk,8–12
R13502 T17862 T17863 arg1Of Mice,were
R13503 T17862 T17864 arg2Of Mice,housed
R13504 T17864 T17863 arg2Of housed,were
R13505 T17864 T17865 arg1Of housed,under
R13506 T17864 T17869 arg1Of housed,and
R13507 T17868 T17865 arg2Of conditions,under
R13508 T17868 T17866 arg1Of conditions,specific
R13509 T17868 T17867 arg1Of conditions,pathogen-free
R13510 T17872 T17870 arg1Of studies,all
R13511 T17872 T17871 arg1Of studies,animal
R13512 T17872 T17873 arg1Of studies,were
R13513 T17872 T17874 arg2Of studies,performed
R13514 T17874 T17869 arg2Of performed,and
R13515 T17874 T17873 arg2Of performed,were
R13516 T17874 T17875 arg1Of performed,according
R13517 T17876 T17875 arg2Of to,according
R13518 T17877 T17878 arg1Of institutional,and
R13519 T17879 T17878 arg2Of state,and
R13520 T17880 T17876 arg2Of guidelines,to
R13521 T17880 T17877 arg1Of guidelines,institutional
R13522 T17880 T17879 arg1Of guidelines,state
R13422 T17783 T17784 arg1Of purchased,from
R13424 T17787 T17784 arg2Of Laboratories,from
R13425 T17787 T17785 arg1Of Laboratories,the
R13426 T17787 T17786 arg1Of Laboratories,Jackson
R13427 T17787 T17788 arg1Of Laboratories,(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17891 0-4 NNP denotes Mice
T17892 4-5 . denotes .
T17893 6-12 JJ denotes Normal
T17894 13-15 NN denotes B6
T17895 16-20 NNS denotes mice
T17896 21-25 VBD denotes were
T17897 26-35 VBN denotes purchased
T17898 36-40 IN denotes from
T17899 41-44 DT denotes the
T17900 45-52 NNP denotes Jackson
T17901 53-65 NNP denotes Laboratories
T17902 66-67 -LRB- denotes (
T17903 67-70 NNP denotes Bar
T17904 71-77 NNP denotes Harbor
T17905 77-78 , denotes ,
T17906 79-84 NNP denotes Maine
T17907 84-85 -RRB- denotes )
T17908 85-86 . denotes .
T17909 87-97 NNP denotes Transgenic
T17910 98-102 NNP denotes DO11
T17911 102-105 CD denotes .10
T17912 106-110 NNS denotes mice
T17913 110-111 , denotes ,
T17914 112-122 VBG denotes expressing
T17915 123-124 DT denotes a
T17916 125-126 NNP denotes T
T17917 127-131 NN denotes cell
T17918 132-140 NN denotes receptor
T17919 141-144 IN denotes for
T17920 145-151 NNP denotes OVA323
T17921 152-155 CD denotes 339
T17922 156-163 NN denotes peptide
T17923 164-166 IN denotes in
T17924 167-170 DT denotes the
T17925 171-178 NN denotes context
T17926 179-181 IN denotes of
T17927 182-186 JJ denotes H-2d
T17928 186-187 , denotes ,
T17929 188-192 VBD denotes were
T17930 193-204 VBN denotes backcrossed
T17931 205-209 IN denotes with
T17932 210-214 NNS denotes mice
T17933 215-225 VBG denotes expressing
T17934 226-232 NNP denotes GATA-3
T17935 232-233 , denotes ,
T17936 234-240 VBN denotes driven
T17937 241-243 IN denotes by
T17938 244-247 DT denotes the
T17939 248-253 JJ denotes human
T17940 254-257 NNP denotes CD2
T17941 258-263 NN denotes locus
T17942 264-271 NN denotes control
T17943 272-278 NN denotes region
T17944 279-280 -LRB- denotes (
T17945 280-289 NN denotes CD2-GATA3
T17946 289-290 -RRB- denotes )
T17947 291-292 NNP denotes [
T17948 292-294 CD denotes 22
T17949 294-295 NNP denotes ]
T17950 295-296 , denotes ,
T17951 297-306 VBG denotes resulting
T17952 307-309 IN denotes in
T17953 310-327 JJ denotes DO11.10xCD2-GATA3
T17954 328-332 NNS denotes mice
T17955 332-333 . denotes .
T17956 334-338 NN denotes Mice
T17957 339-343 VBN denotes used
T17958 344-347 IN denotes for
T17959 348-359 NNS denotes experiments
T17960 360-364 VBD denotes were
T17961 365-376 VBN denotes backcrossed
T17962 377-379 IN denotes on
T17963 380-381 DT denotes a
T17964 382-388 NNP denotes BALB/c
T17965 389-399 NN denotes background
T17966 400-403 IN denotes for
T17967 404-405 DT denotes a
T17968 406-413 NN denotes minimum
T17969 414-416 IN denotes of
T17970 417-422 CD denotes eight
T17971 423-434 NNS denotes generations
T17972 435-438 CC denotes and
T17973 439-443 VBN denotes used
T17974 444-446 IN denotes at
T17975 447-449 DT denotes an
T17976 450-453 NN denotes age
T17977 454-456 IN denotes of
T17978 457-458 CD denotes 8
T17979 459-461 CD denotes 12
T17980 462-464 NN denotes wk
T17981 464-465 . denotes .
T17982 466-470 NNS denotes Mice
T17983 471-475 VBD denotes were
T17984 476-482 VBN denotes housed
T17985 483-488 IN denotes under
T17986 489-497 JJ denotes specific
T17987 498-511 JJ denotes pathogen-free
T17988 512-522 NNS denotes conditions
T17989 523-526 CC denotes and
T17990 527-530 DT denotes all
T17991 531-537 JJ denotes animal
T17992 538-545 NNS denotes studies
T17993 546-550 VBD denotes were
T17994 551-560 VBN denotes performed
T17995 561-570 VBG denotes according
T17996 571-573 TO denotes to
T17997 574-587 JJ denotes institutional
T17998 588-591 CC denotes and
T17999 592-597 NN denotes state
T18000 598-608 NNS denotes guidelines
T18001 608-609 . denotes .
R13523 T17891 T17891 ROOT Mice,Mice
R13598 T17966 T17965 prep for,background
R13599 T17967 T17968 det a,minimum
R13600 T17968 T17966 pobj minimum,for
R13601 T17969 T17968 prep of,minimum
R13602 T17970 T17971 nummod eight,generations
R13603 T17971 T17969 pobj generations,of
R13604 T17972 T17961 cc and,backcrossed
R13605 T17973 T17961 conj used,backcrossed
R13606 T17974 T17973 prep at,used
R13607 T17975 T17976 det an,age
R13608 T17976 T17974 pobj age,at
R13609 T17977 T17976 prep of,age
R13610 T17978 T17977 pobj 8,of
R13611 T17979 T17980 nummod 12,wk
R13612 T17980 T17978 appos wk,8
R13613 T17981 T17961 punct .,backcrossed
R13614 T17982 T17984 nsubjpass Mice,housed
R13615 T17983 T17984 auxpass were,housed
R13616 T17984 T17984 ROOT housed,housed
R13617 T17985 T17984 prep under,housed
R13618 T17986 T17988 amod specific,conditions
R13619 T17987 T17988 amod pathogen-free,conditions
R13620 T17988 T17985 pobj conditions,under
R13621 T17989 T17988 cc and,conditions
R13622 T17990 T17992 det all,studies
R13623 T17991 T17992 compound animal,studies
R13624 T17992 T17994 nsubjpass studies,performed
R13625 T17993 T17994 auxpass were,performed
R13626 T17994 T17984 conj performed,housed
R13627 T17995 T17994 prep according,performed
R13628 T17996 T17995 prep to,according
R13629 T17997 T18000 amod institutional,guidelines
R13630 T17998 T17997 cc and,institutional
R13631 T17999 T17997 conj state,institutional
R13632 T18000 T17996 pobj guidelines,to
R13633 T18001 T17994 punct .,performed
R13524 T17892 T17891 punct .,Mice
R13525 T17893 T17895 amod Normal,mice
R13526 T17894 T17895 compound B6,mice
R13527 T17895 T17897 nsubjpass mice,purchased
R13528 T17896 T17897 auxpass were,purchased
R13529 T17897 T17897 ROOT purchased,purchased
R13530 T17898 T17897 prep from,purchased
R13531 T17899 T17901 det the,Laboratories
R13532 T17900 T17901 compound Jackson,Laboratories
R13533 T17901 T17898 pobj Laboratories,from
R13534 T17902 T17901 punct (,Laboratories
R13535 T17903 T17904 compound Bar,Harbor
R13536 T17904 T17901 appos Harbor,Laboratories
R13537 T17905 T17904 punct ",",Harbor
R13538 T17906 T17904 npadvmod Maine,Harbor
R13539 T17907 T17901 punct ),Laboratories
R13540 T17908 T17897 punct .,purchased
R13541 T17909 T17910 compound Transgenic,DO11
R13542 T17910 T17914 nsubj DO11,expressing
R13543 T17911 T17912 nummod .10,mice
R13544 T17912 T17910 appos mice,DO11
R13545 T17913 T17910 punct ",",DO11
R13546 T17914 T17930 advcl expressing,backcrossed
R13547 T17915 T17918 det a,receptor
R13548 T17916 T17918 compound T,receptor
R13549 T17917 T17918 compound cell,receptor
R13550 T17918 T17914 dobj receptor,expressing
R13551 T17919 T17918 prep for,receptor
R13552 T17920 T17919 pobj OVA323,for
R13553 T17921 T17922 nummod 339,peptide
R13554 T17922 T17918 appos peptide,receptor
R13555 T17923 T17922 prep in,peptide
R13556 T17924 T17925 det the,context
R13557 T17925 T17923 pobj context,in
R13558 T17926 T17925 prep of,context
R13559 T17927 T17926 pobj H-2d,of
R13560 T17928 T17930 punct ",",backcrossed
R13561 T17929 T17930 auxpass were,backcrossed
R13562 T17930 T17930 ROOT backcrossed,backcrossed
R13563 T17931 T17930 prep with,backcrossed
R13564 T17932 T17931 pobj mice,with
R13565 T17933 T17932 acl expressing,mice
R13566 T17934 T17947 nmod GATA-3,[
R13567 T17935 T17934 punct ",",GATA-3
R13568 T17936 T17934 acl driven,GATA-3
R13569 T17937 T17936 agent by,driven
R13570 T17938 T17943 det the,region
R13571 T17939 T17943 amod human,region
R13572 T17940 T17943 compound CD2,region
R13573 T17941 T17942 compound locus,control
R13574 T17942 T17943 compound control,region
R13575 T17943 T17937 pobj region,by
R13576 T17944 T17945 punct (,CD2-GATA3
R13577 T17945 T17943 appos CD2-GATA3,region
R13578 T17946 T17947 punct ),[
R13579 T17947 T17949 nmod [,]
R13580 T17948 T17949 nummod 22,]
R13581 T17949 T17933 dobj ],expressing
R13582 T17950 T17930 punct ",",backcrossed
R13583 T17951 T17930 advcl resulting,backcrossed
R13584 T17952 T17951 prep in,resulting
R13585 T17953 T17954 amod DO11.10xCD2-GATA3,mice
R13586 T17954 T17952 pobj mice,in
R13587 T17955 T17930 punct .,backcrossed
R13588 T17956 T17961 nsubjpass Mice,backcrossed
R13589 T17957 T17956 acl used,Mice
R13590 T17958 T17957 prep for,used
R13591 T17959 T17958 pobj experiments,for
R13592 T17960 T17961 auxpass were,backcrossed
R13593 T17961 T17961 ROOT backcrossed,backcrossed
R13594 T17962 T17961 prep on,backcrossed
R13595 T17963 T17965 det a,background
R13596 T17964 T17965 compound BALB/c,background
R13597 T17965 T17962 pobj background,on

GO-BP

Id Subject Object Predicate Lexical cue
T17777 450-453 http://purl.obolibrary.org/obo/GO_0007568 denotes age

GO-CC

Id Subject Object Predicate Lexical cue
T18009 127-131 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T17772 0-5 Sentence denotes Mice.
T17773 6-86 Sentence denotes Normal B6 mice were purchased from the Jackson Laboratories (Bar Harbor, Maine).
T17774 87-333 Sentence denotes Transgenic DO11.10 mice, expressing a T cell receptor for OVA323–339 peptide in the context of H-2d, were backcrossed with mice expressing GATA-3, driven by the human CD2 locus control region (CD2-GATA3) [22], resulting in DO11.10xCD2-GATA3 mice.
T17775 334-465 Sentence denotes Mice used for experiments were backcrossed on a BALB/c background for a minimum of eight generations and used at an age of 8–12 wk.
T17776 466-609 Sentence denotes Mice were housed under specific pathogen-free conditions and all animal studies were performed according to institutional and state guidelines.
T258 0-5 Sentence denotes Mice.
T259 6-86 Sentence denotes Normal B6 mice were purchased from the Jackson Laboratories (Bar Harbor, Maine).
T260 87-333 Sentence denotes Transgenic DO11.10 mice, expressing a T cell receptor for OVA323–339 peptide in the context of H-2d, were backcrossed with mice expressing GATA-3, driven by the human CD2 locus control region (CD2-GATA3) [22], resulting in DO11.10xCD2-GATA3 mice.
T261 334-465 Sentence denotes Mice used for experiments were backcrossed on a BALB/c background for a minimum of eight generations and used at an age of 8–12 wk.
T262 466-609 Sentence denotes Mice were housed under specific pathogen-free conditions and all animal studies were performed according to institutional and state guidelines.

events-check-again

Id Subject Object Predicate Lexical cue
T18037 215-225 Gene_expression denotes expressing
T18038 226-232 Protein denotes GATA-3
T18039 254-257 Protein denotes CD2
T18040 280-283 Protein denotes CD2
T18041 284-289 Protein denotes GATA3
T18042 318-321 Protein denotes CD2
T18043 322-327 Protein denotes GATA3
R13641 T18038 T18037 themeOf GATA-3,expressing

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18010 248-278 Protein denotes human CD2 locus control region
T18011 280-283 Protein denotes CD2
T18012 284-289 Protein denotes GATA3
T18013 310-327 Protein denotes DO11.10xCD2-GATA3
T18014 215-225 Gene_expression denotes expressing
T18015 215-225 Gene_expression denotes expressing
R13635 T18010 T18014 themeOf human CD2 locus control region,expressing
R13636 T18012 T18015 themeOf GATA3,expressing

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T17765 215-225 Gene_expression denotes expressing
T17766 226-232 Protein denotes GATA-3
T17767 254-257 Protein denotes CD2
T17768 280-283 Protein denotes CD2
T17769 284-289 Protein denotes GATA3
T17770 318-321 Protein denotes CD2
T17771 322-327 Protein denotes GATA3
R13417 T17766 T17765 themeOf GATA-3,expressing

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17881 226-232 P23771 denotes GATA-3
T17882 254-257 P06729 denotes CD2
T17883 280-283 P06729 denotes CD2
T17884 284-289 P23771 denotes GATA3
T17885 322-327 P23771 denotes GATA3

test2

Id Subject Object Predicate Lexical cue
T17758 215-225 Gene_expression denotes expressing
T17759 226-232 Protein denotes GATA-3
T17760 254-257 Protein denotes CD2
T17761 280-283 Protein denotes CD2
T17762 284-289 Protein denotes GATA3
T17763 315-321 Protein denotes 10xCD2
T17764 322-327 Protein denotes GATA3
R13416 T17759 T17758 themeOf GATA-3,expressing