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PMC:2222968 / 10130-10615 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T23815 10-13 NN denotes Th2
T23816 14-19 NN denotes Cells
T23817 20-22 VB denotes Do
T23818 23-26 NNP denotes Not
T23819 27-34 NNP denotes Express
T23820 35-40 NN denotes FOXP3
T23821 41-42 -LRB- denotes (
T23822 42-43 NN denotes A
T23823 43-44 -RRB- denotes )
T23824 45-58 JJ denotes Intracellular
T23825 59-63 NN denotes FACS
T23826 64-72 NN denotes analysis
T23827 73-75 IN denotes of
T23828 76-81 NN denotes FOXP3
T23829 82-92 NN denotes expression
T23830 93-95 IN denotes in
T23831 96-99 NN denotes Th1
T23832 99-100 -COMMA- denotes ,
T23833 101-104 NN denotes Th2
T23834 104-105 -COMMA- denotes ,
T23835 106-108 CC denotes or
T23836 109-129 JJ denotes iTreg-differentiated
T23837 130-135 NN denotes cells
T23838 136-137 -LRB- denotes (
T23839 137-140 CD denotes two
T23840 141-147 NN denotes rounds
T23841 147-148 -COMMA- denotes ,
T23842 149-158 NN denotes phenotype
T23843 159-162 VB denotes see
T23844 163-169 NN denotes Figure
T23845 170-172 NN denotes S1
T23846 172-173 -RRB- denotes )
T23847 173-174 -COMMA- denotes ,
T23848 175-181 VB denotes rested
T23849 182-184 CC denotes or
T23850 185-194 VB denotes activated
T23851 194-195 -COMMA- denotes ,
T23852 196-200 IN denotes with
T23853 201-203 CC denotes or
T23854 204-211 IN denotes without
T23855 212-217 NN denotes TGF-β
T23856 219-224 NN denotes FOXP3
T23857 225-235 NN denotes expression
T23858 236-239 VB denotes was
T23859 240-248 VB denotes measured
T23860 249-254 IN denotes after
T23861 255-256 CD denotes 5
T23862 257-258 NN denotes d
T23863 259-261 IN denotes in
T23864 262-269 NN denotes culture
T23865 271-274 DT denotes The
T23866 275-278 NN denotes dot
T23867 279-284 NN denotes blots
T23868 285-288 VB denotes are
T23869 289-303 JJ denotes representative
T23870 304-306 IN denotes of
T23871 307-312 CD denotes three
T23872 313-324 JJ denotes independent
T23873 325-336 NN denotes experiments
T23874 338-339 -LRB- denotes (
T23875 339-340 NN denotes B
T23876 340-341 -RRB- denotes )
T23877 342-347 VB denotes Shows
T23878 348-351 DT denotes the
T23879 352-356 JJ denotes same
T23880 357-369 JJ denotes experimental
T23881 370-375 NN denotes setup
T23882 375-376 -COMMA- denotes ,
T23883 377-380 CC denotes but
T23884 381-390 RB denotes naturally
T23885 391-400 VB denotes occurring
T23886 401-404 NN denotes Th2
T23887 405-410 NN denotes cells
T23888 411-415 VB denotes were
T23889 416-424 VB denotes analyzed
T23890 426-430 NN denotes Data
T23891 431-434 VB denotes are
T23892 435-449 JJ denotes representative
T23893 450-452 IN denotes of
T23894 453-458 CD denotes three
T23895 459-470 JJ denotes independent
T23896 471-482 NN denotes experiments
R17844 T23816 T23815 arg1Of Cells,Th2
R17845 T23816 T23817 arg1Of Cells,Do
R17846 T23819 T23818 arg1Of Express,Not
R17847 T23820 T23817 arg2Of FOXP3,Do
R17848 T23820 T23819 arg1Of FOXP3,Express
R17849 T23822 T23821 arg2Of A,(
R17850 T23823 T23821 arg3Of ),(
R17851 T23826 T23821 arg1Of analysis,(
R17852 T23826 T23824 arg1Of analysis,Intracellular
R17853 T23826 T23825 arg1Of analysis,FACS
R17854 T23826 T23827 arg1Of analysis,of
R17855 T23826 T23830 arg1Of analysis,in
R17856 T23826 T23838 arg1Of analysis,(
R17857 T23826 T23847 arg1Of analysis,","
R17858 T23826 T23848 arg2Of analysis,rested
R17859 T23826 T23850 arg2Of analysis,activated
R17860 T23829 T23827 arg2Of expression,of
R17861 T23829 T23828 arg1Of expression,FOXP3
R17862 T23831 T23832 arg1Of Th1,","
R17863 T23832 T23835 arg1Of ",",or
R17864 T23833 T23832 arg2Of Th2,","
R17865 T23835 T23834 arg1Of or,","
R17866 T23836 T23835 arg2Of iTreg-differentiated,or
R17867 T23837 T23830 arg2Of cells,in
R17868 T23837 T23831 arg1Of cells,Th1
R17869 T23837 T23833 arg1Of cells,Th2
R17870 T23837 T23836 arg1Of cells,iTreg-differentiated
R17871 T23840 T23839 arg1Of rounds,two
R17872 T23840 T23841 arg1Of rounds,","
R17873 T23840 T23843 arg1Of rounds,see
R17874 T23842 T23841 arg2Of phenotype,","
R17875 T23843 T23838 arg2Of see,(
R17876 T23845 T23843 arg2Of S1,see
R17877 T23845 T23844 arg1Of S1,Figure
R17878 T23846 T23838 arg3Of ),(
R17879 T23848 T23849 arg1Of rested,or
R17880 T23849 T23851 arg1Of or,","
R17881 T23849 T23852 arg1Of or,with
R17882 T23849 T23854 arg1Of or,without
R17883 T23850 T23849 arg2Of activated,or
R17884 T23852 T23853 arg1Of with,or
R17885 T23854 T23853 arg2Of without,or
R17886 T23855 T23852 arg2Of TGF-β,with
R17887 T23855 T23854 arg2Of TGF-β,without
R17888 T23857 T23856 arg1Of expression,FOXP3
R17889 T23857 T23858 arg1Of expression,was
R17890 T23857 T23859 arg2Of expression,measured
R17891 T23859 T23858 arg2Of measured,was
R17892 T23859 T23860 arg1Of measured,after
R17893 T23862 T23860 arg2Of d,after
R17894 T23862 T23861 arg1Of d,5
R17895 T23862 T23863 arg1Of d,in
R17896 T23864 T23863 arg2Of culture,in
R17897 T23867 T23865 arg1Of blots,The
R17898 T23867 T23866 arg1Of blots,dot
R17899 T23867 T23868 arg1Of blots,are
R17900 T23867 T23869 arg1Of blots,representative
R17901 T23869 T23868 arg2Of representative,are
R17902 T23869 T23870 arg1Of representative,of
R17903 T23873 T23870 arg2Of experiments,of
R17904 T23873 T23871 arg1Of experiments,three
R17905 T23873 T23872 arg1Of experiments,independent
R17906 T23875 T23874 arg2Of B,(
R17907 T23875 T23877 arg1Of B,Shows
R17908 T23876 T23874 arg3Of ),(
R17909 T23877 T23883 arg1Of Shows,but
R17910 T23881 T23877 arg2Of setup,Shows
R17911 T23881 T23878 arg1Of setup,the
R17912 T23881 T23879 arg1Of setup,same
R17913 T23881 T23880 arg1Of setup,experimental
R17914 T23883 T23882 arg1Of but,","
R17915 T23885 T23884 arg1Of occurring,naturally
R17916 T23887 T23885 arg1Of cells,occurring
R17917 T23887 T23886 arg1Of cells,Th2
R17918 T23887 T23888 arg1Of cells,were
R17919 T23887 T23889 arg2Of cells,analyzed
R17920 T23889 T23883 arg2Of analyzed,but
R17921 T23889 T23888 arg2Of analyzed,were
R17922 T23890 T23891 arg1Of Data,are
R17923 T23890 T23892 arg1Of Data,representative
R17924 T23892 T23891 arg2Of representative,are
R17925 T23892 T23893 arg1Of representative,of
R17926 T23896 T23893 arg2Of experiments,of
R17927 T23896 T23894 arg1Of experiments,three
R17928 T23896 T23895 arg1Of experiments,independent

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23907 10-13 CD denotes Th2
T23908 14-19 NNS denotes Cells
T23909 20-22 VBP denotes Do
T23910 23-26 RB denotes Not
T23911 27-34 NNP denotes Express
T23912 35-40 NNP denotes FOXP3
T23913 41-42 -LRB- denotes (
T23914 42-43 NNP denotes A
T23915 43-44 -RRB- denotes )
T23916 45-58 NNP denotes Intracellular
T23917 59-63 NNP denotes FACS
T23918 64-72 NN denotes analysis
T23919 73-75 IN denotes of
T23920 76-81 CD denotes FOXP3
T23921 82-92 NN denotes expression
T23922 93-95 IN denotes in
T23923 96-99 NNP denotes Th1
T23924 99-100 , denotes ,
T23925 101-104 NNP denotes Th2
T23926 104-105 , denotes ,
T23927 106-108 CC denotes or
T23928 109-129 JJ denotes iTreg-differentiated
T23929 130-135 NNS denotes cells
T23930 136-137 -LRB- denotes (
T23931 137-140 CD denotes two
T23932 141-147 NNS denotes rounds
T23933 147-148 , denotes ,
T23934 149-158 NN denotes phenotype
T23935 159-162 VBP denotes see
T23936 163-169 NN denotes Figure
T23937 170-172 CD denotes S1
T23938 172-173 -RRB- denotes )
T23939 173-174 , denotes ,
T23940 175-181 VBD denotes rested
T23941 182-184 CC denotes or
T23942 185-194 VBD denotes activated
T23943 194-195 , denotes ,
T23944 196-200 IN denotes with
T23945 201-203 CC denotes or
T23946 204-211 IN denotes without
T23947 212-217 NNP denotes TGF-β
T23948 217-218 . denotes .
T23949 219-224 CD denotes FOXP3
T23950 225-235 NN denotes expression
T23951 236-239 VBD denotes was
T23952 240-248 VBN denotes measured
T23953 249-254 IN denotes after
T23954 255-256 CD denotes 5
T23955 257-258 LS denotes d
T23956 259-261 IN denotes in
T23957 262-269 NN denotes culture
T23958 269-270 . denotes .
T23959 271-274 DT denotes The
T23960 275-278 VBP denotes dot
T23961 279-284 NNS denotes blots
T23962 285-288 VBP denotes are
T23963 289-303 NN denotes representative
T23964 304-306 IN denotes of
T23965 307-312 CD denotes three
T23966 313-324 JJ denotes independent
T23967 325-336 NNS denotes experiments
T23968 336-337 . denotes .
T23969 338-339 -LRB- denotes (
T23970 339-340 NNP denotes B
T23971 340-341 -RRB- denotes )
T23972 342-347 VBZ denotes Shows
T23973 348-351 DT denotes the
T23974 352-356 JJ denotes same
T23975 357-369 JJ denotes experimental
T23976 370-375 NN denotes setup
T23977 375-376 , denotes ,
T23978 377-380 CC denotes but
T23979 381-390 RB denotes naturally
T23980 391-400 VBG denotes occurring
T23981 401-404 JJ denotes Th2
T23982 405-410 NNS denotes cells
T23983 411-415 VBD denotes were
T23984 416-424 VBN denotes analyzed
T23985 424-425 . denotes .
T23986 426-430 NNS denotes Data
T23987 431-434 VBP denotes are
T23988 435-449 NN denotes representative
T23989 450-452 IN denotes of
T23990 453-458 CD denotes three
T23991 459-470 JJ denotes independent
T23992 471-482 NNS denotes experiments
T23993 482-483 . denotes .
R17929 T23907 T23908 nummod Th2,Cells
R17930 T23908 T23908 ROOT Cells,Cells
R17931 T23909 T23912 nmod Do,FOXP3
R17932 T23910 T23912 neg Not,FOXP3
R17933 T23911 T23912 compound Express,FOXP3
R17934 T23912 T23908 appos FOXP3,Cells
R17935 T23913 T23914 punct (,A
R17936 T23914 T23912 appos A,FOXP3
R17937 T23915 T23912 punct ),FOXP3
R17938 T23916 T23917 compound Intracellular,FACS
R17939 T23917 T23918 compound FACS,analysis
R17940 T23918 T23935 nsubj analysis,see
R17941 T23919 T23918 prep of,analysis
R17942 T23920 T23921 nummod FOXP3,expression
R17943 T23921 T23919 pobj expression,of
R17944 T23922 T23921 prep in,expression
R17945 T23923 T23922 pobj Th1,in
R17946 T23924 T23923 punct ",",Th1
R17947 T23925 T23923 conj Th2,Th1
R17948 T23926 T23925 punct ",",Th2
R17949 T23927 T23925 cc or,Th2
R17950 T23928 T23929 amod iTreg-differentiated,cells
R17951 T23929 T23925 conj cells,Th2
R17952 T23930 T23929 punct (,cells
R17953 T23931 T23932 nummod two,rounds
R17954 T23932 T23929 conj rounds,cells
R17955 T23933 T23932 punct ",",rounds
R17956 T23934 T23935 nsubj phenotype,see
R17957 T23935 T23935 ROOT see,see
R17958 T23936 T23935 dobj Figure,see
R17959 T23937 T23936 nummod S1,Figure
R17960 T23938 T23936 punct ),Figure
R17961 T23939 T23935 punct ",",see
R17962 T23940 T23935 dep rested,see
R17963 T23941 T23940 cc or,rested
R17964 T23942 T23940 conj activated,rested
R17965 T23943 T23942 punct ",",activated
R17966 T23944 T23942 prep with,activated
R17967 T23945 T23944 cc or,with
R17968 T23946 T23944 conj without,with
R17969 T23947 T23946 pobj TGF-β,without
R17970 T23948 T23935 punct .,see
R17971 T23949 T23950 nummod FOXP3,expression
R17972 T23950 T23952 nsubjpass expression,measured
R17973 T23951 T23952 auxpass was,measured
R17974 T23952 T23952 ROOT measured,measured
R17975 T23953 T23952 prep after,measured
R17976 T23954 T23955 nummod 5,d
R17977 T23955 T23953 pobj d,after
R17978 T23956 T23955 prep in,d
R17979 T23957 T23956 pobj culture,in
R17980 T23958 T23952 punct .,measured
R17981 T23959 T23961 det The,blots
R17982 T23960 T23961 amod dot,blots
R17983 T23961 T23962 nsubj blots,are
R17984 T23962 T23962 ROOT are,are
R17985 T23963 T23962 attr representative,are
R17986 T23964 T23963 prep of,representative
R17987 T23965 T23967 nummod three,experiments
R17988 T23966 T23967 amod independent,experiments
R17989 T23967 T23964 pobj experiments,of
R17990 T23968 T23962 punct .,are
R17991 T23969 T23970 punct (,B
R17992 T23970 T23972 nsubj B,Shows
R17993 T23971 T23970 punct ),B
R17994 T23972 T23972 ROOT Shows,Shows
R17995 T23973 T23976 det the,setup
R17996 T23974 T23976 amod same,setup
R17997 T23975 T23976 amod experimental,setup
R17998 T23976 T23972 dobj setup,Shows
R17999 T23977 T23972 punct ",",Shows
R18000 T23978 T23972 cc but,Shows
R18001 T23979 T23980 advmod naturally,occurring
R18002 T23980 T23972 conj occurring,Shows
R18003 T23981 T23982 amod Th2,cells
R18004 T23982 T23984 nsubjpass cells,analyzed
R18005 T23983 T23984 auxpass were,analyzed
R18006 T23984 T23980 advcl analyzed,occurring
R18007 T23985 T23972 punct .,Shows
R18008 T23986 T23987 nsubj Data,are
R18009 T23987 T23987 ROOT are,are
R18010 T23988 T23987 attr representative,are
R18011 T23989 T23988 prep of,representative
R18012 T23990 T23992 nummod three,experiments
R18013 T23991 T23992 amod independent,experiments
R18014 T23992 T23989 pobj experiments,of
R18015 T23993 T23987 punct .,are

GO-BP

Id Subject Object Predicate Lexical cue
T23814 115-135 http://purl.obolibrary.org/obo/GO_0030154 denotes differentiated cells

GO-CC

Id Subject Object Predicate Lexical cue
T24001 45-58 http://purl.obolibrary.org/obo/GO_0005622 denotes Intracellular
T24002 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T24003 405-410 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T23808 10-40 Sentence denotes Th2 Cells Do Not Express FOXP3
T23809 41-218 Sentence denotes (A) Intracellular FACS analysis of FOXP3 expression in Th1, Th2, or iTreg-differentiated cells (two rounds, phenotype see Figure S1), rested or activated, with or without TGF-β.
T23810 219-270 Sentence denotes FOXP3 expression was measured after 5 d in culture.
T23811 271-337 Sentence denotes The dot blots are representative of three independent experiments.
T23812 338-425 Sentence denotes (B) Shows the same experimental setup, but naturally occurring Th2 cells were analyzed.
T23813 426-483 Sentence denotes Data are representative of three independent experiments.
T75 0-40 Sentence denotes Figure 2 Th2 Cells Do Not Express FOXP3
T76 41-218 Sentence denotes (A) Intracellular FACS analysis of FOXP3 expression in Th1, Th2, or iTreg-differentiated cells (two rounds, phenotype see Figure S1), rested or activated, with or without TGF-β.
T77 219-270 Sentence denotes FOXP3 expression was measured after 5 d in culture.
T78 271-337 Sentence denotes The dot blots are representative of three independent experiments.
T79 338-425 Sentence denotes (B) Shows the same experimental setup, but naturally occurring Th2 cells were analyzed.
T80 426-483 Sentence denotes Data are representative of three independent experiments.

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T24033 27-34 Gene_expression denotes Express true
T24034 35-40 Protein denotes FOXP3
T24035 76-81 Protein denotes FOXP3
T24036 82-92 Gene_expression denotes expression true
T24037 212-217 Protein denotes TGF-β
T24038 219-224 Protein denotes FOXP3
T24039 225-235 Gene_expression denotes expression true
R18032 T24034 T24033 themeOf FOXP3,Express
R18033 T24035 T24036 themeOf FOXP3,expression
R18034 T24038 T24039 themeOf FOXP3,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T24006 101-104 Protein denotes Th2
T24007 212-217 Protein denotes TGF-β
T24008 82-92 Gene_expression denotes expression
T24009 82-92 Gene_expression denotes expression
T24010 82-92 Gene_expression denotes expression
T24011 219-224 Protein denotes FOXP3
T24012 225-235 Gene_expression denotes expression
T24004 76-81 Protein denotes FOXP3
T24005 96-99 Protein denotes Th1
R18019 T24004 T24008 themeOf FOXP3,expression
R18020 T24005 T24009 themeOf Th1,expression
R18021 T24006 T24010 themeOf Th2,expression
R18022 T24011 T24012 themeOf FOXP3,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T23801 27-34 Gene_expression denotes Express true
T23802 35-40 Protein denotes FOXP3
T23803 76-81 Protein denotes FOXP3
T23804 82-92 Gene_expression denotes expression true
T23805 212-217 Protein denotes TGF-β
T23806 219-224 Protein denotes FOXP3
T23807 225-235 Gene_expression denotes expression true
R17841 T23802 T23801 themeOf FOXP3,Express
R17842 T23803 T23804 themeOf FOXP3,expression
R17843 T23806 T23807 themeOf FOXP3,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T23897 35-40 Q9BZS1 denotes FOXP3
T23898 76-81 Q9BZS1 denotes FOXP3
T23899 212-217 P01137 denotes TGF-β
T23900 219-224 Q9BZS1 denotes FOXP3

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T23794 27-34 Gene_expression denotes Express true
T23795 35-40 Protein denotes FOXP3 true
T23796 76-81 Protein denotes FOXP3 true
T23797 82-92 Gene_expression denotes expression
T23798 212-217 Protein denotes TGF-β
T23799 219-224 Protein denotes FOXP3
T23800 225-235 Gene_expression denotes expression
R17838 T23795 T23794 themeOf FOXP3,Express
R17839 T23796 T23797 themeOf FOXP3,expression
R17840 T23799 T23800 themeOf FOXP3,expression