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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20344 0-5 NN denotes Rnase
T20345 6-16 NN denotes protection
T20346 17-22 NN denotes assay
T20347 24-29 JJ denotes Total
T20348 30-33 NN denotes RNA
T20349 34-37 VB denotes was
T20350 38-46 VB denotes isolated
T20351 47-51 IN denotes from
T20352 52-57 JJ denotes CD19+
T20353 58-71 JJ denotes MACS-purified
T20354 72-73 NN denotes B
T20355 74-79 NN denotes cells
T20356 80-85 VB denotes using
T20357 86-89 DT denotes the
T20358 90-96 NNP denotes Rneasy
T20359 97-101 NN denotes midi
T20360 102-114 NN denotes purification
T20361 115-118 NN denotes kit
T20362 119-123 IN denotes with
T20363 124-129 NN denotes Dnase
T20364 130-139 NN denotes treatment
T20365 139-140 -COMMA- denotes ,
T20366 141-150 VB denotes according
T20367 151-153 TO denotes to
T20368 154-157 DT denotes the
T20369 158-170 NN denotes manufacturer
T20370 170-172 POS denotes 's
T20371 173-185 NN denotes instructions
T20372 186-187 -LRB- denotes (
T20373 187-193 NN denotes Qiagen
T20374 193-194 -RRB- denotes )
T20375 196-199 DT denotes The
T20376 200-205 NN denotes mCK-1
T20377 206-211 NN denotes probe
T20378 212-220 NN denotes template
T20379 221-224 NN denotes set
T20380 225-226 -LRB- denotes (
T20381 226-228 NN denotes BD
T20382 229-240 NNP denotes Biosciences
T20383 240-241 -RRB- denotes )
T20384 242-245 VB denotes was
T20385 246-253 VB denotes labeled
T20386 254-259 VB denotes using
T20387 260-263 DT denotes the
T20388 264-266 FW denotes In
T20389 267-272 FW denotes Vitro
T20390 273-286 NN denotes Transcription
T20391 287-290 NN denotes Kit
T20392 291-300 VB denotes according
T20393 301-303 TO denotes to
T20394 304-307 DT denotes the
T20395 308-320 NN denotes manufacturer
T20396 320-322 POS denotes 's
T20397 323-335 NN denotes instructions
T20398 336-337 -LRB- denotes (
T20399 337-339 NN denotes BD
T20400 340-351 NNP denotes Biosciences
T20401 351-352 -RRB- denotes )
T20402 354-361 RB denotes Briefly
T20403 361-362 -COMMA- denotes ,
T20404 363-365 CD denotes 50
T20405 366-368 NN denotes ng
T20406 369-371 IN denotes of
T20407 372-377 NN denotes mCK-1
T20408 378-383 NN denotes probe
T20409 384-387 NN denotes set
T20410 388-391 VB denotes was
T20411 392-399 VB denotes labeled
T20412 400-404 IN denotes with
T20413 405-406 -LRB- denotes [
T20414 406-411 NN denotes α-32P
T20415 411-412 -RRB- denotes ]
T20416 412-415 NN denotes UTP
T20417 416-421 VB denotes using
T20418 422-424 NN denotes T7
T20419 425-428 NN denotes RNA
T20420 429-439 NN denotes polymerase
T20421 440-443 CC denotes and
T20422 444-452 VB denotes purified
T20423 453-458 VB denotes using
T20424 459-467 NN denotes Sephadex
T20425 468-472 NN denotes G-50
T20426 473-480 NN denotes columns
T20427 481-482 -LRB- denotes (
T20428 482-489 NNP denotes NucAway
T20429 490-494 NNP denotes Spin
T20430 495-501 NN denotes column
T20431 501-502 -COMMA- denotes ,
T20432 503-509 NNP denotes Ambion
T20433 509-510 -RRB- denotes )
T20434 512-515 DT denotes The
T20435 516-523 VB denotes labeled
T20436 524-529 NN denotes probe
T20437 530-533 VB denotes was
T20438 534-545 VB denotes quantitated
T20439 546-551 VB denotes using
T20440 552-553 DT denotes a
T20441 554-567 NN denotes scintillation
T20442 568-575 NN denotes counter
T20443 575-576 -COMMA- denotes ,
T20444 577-580 CC denotes and
T20445 581-582 CD denotes 6
T20446 583-584 SYM denotes ×
T20447 585-588 CD denotes 105
T20448 589-598 NN denotes cherenkov
T20449 599-602 NN denotes cpm
T20450 603-606 VB denotes was
T20451 607-611 VB denotes used
T20452 612-614 TO denotes to
T20453 615-624 VB denotes hybridize
T20454 625-627 TO denotes to
T20455 628-629 CD denotes 4
T20456 630-632 NN denotes μg
T20457 633-635 IN denotes of
T20458 636-641 JJ denotes total
T20459 642-645 NN denotes RNA
T20460 646-651 VB denotes using
T20461 652-655 DT denotes the
T20462 656-659 NN denotes RPA
T20463 660-663 NN denotes kit
T20464 664-665 -LRB- denotes (
T20465 665-667 NN denotes BD
T20466 668-679 NNP denotes Biosciences
T20467 679-680 -RRB- denotes )
T20468 682-689 NN denotes Samples
T20469 690-694 VB denotes were
T20470 695-704 VB denotes denatured
T20471 705-707 IN denotes at
T20472 708-710 CD denotes 90
T20473 711-713 NN denotes °C
T20474 714-717 CC denotes and
T20475 718-728 VB denotes hybridized
T20476 729-731 IN denotes at
T20477 732-734 CD denotes 56
T20478 735-737 NN denotes °C
T20479 738-747 RB denotes overnight
T20480 749-764 JJ denotes Single-stranded
T20481 765-768 NN denotes RNA
T20482 769-772 VB denotes was
T20483 773-781 VB denotes digested
T20484 782-786 IN denotes with
T20485 787-788 DT denotes a
T20486 789-796 NN denotes mixture
T20487 797-799 IN denotes of
T20488 800-805 NN denotes Rnase
T20489 806-807 NN denotes A
T20490 808-811 CC denotes and
T20491 812-814 NN denotes T1
T20492 814-815 -COMMA- denotes ,
T20493 816-819 CC denotes and
T20494 820-832 VB denotes precipitated
T20495 833-838 VB denotes using
T20496 839-850 NN denotes isopropanol
T20497 852-861 VB denotes Protected
T20498 862-868 NN denotes probes
T20499 869-873 VB denotes were
T20500 874-882 VB denotes resolved
T20501 883-885 IN denotes on
T20502 886-887 DT denotes a
T20503 888-898 VB denotes denaturing
T20504 899-903 CD denotes 4.75
T20505 903-904 NN denotes %
T20506 905-915 NN denotes acrylamide
T20507 916-919 NN denotes gel
T20508 919-920 -COMMA- denotes ,
T20509 921-926 VB denotes dried
T20510 926-927 -COMMA- denotes ,
T20511 928-931 CC denotes and
T20512 932-938 VB denotes imaged
T20513 939-944 VB denotes using
T20514 945-946 DT denotes a
T20515 947-961 NN denotes phosphorImager
T20516 962-963 -LRB- denotes (
T20517 963-972 NNP denotes Molecular
T20518 973-981 NNP denotes Dynamics
T20519 981-982 -RRB- denotes )
T20520 984-996 NN denotes Densitometry
T20521 997-1000 VB denotes was
T20522 1001-1010 VB denotes performed
T20523 1011-1016 VB denotes using
T20524 1017-1020 DT denotes the
T20525 1021-1031 JJ denotes ImageQuant
T20526 1032-1034 NN denotes TL
T20527 1035-1040 NN denotes v2005
T20528 1041-1049 NN denotes software
T20529 1050-1051 -LRB- denotes (
T20530 1051-1053 NNP denotes GE
T20531 1054-1064 NNP denotes Healthcare
T20532 1064-1065 -RRB- denotes )
R15849 T20346 T20344 arg1Of assay,Rnase
R15850 T20346 T20345 arg1Of assay,protection
R15851 T20348 T20347 arg1Of RNA,Total
R15852 T20348 T20349 arg1Of RNA,was
R15853 T20348 T20350 arg2Of RNA,isolated
R15854 T20350 T20349 arg2Of isolated,was
R15855 T20350 T20351 arg1Of isolated,from
R15856 T20350 T20365 arg1Of isolated,","
R15857 T20350 T20366 arg1Of isolated,according
R15858 T20355 T20351 arg2Of cells,from
R15859 T20355 T20352 arg1Of cells,CD19+
R15860 T20355 T20353 arg1Of cells,MACS-purified
R15861 T20355 T20354 arg1Of cells,B
R15862 T20355 T20356 arg1Of cells,using
R15863 T20361 T20356 arg2Of kit,using
R15864 T20361 T20357 arg1Of kit,the
R15865 T20361 T20358 arg1Of kit,Rneasy
R15866 T20361 T20359 arg1Of kit,midi
R15867 T20361 T20360 arg1Of kit,purification
R15868 T20361 T20362 arg1Of kit,with
R15869 T20364 T20362 arg2Of treatment,with
R15870 T20364 T20363 arg1Of treatment,Dnase
R15871 T20367 T20366 arg2Of to,according
R15872 T20369 T20368 arg1Of manufacturer,the
R15873 T20369 T20370 arg2Of manufacturer,'s
R15874 T20371 T20367 arg2Of instructions,to
R15875 T20371 T20370 arg1Of instructions,'s
R15876 T20371 T20372 arg1Of instructions,(
R15877 T20373 T20372 arg2Of Qiagen,(
R15878 T20374 T20372 arg3Of ),(
R15879 T20379 T20375 arg1Of set,The
R15880 T20379 T20376 arg1Of set,mCK-1
R15881 T20379 T20377 arg1Of set,probe
R15882 T20379 T20378 arg1Of set,template
R15883 T20379 T20380 arg1Of set,(
R15884 T20379 T20384 arg1Of set,was
R15885 T20379 T20385 arg2Of set,labeled
R15886 T20382 T20380 arg2Of Biosciences,(
R15887 T20382 T20381 arg1Of Biosciences,BD
R15888 T20383 T20380 arg3Of ),(
R15889 T20385 T20384 arg2Of labeled,was
R15890 T20385 T20386 modOf labeled,using
R15891 T20386 T20392 arg1Of using,according
R15892 T20389 T20388 arg1Of Vitro,In
R15893 T20391 T20386 arg2Of Kit,using
R15894 T20391 T20387 arg1Of Kit,the
R15895 T20391 T20389 arg1Of Kit,Vitro
R15896 T20391 T20390 arg1Of Kit,Transcription
R15897 T20393 T20392 arg2Of to,according
R15898 T20395 T20394 arg1Of manufacturer,the
R15899 T20395 T20396 arg2Of manufacturer,'s
R15900 T20397 T20393 arg2Of instructions,to
R15901 T20397 T20396 arg1Of instructions,'s
R15902 T20397 T20398 arg1Of instructions,(
R15903 T20400 T20398 arg2Of Biosciences,(
R15904 T20400 T20399 arg1Of Biosciences,BD
R15905 T20401 T20398 arg3Of ),(
R15906 T20405 T20404 arg1Of ng,50
R15907 T20405 T20406 arg1Of ng,of
R15908 T20405 T20410 arg1Of ng,was
R15909 T20405 T20411 arg2Of ng,labeled
R15910 T20409 T20406 arg2Of set,of
R15911 T20409 T20407 arg1Of set,mCK-1
R15912 T20409 T20408 arg1Of set,probe
R15913 T20411 T20402 arg1Of labeled,Briefly
R15914 T20411 T20403 arg1Of labeled,","
R15915 T20411 T20410 arg2Of labeled,was
R15916 T20411 T20412 arg1Of labeled,with
R15917 T20414 T20413 arg2Of α-32P,[
R15918 T20415 T20413 arg3Of ],[
R15919 T20416 T20412 arg2Of UTP,with
R15920 T20416 T20413 arg1Of UTP,[
R15921 T20416 T20417 arg1Of UTP,using
R15922 T20416 T20422 arg2Of UTP,purified
R15923 T20417 T20421 arg1Of using,and
R15924 T20420 T20417 arg2Of polymerase,using
R15925 T20420 T20418 arg1Of polymerase,T7
R15926 T20420 T20419 arg1Of polymerase,RNA
R15927 T20422 T20421 arg2Of purified,and
R15928 T20422 T20423 modOf purified,using
R15929 T20426 T20423 arg2Of columns,using
R15930 T20426 T20424 arg1Of columns,Sephadex
R15931 T20426 T20425 arg1Of columns,G-50
R15932 T20426 T20427 arg1Of columns,(
R15933 T20429 T20428 arg1Of Spin,NucAway
R15934 T20430 T20427 arg2Of column,(
R15935 T20430 T20429 arg1Of column,Spin
R15936 T20430 T20431 arg1Of column,","
R15937 T20432 T20431 arg2Of Ambion,","
R15938 T20433 T20427 arg3Of ),(
R15939 T20436 T20434 arg1Of probe,The
R15940 T20436 T20435 arg2Of probe,labeled
R15941 T20436 T20437 arg1Of probe,was
R15942 T20436 T20438 arg2Of probe,quantitated
R15943 T20436 T20439 arg1Of probe,using
R15944 T20438 T20437 arg2Of quantitated,was
R15945 T20438 T20444 arg1Of quantitated,and
R15946 T20439 T20438 arg3Of using,quantitated
R15947 T20442 T20439 arg2Of counter,using
R15948 T20442 T20440 arg1Of counter,a
R15949 T20442 T20441 arg1Of counter,scintillation
R15950 T20444 T20443 arg1Of and,","
R15951 T20447 T20446 arg1Of 105,×
R15952 T20449 T20445 arg1Of cpm,6
R15953 T20449 T20447 arg1Of cpm,105
R15954 T20449 T20448 arg1Of cpm,cherenkov
R15955 T20449 T20450 arg1Of cpm,was
R15956 T20449 T20451 arg2Of cpm,used
R15957 T20449 T20453 arg1Of cpm,hybridize
R15958 T20451 T20444 arg2Of used,and
R15959 T20451 T20450 arg2Of used,was
R15960 T20453 T20451 arg3Of hybridize,used
R15961 T20453 T20452 arg1Of hybridize,to
R15962 T20453 T20454 arg1Of hybridize,to
R15963 T20456 T20454 arg2Of μg,to
R15964 T20456 T20455 arg1Of μg,4
R15965 T20456 T20457 arg1Of μg,of
R15966 T20459 T20457 arg2Of RNA,of
R15967 T20459 T20458 arg1Of RNA,total
R15968 T20459 T20460 arg1Of RNA,using
R15969 T20463 T20460 arg2Of kit,using
R15970 T20463 T20461 arg1Of kit,the
R15971 T20463 T20462 arg1Of kit,RPA
R15972 T20463 T20464 arg1Of kit,(
R15973 T20466 T20464 arg2Of Biosciences,(
R15974 T20466 T20465 arg1Of Biosciences,BD
R15975 T20467 T20464 arg3Of ),(
R15976 T20468 T20469 arg1Of Samples,were
R15977 T20468 T20470 arg2Of Samples,denatured
R15978 T20468 T20475 arg1Of Samples,hybridized
R15979 T20470 T20469 arg2Of denatured,were
R15980 T20470 T20471 arg1Of denatured,at
R15981 T20470 T20474 arg1Of denatured,and
R15982 T20473 T20471 arg2Of °C,at
R15983 T20473 T20472 arg1Of °C,90
R15984 T20475 T20474 arg2Of hybridized,and
R15985 T20475 T20476 arg1Of hybridized,at
R15986 T20478 T20476 arg2Of °C,at
R15987 T20478 T20477 arg1Of °C,56
R15988 T20478 T20479 arg1Of °C,overnight
R15989 T20481 T20480 arg1Of RNA,Single-stranded
R15990 T20481 T20482 arg1Of RNA,was
R15991 T20481 T20483 arg2Of RNA,digested
R15992 T20481 T20494 arg2Of RNA,precipitated
R15993 T20481 T20495 arg1Of RNA,using
R15994 T20483 T20484 arg1Of digested,with
R15995 T20483 T20493 arg1Of digested,and
R15996 T20486 T20484 arg2Of mixture,with
R15997 T20486 T20485 arg1Of mixture,a
R15998 T20486 T20487 arg1Of mixture,of
R15999 T20489 T20488 arg1Of A,Rnase
R16000 T20489 T20490 arg1Of A,and
R16001 T20490 T20487 arg2Of and,of
R16002 T20491 T20490 arg2Of T1,and
R16003 T20493 T20482 arg2Of and,was
R16004 T20493 T20492 arg1Of and,","
R16005 T20494 T20493 arg2Of precipitated,and
R16006 T20495 T20494 arg3Of using,precipitated
R16007 T20496 T20495 arg2Of isopropanol,using
R16008 T20498 T20497 arg2Of probes,Protected
R16009 T20498 T20499 arg1Of probes,were
R16010 T20498 T20500 arg2Of probes,resolved
R16011 T20498 T20512 arg2Of probes,imaged
R16012 T20498 T20513 arg1Of probes,using
R16013 T20500 T20501 arg1Of resolved,on
R16014 T20500 T20511 arg1Of resolved,and
R16015 T20504 T20505 arg1Of 4.75,%
R16016 T20507 T20501 arg2Of gel,on
R16017 T20507 T20502 arg1Of gel,a
R16018 T20507 T20503 arg1Of gel,denaturing
R16019 T20507 T20504 arg1Of gel,4.75
R16020 T20507 T20506 arg1Of gel,acrylamide
R16021 T20507 T20508 arg1Of gel,","
R16022 T20507 T20509 arg2Of gel,dried
R16023 T20511 T20499 arg2Of and,were
R16024 T20511 T20510 arg1Of and,","
R16025 T20512 T20511 arg2Of imaged,and
R16026 T20513 T20512 arg3Of using,imaged
R16027 T20515 T20513 arg2Of phosphorImager,using
R16028 T20515 T20514 arg1Of phosphorImager,a
R16029 T20515 T20516 arg1Of phosphorImager,(
R16030 T20518 T20516 arg2Of Dynamics,(
R16031 T20518 T20517 arg1Of Dynamics,Molecular
R16032 T20519 T20516 arg3Of ),(
R16033 T20520 T20521 arg1Of Densitometry,was
R16034 T20520 T20522 arg2Of Densitometry,performed
R16035 T20522 T20521 arg2Of performed,was
R16036 T20523 T20522 arg3Of using,performed
R16037 T20528 T20523 arg2Of software,using
R16038 T20528 T20524 arg1Of software,the
R16039 T20528 T20525 arg1Of software,ImageQuant
R16040 T20528 T20526 arg1Of software,TL
R16041 T20528 T20527 arg1Of software,v2005
R16042 T20528 T20529 arg1Of software,(
R16043 T20531 T20529 arg2Of Healthcare,(
R16044 T20531 T20530 arg1Of Healthcare,GE
R16045 T20532 T20529 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20534 0-5 JJ denotes Rnase
T20535 6-16 NN denotes protection
T20536 17-22 NN denotes assay
T20537 22-23 . denotes .
T20538 24-29 JJ denotes Total
T20539 30-33 NNP denotes RNA
T20540 34-37 VBD denotes was
T20541 38-46 VBN denotes isolated
T20542 47-51 IN denotes from
T20543 52-56 CD denotes CD19
T20544 56-57 CD denotes +
T20545 58-71 JJ denotes MACS-purified
T20546 72-73 NNP denotes B
T20547 74-79 NNS denotes cells
T20548 80-85 VBG denotes using
T20549 86-89 DT denotes the
T20550 90-96 NNP denotes Rneasy
T20551 97-101 NN denotes midi
T20552 102-114 NN denotes purification
T20553 115-118 NN denotes kit
T20554 119-123 IN denotes with
T20555 124-129 NNP denotes Dnase
T20556 130-139 NN denotes treatment
T20557 139-140 , denotes ,
T20558 141-150 VBG denotes according
T20559 151-153 TO denotes to
T20560 154-157 DT denotes the
T20561 158-170 NN denotes manufacturer
T20562 170-172 POS denotes 's
T20563 173-185 NNS denotes instructions
T20564 186-187 -LRB- denotes (
T20565 187-193 NNP denotes Qiagen
T20566 193-194 -RRB- denotes )
T20567 194-195 . denotes .
T20568 196-199 DT denotes The
T20569 200-205 JJ denotes mCK-1
T20570 206-211 NN denotes probe
T20571 212-220 NN denotes template
T20572 221-224 NN denotes set
T20573 225-226 -LRB- denotes (
T20574 226-228 NNP denotes BD
T20575 229-240 NNPS denotes Biosciences
T20576 240-241 -RRB- denotes )
T20577 242-245 VBD denotes was
T20578 246-253 VBN denotes labeled
T20579 254-259 VBG denotes using
T20580 260-263 DT denotes the
T20581 264-266 NNP denotes In
T20582 267-272 NNP denotes Vitro
T20583 273-286 NNP denotes Transcription
T20584 287-290 NNP denotes Kit
T20585 291-300 VBG denotes according
T20586 301-303 TO denotes to
T20587 304-307 DT denotes the
T20588 308-320 NN denotes manufacturer
T20589 320-322 POS denotes 's
T20590 323-335 NNS denotes instructions
T20591 336-337 -LRB- denotes (
T20592 337-339 NNP denotes BD
T20593 340-351 NNPS denotes Biosciences
T20594 351-352 -RRB- denotes )
T20595 352-353 . denotes .
T20596 354-361 RB denotes Briefly
T20597 361-362 , denotes ,
T20598 363-365 CD denotes 50
T20599 366-368 NN denotes ng
T20600 369-371 IN denotes of
T20601 372-377 JJ denotes mCK-1
T20602 378-383 NN denotes probe
T20603 384-387 NN denotes set
T20604 388-391 VBD denotes was
T20605 392-399 VBN denotes labeled
T20606 400-404 IN denotes with
T20607 405-406 NNP denotes [
T20608 406-411 NNP denotes α-32P
T20609 411-412 NNP denotes ]
T20610 412-415 NNP denotes UTP
T20611 416-421 VBG denotes using
T20612 422-424 CD denotes T7
T20613 425-428 NNP denotes RNA
T20614 429-439 NN denotes polymerase
T20615 440-443 CC denotes and
T20616 444-452 VBD denotes purified
T20617 453-458 VBG denotes using
T20618 459-467 NNP denotes Sephadex
T20619 468-472 NNP denotes G-50
T20620 473-480 NNS denotes columns
T20621 481-482 -LRB- denotes (
T20622 482-489 NNP denotes NucAway
T20623 490-494 NNP denotes Spin
T20624 495-501 NN denotes column
T20625 501-502 , denotes ,
T20626 503-509 NNP denotes Ambion
T20627 509-510 -RRB- denotes )
T20628 510-511 . denotes .
T20629 512-515 DT denotes The
T20630 516-523 VBN denotes labeled
T20631 524-529 NN denotes probe
T20632 530-533 VBD denotes was
T20633 534-545 VBN denotes quantitated
T20634 546-551 VBG denotes using
T20635 552-553 DT denotes a
T20636 554-567 NN denotes scintillation
T20637 568-575 RB denotes counter
T20638 575-576 , denotes ,
T20639 577-580 CC denotes and
T20640 581-582 CD denotes 6
T20641 583-584 NN denotes ×
T20642 585-588 CD denotes 105
T20643 589-598 NN denotes cherenkov
T20644 599-602 NN denotes cpm
T20645 603-606 VBD denotes was
T20646 607-611 VBN denotes used
T20647 612-614 TO denotes to
T20648 615-624 VB denotes hybridize
T20649 625-627 TO denotes to
T20650 628-629 CD denotes 4
T20651 630-632 NN denotes μg
T20652 633-635 IN denotes of
T20653 636-641 JJ denotes total
T20654 642-645 NNP denotes RNA
T20655 646-651 VBG denotes using
T20656 652-655 DT denotes the
T20657 656-659 NNP denotes RPA
T20658 660-663 NN denotes kit
T20659 664-665 -LRB- denotes (
T20660 665-667 NNP denotes BD
T20661 668-679 NNPS denotes Biosciences
T20662 679-680 -RRB- denotes )
T20663 680-681 . denotes .
T20664 682-689 NNS denotes Samples
T20665 690-694 VBD denotes were
T20666 695-704 VBN denotes denatured
T20667 705-707 IN denotes at
T20668 708-710 CD denotes 90
T20669 711-712 CD denotes °
T20670 712-713 NNP denotes C
T20671 714-717 CC denotes and
T20672 718-728 VBN denotes hybridized
T20673 729-731 IN denotes at
T20674 732-734 CD denotes 56
T20675 735-736 CD denotes °
T20676 736-737 NNP denotes C
T20677 738-747 JJ denotes overnight
T20678 747-748 . denotes .
T20679 749-764 JJ denotes Single-stranded
T20680 765-768 NNP denotes RNA
T20681 769-772 VBD denotes was
T20682 773-781 VBN denotes digested
T20683 782-786 IN denotes with
T20684 787-788 DT denotes a
T20685 789-796 NN denotes mixture
T20686 797-799 IN denotes of
T20687 800-805 NNP denotes Rnase
T20688 806-807 NNP denotes A
T20689 808-811 CC denotes and
T20690 812-814 NNP denotes T1
T20691 814-815 , denotes ,
T20692 816-819 CC denotes and
T20693 820-832 VBD denotes precipitated
T20694 833-838 VBG denotes using
T20695 839-850 NN denotes isopropanol
T20696 850-851 . denotes .
T20697 852-861 VBN denotes Protected
T20698 862-868 NNS denotes probes
T20699 869-873 VBD denotes were
T20700 874-882 VBN denotes resolved
T20701 883-885 IN denotes on
T20702 886-887 DT denotes a
T20703 888-898 VBG denotes denaturing
T20704 899-903 CD denotes 4.75
T20705 903-904 NN denotes %
T20706 905-915 NN denotes acrylamide
T20707 916-919 NN denotes gel
T20708 919-920 , denotes ,
T20709 921-926 VBD denotes dried
T20710 926-927 , denotes ,
T20711 928-931 CC denotes and
T20712 932-938 VBD denotes imaged
T20713 939-944 VBG denotes using
T20714 945-946 DT denotes a
T20715 947-961 NNP denotes phosphorImager
T20716 962-963 -LRB- denotes (
T20717 963-972 NNP denotes Molecular
T20718 973-981 NNP denotes Dynamics
T20719 981-982 -RRB- denotes )
T20720 982-983 . denotes .
T20721 984-996 NNP denotes Densitometry
T20722 997-1000 VBD denotes was
T20723 1001-1010 VBN denotes performed
T20724 1011-1016 VBG denotes using
T20725 1017-1020 DT denotes the
T20726 1021-1031 NNP denotes ImageQuant
T20727 1032-1034 NNP denotes TL
T20728 1035-1040 CD denotes v2005
T20729 1041-1049 NN denotes software
T20730 1050-1051 -LRB- denotes (
T20731 1051-1053 NNP denotes GE
T20732 1054-1064 NNP denotes Healthcare
T20733 1064-1065 -RRB- denotes )
T20734 1065-1066 . denotes .
R16046 T20534 T20536 amod Rnase,assay
R16047 T20535 T20536 compound protection,assay
R16048 T20536 T20536 ROOT assay,assay
R16049 T20537 T20536 punct .,assay
R16050 T20538 T20539 amod Total,RNA
R16051 T20539 T20541 nsubjpass RNA,isolated
R16052 T20540 T20541 auxpass was,isolated
R16053 T20541 T20541 ROOT isolated,isolated
R16054 T20542 T20541 prep from,isolated
R16055 T20543 T20547 nummod CD19,cells
R16056 T20544 T20547 nummod +,cells
R16057 T20545 T20547 amod MACS-purified,cells
R16058 T20546 T20547 compound B,cells
R16059 T20547 T20542 pobj cells,from
R16060 T20548 T20541 advcl using,isolated
R16061 T20549 T20553 det the,kit
R16062 T20550 T20553 nmod Rneasy,kit
R16063 T20551 T20553 amod midi,kit
R16064 T20552 T20553 compound purification,kit
R16065 T20553 T20548 dobj kit,using
R16066 T20554 T20553 prep with,kit
R16067 T20555 T20556 compound Dnase,treatment
R16068 T20556 T20554 pobj treatment,with
R16069 T20557 T20541 punct ",",isolated
R16070 T20558 T20541 prep according,isolated
R16071 T20559 T20558 prep to,according
R16072 T20560 T20561 det the,manufacturer
R16073 T20561 T20563 poss manufacturer,instructions
R16074 T20562 T20561 case 's,manufacturer
R16075 T20563 T20559 pobj instructions,to
R16076 T20564 T20565 punct (,Qiagen
R16077 T20565 T20563 appos Qiagen,instructions
R16078 T20566 T20563 punct ),instructions
R16079 T20567 T20541 punct .,isolated
R16080 T20568 T20571 det The,template
R16081 T20569 T20571 amod mCK-1,template
R16082 T20570 T20571 compound probe,template
R16083 T20571 T20578 nsubjpass template,labeled
R16084 T20572 T20571 acl set,template
R16085 T20573 T20575 punct (,Biosciences
R16086 T20574 T20575 compound BD,Biosciences
R16087 T20575 T20572 appos Biosciences,set
R16088 T20576 T20572 punct ),set
R16089 T20577 T20578 auxpass was,labeled
R16090 T20578 T20578 ROOT labeled,labeled
R16091 T20579 T20578 advcl using,labeled
R16092 T20580 T20584 det the,Kit
R16093 T20581 T20584 compound In,Kit
R16094 T20582 T20583 compound Vitro,Transcription
R16095 T20583 T20584 compound Transcription,Kit
R16096 T20584 T20579 dobj Kit,using
R16097 T20585 T20578 prep according,labeled
R16098 T20586 T20585 prep to,according
R16099 T20587 T20588 det the,manufacturer
R16100 T20588 T20590 poss manufacturer,instructions
R16101 T20589 T20588 case 's,manufacturer
R16102 T20590 T20586 pobj instructions,to
R16103 T20591 T20593 punct (,Biosciences
R16104 T20592 T20593 compound BD,Biosciences
R16105 T20593 T20590 appos Biosciences,instructions
R16106 T20594 T20590 punct ),instructions
R16107 T20595 T20578 punct .,labeled
R16108 T20596 T20605 advmod Briefly,labeled
R16109 T20597 T20605 punct ",",labeled
R16110 T20598 T20599 nummod 50,ng
R16111 T20599 T20605 nsubjpass ng,labeled
R16112 T20600 T20599 prep of,ng
R16113 T20601 T20603 amod mCK-1,set
R16114 T20602 T20603 compound probe,set
R16115 T20603 T20600 pobj set,of
R16116 T20604 T20605 auxpass was,labeled
R16117 T20605 T20605 ROOT labeled,labeled
R16118 T20606 T20605 prep with,labeled
R16119 T20607 T20610 compound [,UTP
R16120 T20608 T20610 compound α-32P,UTP
R16121 T20609 T20610 compound ],UTP
R16122 T20610 T20606 pobj UTP,with
R16123 T20611 T20605 advcl using,labeled
R16124 T20612 T20614 nummod T7,polymerase
R16125 T20613 T20614 compound RNA,polymerase
R16126 T20614 T20611 dobj polymerase,using
R16127 T20615 T20605 cc and,labeled
R16128 T20616 T20605 conj purified,labeled
R16129 T20617 T20616 xcomp using,purified
R16130 T20618 T20619 compound Sephadex,G-50
R16131 T20619 T20620 compound G-50,columns
R16132 T20620 T20617 dobj columns,using
R16133 T20621 T20620 punct (,columns
R16134 T20622 T20623 compound NucAway,Spin
R16135 T20623 T20624 compound Spin,column
R16136 T20624 T20620 appos column,columns
R16137 T20625 T20624 punct ",",column
R16138 T20626 T20624 appos Ambion,column
R16139 T20627 T20624 punct ),column
R16140 T20628 T20605 punct .,labeled
R16141 T20629 T20631 det The,probe
R16142 T20630 T20631 amod labeled,probe
R16143 T20631 T20633 nsubjpass probe,quantitated
R16144 T20632 T20633 auxpass was,quantitated
R16145 T20633 T20633 ROOT quantitated,quantitated
R16146 T20634 T20633 advcl using,quantitated
R16147 T20635 T20636 det a,scintillation
R16148 T20636 T20634 dobj scintillation,using
R16149 T20637 T20634 advmod counter,using
R16150 T20638 T20634 punct ",",using
R16151 T20639 T20633 cc and,quantitated
R16152 T20640 T20644 nummod 6,cpm
R16153 T20641 T20644 nmod ×,cpm
R16154 T20642 T20641 nummod 105,×
R16155 T20643 T20644 compound cherenkov,cpm
R16156 T20644 T20646 nsubjpass cpm,used
R16157 T20645 T20646 auxpass was,used
R16158 T20646 T20633 conj used,quantitated
R16159 T20647 T20648 aux to,hybridize
R16160 T20648 T20646 xcomp hybridize,used
R16161 T20649 T20648 prep to,hybridize
R16162 T20650 T20651 nummod 4,μg
R16163 T20651 T20649 pobj μg,to
R16164 T20652 T20651 prep of,μg
R16165 T20653 T20654 amod total,RNA
R16166 T20654 T20652 pobj RNA,of
R16167 T20655 T20648 advcl using,hybridize
R16168 T20656 T20658 det the,kit
R16169 T20657 T20658 compound RPA,kit
R16170 T20658 T20655 dobj kit,using
R16171 T20659 T20658 punct (,kit
R16172 T20660 T20661 compound BD,Biosciences
R16173 T20661 T20658 appos Biosciences,kit
R16174 T20662 T20658 punct ),kit
R16175 T20663 T20646 punct .,used
R16176 T20664 T20666 nsubjpass Samples,denatured
R16177 T20665 T20666 auxpass were,denatured
R16178 T20666 T20666 ROOT denatured,denatured
R16179 T20667 T20666 prep at,denatured
R16180 T20668 T20669 nummod 90,°
R16181 T20669 T20667 pobj °,at
R16182 T20670 T20666 conj C,denatured
R16183 T20671 T20670 cc and,C
R16184 T20672 T20670 conj hybridized,C
R16185 T20673 T20672 prep at,hybridized
R16186 T20674 T20676 nummod 56,C
R16187 T20675 T20676 nummod °,C
R16188 T20676 T20677 compound C,overnight
R16189 T20677 T20673 pobj overnight,at
R16190 T20678 T20666 punct .,denatured
R16191 T20679 T20680 compound Single-stranded,RNA
R16192 T20680 T20682 nsubjpass RNA,digested
R16193 T20681 T20682 auxpass was,digested
R16194 T20682 T20682 ROOT digested,digested
R16195 T20683 T20682 prep with,digested
R16196 T20684 T20685 det a,mixture
R16197 T20685 T20683 pobj mixture,with
R16198 T20686 T20685 prep of,mixture
R16199 T20687 T20688 compound Rnase,A
R16200 T20688 T20686 pobj A,of
R16201 T20689 T20688 cc and,A
R16202 T20690 T20688 conj T1,A
R16203 T20691 T20690 punct ",",T1
R16204 T20692 T20682 cc and,digested
R16205 T20693 T20682 conj precipitated,digested
R16206 T20694 T20693 xcomp using,precipitated
R16207 T20695 T20694 dobj isopropanol,using
R16208 T20696 T20682 punct .,digested
R16209 T20697 T20698 amod Protected,probes
R16210 T20698 T20700 nsubjpass probes,resolved
R16211 T20699 T20700 auxpass were,resolved
R16212 T20700 T20700 ROOT resolved,resolved
R16213 T20701 T20700 prep on,resolved
R16214 T20702 T20707 det a,gel
R16215 T20703 T20707 amod denaturing,gel
R16216 T20704 T20705 nummod 4.75,%
R16217 T20705 T20707 compound %,gel
R16218 T20706 T20707 compound acrylamide,gel
R16219 T20707 T20701 pobj gel,on
R16220 T20708 T20709 punct ",",dried
R16221 T20709 T20700 conj dried,resolved
R16222 T20710 T20709 punct ",",dried
R16223 T20711 T20709 cc and,dried
R16224 T20712 T20709 conj imaged,dried
R16225 T20713 T20712 xcomp using,imaged
R16226 T20714 T20715 det a,phosphorImager
R16227 T20715 T20713 dobj phosphorImager,using
R16228 T20716 T20718 punct (,Dynamics
R16229 T20717 T20718 compound Molecular,Dynamics
R16230 T20718 T20715 appos Dynamics,phosphorImager
R16231 T20719 T20715 punct ),phosphorImager
R16232 T20720 T20709 punct .,dried
R16233 T20721 T20723 nsubjpass Densitometry,performed
R16234 T20722 T20723 auxpass was,performed
R16235 T20723 T20723 ROOT performed,performed
R16236 T20724 T20723 advcl using,performed
R16237 T20725 T20729 det the,software
R16238 T20726 T20729 nmod ImageQuant,software
R16239 T20727 T20729 nmod TL,software
R16240 T20728 T20729 nummod v2005,software
R16241 T20729 T20724 dobj software,using
R16242 T20730 T20729 punct (,software
R16243 T20731 T20732 compound GE,Healthcare
R16244 T20732 T20729 appos Healthcare,software
R16245 T20733 T20729 punct ),software
R16246 T20734 T20723 punct .,performed

GO-BP

Id Subject Object Predicate Lexical cue
T20343 273-286 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription

GO-CC

Id Subject Object Predicate Lexical cue
T20744 74-79 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20745 656-659 http://purl.obolibrary.org/obo/GO_0005662 denotes RPA

sentences

Id Subject Object Predicate Lexical cue
T20334 0-23 Sentence denotes Rnase protection assay.
T20335 24-195 Sentence denotes Total RNA was isolated from CD19+ MACS-purified B cells using the Rneasy midi purification kit with Dnase treatment, according to the manufacturer's instructions (Qiagen).
T20336 196-353 Sentence denotes The mCK-1 probe template set (BD Biosciences) was labeled using the In Vitro Transcription Kit according to the manufacturer's instructions (BD Biosciences).
T20337 354-511 Sentence denotes Briefly, 50 ng of mCK-1 probe set was labeled with [α-32P]UTP using T7 RNA polymerase and purified using Sephadex G-50 columns (NucAway Spin column, Ambion).
T20338 512-681 Sentence denotes The labeled probe was quantitated using a scintillation counter, and 6 × 105 cherenkov cpm was used to hybridize to 4 μg of total RNA using the RPA kit (BD Biosciences).
T20339 682-748 Sentence denotes Samples were denatured at 90 °C and hybridized at 56 °C overnight.
T20340 749-851 Sentence denotes Single-stranded RNA was digested with a mixture of Rnase A and T1, and precipitated using isopropanol.
T20341 852-983 Sentence denotes Protected probes were resolved on a denaturing 4.75% acrylamide gel, dried, and imaged using a phosphorImager (Molecular Dynamics).
T20342 984-1066 Sentence denotes Densitometry was performed using the ImageQuant TL v2005 software (GE Healthcare).
T327 0-23 Sentence denotes Rnase protection assay.
T328 24-195 Sentence denotes Total RNA was isolated from CD19+ MACS-purified B cells using the Rneasy midi purification kit with Dnase treatment, according to the manufacturer's instructions (Qiagen).
T329 196-353 Sentence denotes The mCK-1 probe template set (BD Biosciences) was labeled using the In Vitro Transcription Kit according to the manufacturer's instructions (BD Biosciences).
T330 354-511 Sentence denotes Briefly, 50 ng of mCK-1 probe set was labeled with [α-32P]UTP using T7 RNA polymerase and purified using Sephadex G-50 columns (NucAway Spin column, Ambion).
T331 512-681 Sentence denotes The labeled probe was quantitated using a scintillation counter, and 6 × 105 cherenkov cpm was used to hybridize to 4 μg of total RNA using the RPA kit (BD Biosciences).
T332 682-748 Sentence denotes Samples were denatured at 90 °C and hybridized at 56 °C overnight.
T333 749-851 Sentence denotes Single-stranded RNA was digested with a mixture of Rnase A and T1, and precipitated using isopropanol.
T334 852-983 Sentence denotes Protected probes were resolved on a denaturing 4.75% acrylamide gel, dried, and imaged using a phosphorImager (Molecular Dynamics).
T335 984-1066 Sentence denotes Densitometry was performed using the ImageQuant TL v2005 software (GE Healthcare).

events-check-again

Id Subject Object Predicate Lexical cue
T20761 52-56 Protein denotes CD19
T20762 800-807 Protein denotes Rnase A
T20763 812-814 Protein denotes T1

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T20752 0-5 Protein denotes Rnase
T20753 52-56 Protein denotes CD19
T20754 58-62 Protein denotes MACS
T20755 124-129 Protein denotes Dnase
T20756 200-205 Protein denotes mCK-1
T20757 372-387 Protein denotes mCK-1 probe set
T20758 422-439 Protein denotes T7 RNA polymerase
T20759 490-494 Protein denotes Spin
T20760 800-805 Protein denotes Rnase

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T20331 52-56 Protein denotes CD19
T20332 800-807 Protein denotes Rnase A
T20333 812-814 Protein denotes T1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20533 52-56 P15391 denotes CD19

test2

Id Subject Object Predicate Lexical cue
T20328 52-56 Protein denotes CD19
T20329 800-807 Protein denotes Rnase A
T20330 812-814 Protein denotes T1