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PMC:2065877 / 39286-39508 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17997602-11034392-98185770 218-220 11034392 denotes 66

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15462 0-4 NN denotes CD40
T15463 5-9 RB denotes also
T15464 10-17 VB denotes induces
T15465 18-32 NN denotes downregulation
T15466 33-35 IN denotes of
T15467 36-39 DT denotes the
T15468 40-44 NN denotes cell
T15469 45-50 NN denotes cycle
T15470 51-60 NN denotes inhibitor
T15471 61-64 NN denotes p27
T15472 65-72 IN denotes through
T15473 73-74 DT denotes a
T15474 75-89 JJ denotes PI3K-dependent
T15475 90-96 NN denotes manner
T15476 96-97 -COMMA- denotes ,
T15477 98-101 CC denotes and
T15478 102-105 DT denotes the
T15479 106-110 NN denotes LMP1
T15480 111-119 NN denotes lymphoma
T15481 120-125 NN denotes cells
T15482 126-130 RB denotes also
T15483 131-134 VB denotes had
T15484 135-144 VB denotes decreased
T15485 145-151 NN denotes levels
T15486 152-154 IN denotes of
T15487 155-158 NN denotes p27
T15488 159-163 IN denotes with
T15489 164-179 NN denotes phosphorylation
T15490 180-182 IN denotes of
T15491 183-185 NN denotes Rb
T15492 186-189 CC denotes and
T15493 190-199 VB denotes increased
T15494 200-204 NN denotes Cdk2
T15495 205-206 -LRB- denotes (
T15496 206-212 NN denotes Figure
T15497 213-215 NN denotes 6C
T15498 215-216 -RRB- denotes )
T15499 217-218 -LRB- denotes [
T15500 218-220 CD denotes 66
T15501 220-221 -RRB- denotes ]
R11753 T15462 T15464 arg1Of CD40,induces
R11754 T15464 T15463 arg1Of induces,also
R11755 T15464 T15472 arg1Of induces,through
R11756 T15464 T15477 arg1Of induces,and
R11757 T15465 T15464 arg2Of downregulation,induces
R11758 T15465 T15466 arg1Of downregulation,of
R11759 T15471 T15466 arg2Of p27,of
R11760 T15471 T15467 arg1Of p27,the
R11761 T15471 T15468 arg1Of p27,cell
R11762 T15471 T15469 arg1Of p27,cycle
R11763 T15471 T15470 arg1Of p27,inhibitor
R11764 T15475 T15472 arg2Of manner,through
R11765 T15475 T15473 arg1Of manner,a
R11766 T15475 T15474 arg1Of manner,PI3K-dependent
R11767 T15477 T15476 arg1Of and,","
R11768 T15481 T15478 arg1Of cells,the
R11769 T15481 T15479 arg1Of cells,LMP1
R11770 T15481 T15480 arg1Of cells,lymphoma
R11771 T15481 T15483 arg1Of cells,had
R11772 T15481 T15484 arg1Of cells,decreased
R11773 T15484 T15477 arg2Of decreased,and
R11774 T15484 T15482 arg1Of decreased,also
R11775 T15484 T15483 arg2Of decreased,had
R11776 T15484 T15488 arg1Of decreased,with
R11777 T15484 T15499 arg1Of decreased,[
R11778 T15485 T15484 arg2Of levels,decreased
R11779 T15485 T15486 arg1Of levels,of
R11780 T15487 T15486 arg2Of p27,of
R11781 T15489 T15490 arg1Of phosphorylation,of
R11782 T15489 T15492 arg1Of phosphorylation,and
R11783 T15491 T15490 arg2Of Rb,of
R11784 T15492 T15488 arg2Of and,with
R11785 T15494 T15492 arg2Of Cdk2,and
R11786 T15494 T15493 arg2Of Cdk2,increased
R11787 T15494 T15495 arg1Of Cdk2,(
R11788 T15497 T15495 arg2Of 6C,(
R11789 T15497 T15496 arg1Of 6C,Figure
R11790 T15498 T15495 arg3Of ),(
R11791 T15500 T15499 arg2Of 66,[
R11792 T15501 T15499 arg3Of ],[

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16993 0-4 CD denotes CD40
T16994 5-9 RB denotes also
T16995 10-17 VBZ denotes induces
T16996 18-32 NN denotes downregulation
T16997 33-35 IN denotes of
T16998 36-39 DT denotes the
T16999 40-44 NN denotes cell
T17000 45-50 NN denotes cycle
T17001 51-60 NN denotes inhibitor
T17002 61-64 CD denotes p27
T17003 65-72 IN denotes through
T17004 73-74 DT denotes a
T17005 75-89 JJ denotes PI3K-dependent
T17006 90-96 NN denotes manner
T17007 96-97 , denotes ,
T17008 98-101 CC denotes and
T17009 102-105 DT denotes the
T17010 106-110 NNP denotes LMP1
T17011 111-119 NN denotes lymphoma
T17012 120-125 NNS denotes cells
T17013 126-130 RB denotes also
T17014 131-134 VBD denotes had
T17015 135-144 VBN denotes decreased
T17016 145-151 NNS denotes levels
T17017 152-154 IN denotes of
T17018 155-158 CD denotes p27
T17019 159-163 IN denotes with
T17020 164-179 NN denotes phosphorylation
T17021 180-182 IN denotes of
T17022 183-185 NNP denotes Rb
T17023 186-189 CC denotes and
T17024 190-199 VBD denotes increased
T17025 200-204 NNP denotes Cdk2
T17026 205-206 -LRB- denotes (
T17027 206-212 NNP denotes Figure
T17028 213-215 NNP denotes 6C
T17029 215-216 -RRB- denotes )
T17030 217-218 NNP denotes [
T17031 218-220 CD denotes 66
T17032 220-221 NNP denotes ]
T17033 221-222 . denotes .
R13161 T17032 T17024 dobj ],increased
R13163 T17033 T17024 punct .,increased
R13223 T16993 T16995 nsubj CD40,induces
R13227 T16994 T16995 advmod also,induces
R13232 T16995 T16995 ROOT induces,induces
R13236 T16996 T16995 dobj downregulation,induces
R13240 T16997 T16996 prep of,downregulation
R13244 T16998 T17001 det the,inhibitor
R13252 T16999 T17000 compound cell,cycle
R13256 T17000 T17001 compound cycle,inhibitor
R13260 T17001 T16997 pobj inhibitor,of
R13264 T17002 T17001 nummod p27,inhibitor
R13269 T17003 T16995 prep through,induces
R13274 T17004 T17006 det a,manner
R13278 T17005 T17006 amod PI3K-dependent,manner
R13282 T17006 T17003 pobj manner,through
R13286 T17007 T16995 punct ",",induces
R13289 T17008 T16995 cc and,induces
R13290 T17009 T17012 det the,cells
R13291 T17010 T17012 compound LMP1,cells
R13293 T17011 T17012 compound lymphoma,cells
R13300 T17012 T17015 nsubj cells,decreased
R13303 T17013 T17015 advmod also,decreased
R13308 T17014 T17015 aux had,decreased
R13312 T17015 T17016 amod decreased,levels
R13316 T17016 T17024 nsubj levels,increased
R13321 T17017 T17016 prep of,levels
R13325 T17018 T17017 pobj p27,of
R13330 T17019 T17016 prep with,levels
R13335 T17020 T17019 pobj phosphorylation,with
R13339 T17021 T17020 prep of,phosphorylation
R13343 T17022 T17021 pobj Rb,of
R13350 T17023 T17016 cc and,levels
R13354 T17024 T16995 conj increased,induces
R13358 T17025 T17032 nmod Cdk2,]
R13363 T17026 T17028 punct (,6C
R13367 T17027 T17028 compound Figure,6C
R13372 T17028 T17025 appos 6C,Cdk2
R13376 T17029 T17028 punct ),6C
R13380 T17030 T17025 conj [,Cdk2
R13384 T17031 T17032 nummod 66,]

GO-BP

Id Subject Object Predicate Lexical cue
T14599 75-79 http://purl.obolibrary.org/obo/GO_0016303 denotes PI3K
T14602 18-50 http://purl.obolibrary.org/obo/GO_1901988 denotes downregulation of the cell cycle
T14603 18-50 http://purl.obolibrary.org/obo/GO_1901994 denotes downregulation of the cell cycle
T14604 18-50 http://purl.obolibrary.org/obo/GO_1901977 denotes downregulation of the cell cycle
T14605 18-50 http://purl.obolibrary.org/obo/GO_1903451 denotes downregulation of the cell cycle
T14606 40-50 http://purl.obolibrary.org/obo/GO_0007049 denotes cell cycle
T14608 164-179 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T17610 75-79 http://purl.obolibrary.org/obo/GO_0016303 denotes PI3K

GO-CC

Id Subject Object Predicate Lexical cue
T17624 40-44 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T14532 0-222 Sentence denotes CD40 also induces downregulation of the cell cycle inhibitor p27 through a PI3K-dependent manner, and the LMP1 lymphoma cells also had decreased levels of p27 with phosphorylation of Rb and increased Cdk2 (Figure 6C) [66].
T264 0-222 Sentence denotes CD40 also induces downregulation of the cell cycle inhibitor p27 through a PI3K-dependent manner, and the LMP1 lymphoma cells also had decreased levels of p27 with phosphorylation of Rb and increased Cdk2 (Figure 6C) [66].

events-check-again

Id Subject Object Predicate Lexical cue
T18193 0-4 Protein denotes CD40
T18194 10-17 Positive_regulation denotes induces
T18195 18-32 Negative_regulation denotes downregulation
T18196 61-64 Protein denotes p27
T18197 106-110 Protein denotes LMP1
T18198 135-144 Negative_regulation denotes decreased
T18199 155-158 Protein denotes p27
T18200 164-179 Phosphorylation denotes phosphorylation
T18201 183-185 Protein denotes Rb
T18202 190-199 Positive_regulation denotes increased
T18203 200-204 Protein denotes Cdk2
R14009 T18193 T18194 causeOf CD40,induces
R14011 T18195 T18194 themeOf downregulation,induces
R14012 T18196 T18195 themeOf p27,downregulation
R14013 T18199 T18198 themeOf p27,decreased
R14014 T18201 T18200 themeOf Rb,phosphorylation
R14016 T18203 T18202 themeOf Cdk2,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18043 0-4 Protein denotes CD40
T18044 61-64 Protein denotes p27
T18045 75-79 Protein denotes PI3K
T18046 106-119 Protein denotes LMP1 lymphoma
T18047 155-158 Protein denotes p27
T18048 183-185 Protein denotes Rb
T18052 164-179 Phosphorylation denotes phosphorylation
T18053 164-179 Phosphorylation denotes phosphorylation
T18054 190-199 Positive_regulation denotes increased
T18055 10-17 Positive_regulation denotes induces
T18049 200-204 Protein denotes Cdk2
T18050 18-32 Negative_regulation denotes downregulation
T18051 135-144 Negative_regulation denotes decreased
R13930 T18043 T18055 causeOf CD40,induces
R13931 T18049 T18054 themeOf Cdk2,increased
R13932 T18050 T18055 themeOf downregulation,induces
R13933 T18044 T18050 themeOf p27,downregulation
R13934 T18047 T18051 themeOf p27,decreased
R13935 T18047 T18052 themeOf p27,phosphorylation
R13938 T18048 T18053 themeOf Rb,phosphorylation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T14416 0-4 Protein denotes CD40
T14417 10-17 Positive_regulation denotes induces
T14418 18-32 Negative_regulation denotes downregulation
T14419 61-64 Protein denotes p27
T14420 106-110 Protein denotes LMP1
T14421 135-144 Negative_regulation denotes decreased
T14422 155-158 Protein denotes p27
T14423 164-179 Phosphorylation denotes phosphorylation
T14424 183-185 Protein denotes Rb
T14425 190-199 Positive_regulation denotes increased
T14426 200-204 Protein denotes Cdk2
R10828 T14416 T14417 causeOf CD40,induces
R10829 T14418 T14417 themeOf downregulation,induces
R10830 T14419 T14418 themeOf p27,downregulation
R10831 T14422 T14421 themeOf p27,decreased
R10832 T14424 T14423 themeOf Rb,phosphorylation
R10833 T14426 T14425 themeOf Cdk2,increased

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16054 0-4 P25942 denotes CD40
T16055 61-64 P46527 denotes p27
T16056 106-110 P03230 denotes LMP1
T16057 155-158 P46527 denotes p27
T16058 183-185 P06400 denotes Rb
T16059 200-204 P24941 denotes Cdk2

test2

Id Subject Object Predicate Lexical cue
T14266 0-4 Protein denotes CD40
T14267 51-60 Negative_regulation denotes inhibitor
T14268 61-64 Protein denotes p27
T14269 106-110 Protein denotes LMP1
T14270 135-144 Negative_regulation denotes decreased
T14271 155-158 Protein denotes p27
T14272 164-179 Phosphorylation denotes phosphorylation
T14273 183-185 Protein denotes Rb
T14274 190-199 Positive_regulation denotes increased
T14275 200-204 Protein denotes Cdk2
R10771 T14268 T14267 themeOf p27,inhibitor
R10772 T14272 T14270 themeOf phosphorylation,decreased
R10773 T14273 T14272 themeOf Rb,phosphorylation
R10774 T14275 T14274 themeOf Cdk2,increased