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PMC:2065877 / 3915-4103 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17997602-7534202-98185712 74-76 7534202 denotes 20
17997602-7882172-98185713 77-79 7882172 denotes 21

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1244 0-2 CC denotes or
T1245 3-8 NN denotes CD40L
T1246 9-12 VB denotes are
T1247 13-19 JJ denotes unable
T1248 20-22 TO denotes to
T1249 23-27 VB denotes form
T1250 28-31 NN denotes GCs
T1251 32-34 IN denotes in
T1252 35-43 NN denotes response
T1253 44-46 TO denotes to
T1254 47-48 NN denotes T
T1255 49-63 JJ denotes cell–dependent
T1256 64-72 NN denotes antigens
T1257 73-74 -LRB- denotes [
T1258 74-79 CD denotes 20,21
T1259 79-80 -RRB- denotes ]
T1260 82-86 CC denotes Both
T1261 87-90 DT denotes the
T1262 91-99 NN denotes membrane
T1263 100-108 JJ denotes proximal
T1264 109-112 CC denotes and
T1265 113-119 JJ denotes distal
T1266 120-131 JJ denotes cytoplasmic
T1267 132-139 NN denotes regions
T1268 140-142 IN denotes of
T1269 143-147 NN denotes CD40
T1270 148-152 WDT denotes that
T1271 153-157 VB denotes bind
T1272 158-163 NN denotes TRAF6
T1273 164-167 CC denotes and
T1274 168-178 NN denotes TRAFs2/3/5
T1275 178-179 -COMMA- denotes ,
R878 T1245 T1244 arg2Of CD40L,or
R881 T1247 T1246 arg2Of unable,are
R882 T1249 T1247 arg2Of form,unable
R883 T1249 T1248 arg1Of form,to
R884 T1249 T1251 arg1Of form,in
R885 T1250 T1249 arg2Of GCs,form
R886 T1252 T1251 arg2Of response,in
R887 T1252 T1253 arg1Of response,to
R888 T1256 T1253 arg2Of antigens,to
R889 T1256 T1254 arg1Of antigens,T
R890 T1256 T1255 arg1Of antigens,cell–dependent
R891 T1256 T1257 arg1Of antigens,[
R892 T1258 T1257 arg2Of "20,21",[
R893 T1259 T1257 arg3Of ],[
R894 T1263 T1264 arg1Of proximal,and
R895 T1265 T1264 arg2Of distal,and
R896 T1267 T1260 arg1Of regions,Both
R897 T1267 T1261 arg1Of regions,the
R898 T1267 T1262 arg1Of regions,membrane
R899 T1267 T1263 arg1Of regions,proximal
R900 T1267 T1265 arg1Of regions,distal
R901 T1267 T1266 arg1Of regions,cytoplasmic
R902 T1267 T1268 arg1Of regions,of
R903 T1267 T1270 arg1Of regions,that
R904 T1267 T1271 arg1Of regions,bind
R907 T1269 T1268 arg2Of CD40,of
R908 T1271 T1275 arg1Of bind,","
R910 T1272 T1273 arg1Of TRAF6,and
R911 T1273 T1271 arg2Of and,bind
R912 T1274 T1273 arg2Of TRAFs2/3/5,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2154 0-2 CC denotes or
T2155 3-8 NNP denotes CD40L
T2156 9-12 VBP denotes are
T2157 13-19 JJ denotes unable
T2158 20-22 TO denotes to
T2159 23-27 VB denotes form
T2160 28-31 NNS denotes GCs
T2161 32-34 IN denotes in
T2162 35-43 NN denotes response
T2163 44-46 TO denotes to
T2164 47-48 NNP denotes T
T2165 49-53 NN denotes cell
T2166 54-63 JJ denotes dependent
T2167 64-72 NNS denotes antigens
T2168 73-74 NNP denotes [
T2169 74-79 CD denotes 20,21
T2170 79-80 NNP denotes ]
T2171 80-81 . denotes .
T2172 82-86 DT denotes Both
T2173 87-90 DT denotes the
T2174 91-99 NN denotes membrane
T2175 100-108 NN denotes proximal
T2176 109-112 CC denotes and
T2177 113-119 JJ denotes distal
T2178 120-131 JJ denotes cytoplasmic
T2179 132-139 NNS denotes regions
T2180 140-142 IN denotes of
T2181 143-147 NNP denotes CD40
T2182 148-152 IN denotes that
T2183 153-157 NN denotes bind
T2184 158-163 CD denotes TRAF6
T2185 164-167 CC denotes and
T2186 168-178 CD denotes TRAFs2/3/5
T2187 178-179 , denotes ,
R1700 T2157 T2156 acomp unable,are
R1702 T2158 T2159 aux to,form
R1703 T2159 T2157 xcomp form,unable
R1704 T2160 T2159 dobj GCs,form
R1706 T2161 T2159 prep in,form
R1707 T2162 T2161 pobj response,in
R1709 T2163 T2162 prep to,response
R1710 T2164 T2165 compound T,cell
R1711 T2165 T2163 pobj cell,to
R1713 T2166 T2167 amod dependent,antigens
R1714 T2167 T2159 dobj antigens,form
R1716 T2168 T2170 compound [,]
R1717 T2169 T2170 compound "20,21",]
R1718 T2170 T2167 appos ],antigens
R1721 T2172 T2175 preconj Both,proximal
R1722 T2173 T2175 det the,proximal
R1725 T2174 T2175 compound membrane,proximal
R1728 T2176 T2175 cc and,proximal
R1729 T2177 T2179 amod distal,regions
R1730 T2178 T2179 amod cytoplasmic,regions
R1732 T2179 T2175 conj regions,proximal
R1733 T2180 T2179 prep of,regions
R1735 T2181 T2180 pobj CD40,of
R1740 T2184 T2183 nummod TRAF6,bind
R1742 T2185 T2183 cc and,bind
R1743 T2186 T2183 conj TRAFs2/3/5,bind
R1745 T2187 T2183 punct ",",bind

GO-CC

Id Subject Object Predicate Lexical cue
T2677 49-53 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2685 91-99 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane

events-check-again

Id Subject Object Predicate Lexical cue
T3003 3-8 Protein denotes CD40L
T3004 91-108 Entity denotes membrane proximal
T3005 113-139 Entity denotes distal cytoplasmic regions
T3006 143-147 Protein denotes CD40
T3007 153-157 Binding denotes bind
T3008 153-157 Binding denotes bind
T3009 153-157 Binding denotes bind
T3010 153-157 Binding denotes bind
T3011 158-163 Protein denotes TRAF6
T3012 168-174 Protein denotes TRAFs2
T3013 175-176 Protein denotes 3
T3014 177-178 Protein denotes 5
R2365 T3004 T3008 themeOf membrane proximal,bind
R2366 T3004 T3006 partOf membrane proximal,CD40
R2367 T3005 T3010 themeOf distal cytoplasmic regions,bind
R2368 T3005 T3006 partOf distal cytoplasmic regions,CD40
R2369 T3005 T3009 themeOf distal cytoplasmic regions,bind
R2370 T3005 T3007 themeOf distal cytoplasmic regions,bind
R2371 T3011 T3008 themeOf TRAF6,bind
R2372 T3012 T3010 themeOf TRAFs2,bind
R2373 T3013 T3009 themeOf 3,bind
R2374 T3014 T3007 themeOf 5,bind

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2911 3-8 Protein denotes CD40L
T2914 143-147 Protein denotes CD40
T2915 158-163 Protein denotes TRAF6
T2916 132-139 Entity denotes regions
T2917 153-157 Binding denotes bind
T2918 153-157 Binding denotes bind
R2345 T2914 T2917 themeOf CD40,bind
R2346 T2914 T2918 themeOf CD40,bind
R2347 T2914 T2916 partOf CD40,regions
R2348 T2915 T2918 themeOf TRAF6,bind
R2349 T2916 T2917 Site regions,bind
R2353 T2916 T2918 Site regions,bind

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T717 3-8 Protein denotes CD40L
T718 91-108 Entity denotes membrane proximal
T719 113-139 Entity denotes distal cytoplasmic regions
T720 143-147 Protein denotes CD40
T721 153-157 Binding denotes bind
T722 153-157 Binding denotes bind
T723 153-157 Binding denotes bind
T724 153-157 Binding denotes bind
T725 158-163 Protein denotes TRAF6
T726 168-174 Protein denotes TRAFs2
T727 175-176 Protein denotes 3
T728 177-178 Protein denotes 5
R474 T718 T722 themeOf membrane proximal,bind
R475 T718 T720 partOf membrane proximal,CD40
R476 T719 T724 themeOf distal cytoplasmic regions,bind
R477 T719 T720 partOf distal cytoplasmic regions,CD40
R478 T719 T723 themeOf distal cytoplasmic regions,bind
R479 T719 T721 themeOf distal cytoplasmic regions,bind
R480 T725 T722 themeOf TRAF6,bind
R481 T726 T724 themeOf TRAFs2,bind
R482 T727 T723 themeOf 3,bind
R483 T728 T721 themeOf 5,bind

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1734 3-8 P29965 denotes CD40L
T1735 143-147 P25942 denotes CD40
T1736 158-163 Q9Y4K3 denotes TRAF6

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T634 3-8 Protein denotes CD40L
T635 120-139 Entity denotes cytoplasmic regions
T636 143-147 Protein denotes CD40
T637 153-157 Binding denotes bind true true
T638 158-163 Protein denotes TRAF6 true true
T639 168-174 Protein denotes TRAFs2
T640 175-176 Protein denotes 3
T641 177-178 Protein denotes 5
R436 T635 T636 partOf cytoplasmic regions,CD40
R437 T638 T637 themeOf TRAF6,bind
R438 T639 T637 themeOf TRAFs2,bind
R439 T640 T637 themeOf 3,bind
R440 T641 T637 themeOf 5,bind