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PMC:2065877 / 3809-3996 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17997602-7534202-98185712 180-182 7534202 denotes 20
17997602-7882172-98185713 183-185 7882172 denotes 21

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1224 0-2 FW denotes In
T1225 3-7 FW denotes vivo
T1226 7-8 -COMMA- denotes ,
T1227 9-13 NN denotes CD40
T1228 14-23 NN denotes signaling
T1229 24-26 VB denotes is
T1230 27-36 JJ denotes necessary
T1231 37-40 IN denotes for
T1232 41-49 JJ denotes germinal
T1233 50-56 NN denotes center
T1234 57-58 -LRB- denotes (
T1235 58-60 NN denotes GC
T1236 60-61 -RRB- denotes )
T1237 62-71 NN denotes formation
T1238 72-76 JJ denotes such
T1239 77-81 IN denotes that
T1240 82-86 NN denotes mice
T1241 87-96 JJ denotes deficient
T1242 97-100 IN denotes for
T1243 101-105 NN denotes CD40
T1244 106-108 CC denotes or
T1245 109-114 NN denotes CD40L
T1246 115-118 VB denotes are
T1247 119-125 JJ denotes unable
T1248 126-128 TO denotes to
T1249 129-133 VB denotes form
T1250 134-137 NN denotes GCs
T1251 138-140 IN denotes in
T1252 141-149 NN denotes response
T1253 150-152 TO denotes to
T1254 153-154 NN denotes T
T1255 155-169 JJ denotes cell–dependent
T1256 170-178 NN denotes antigens
T1257 179-180 -LRB- denotes [
T1258 180-185 CD denotes 20,21
T1259 185-186 -RRB- denotes ]
R856 T1224 T1229 modOf In,is
R857 T1228 T1227 arg1Of signaling,CD40
R858 T1228 T1229 arg1Of signaling,is
R859 T1228 T1230 arg1Of signaling,necessary
R860 T1229 T1225 arg1Of is,vivo
R861 T1229 T1226 arg1Of is,","
R862 T1230 T1229 arg2Of necessary,is
R863 T1230 T1231 arg1Of necessary,for
R864 T1233 T1231 arg2Of center,for
R865 T1233 T1232 arg1Of center,germinal
R866 T1233 T1234 arg1Of center,(
R867 T1235 T1234 arg2Of GC,(
R868 T1236 T1234 arg3Of ),(
R869 T1237 T1238 arg1Of formation,such
R870 T1238 T1224 arg1Of such,In
R871 T1240 T1241 arg1Of mice,deficient
R872 T1240 T1246 arg1Of mice,are
R873 T1240 T1247 arg1Of mice,unable
R874 T1240 T1249 arg1Of mice,form
R875 T1241 T1242 arg1Of deficient,for
R876 T1243 T1244 arg1Of CD40,or
R877 T1244 T1242 arg2Of or,for
R878 T1245 T1244 arg2Of CD40L,or
R879 T1246 T1238 arg2Of are,such
R880 T1246 T1239 arg1Of are,that
R881 T1247 T1246 arg2Of unable,are
R882 T1249 T1247 arg2Of form,unable
R883 T1249 T1248 arg1Of form,to
R884 T1249 T1251 arg1Of form,in
R885 T1250 T1249 arg2Of GCs,form
R886 T1252 T1251 arg2Of response,in
R887 T1252 T1253 arg1Of response,to
R888 T1256 T1253 arg2Of antigens,to
R889 T1256 T1254 arg1Of antigens,T
R890 T1256 T1255 arg1Of antigens,cell–dependent
R891 T1256 T1257 arg1Of antigens,[
R892 T1258 T1257 arg2Of "20,21",[
R893 T1259 T1257 arg3Of ],[

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2134 0-2 IN denotes In
T2135 3-7 NN denotes vivo
T2136 7-8 , denotes ,
T2137 9-13 NNP denotes CD40
T2138 14-23 VBG denotes signaling
T2139 24-26 VBZ denotes is
T2140 27-36 JJ denotes necessary
T2141 37-40 IN denotes for
T2142 41-49 JJ denotes germinal
T2143 50-56 NN denotes center
T2144 57-58 -LRB- denotes (
T2145 58-60 NNP denotes GC
T2146 60-61 -RRB- denotes )
T2147 62-71 NN denotes formation
T2148 72-76 JJ denotes such
T2149 77-81 IN denotes that
T2150 82-86 NNS denotes mice
T2151 87-96 NN denotes deficient
T2152 97-100 IN denotes for
T2153 101-105 NNP denotes CD40
T2154 106-108 CC denotes or
T2155 109-114 NNP denotes CD40L
T2156 115-118 VBP denotes are
T2157 119-125 JJ denotes unable
T2158 126-128 TO denotes to
T2159 129-133 VB denotes form
T2160 134-137 NNS denotes GCs
T2161 138-140 IN denotes in
T2162 141-149 NN denotes response
T2163 150-152 TO denotes to
T2164 153-154 NNP denotes T
T2165 155-159 NN denotes cell
T2166 160-169 JJ denotes dependent
T2167 170-178 NNS denotes antigens
T2168 179-180 NNP denotes [
T2169 180-185 CD denotes 20,21
T2170 185-186 NNP denotes ]
T2171 186-187 . denotes .
R1669 T2134 T2139 prep In,is
R1670 T2135 T2134 pobj vivo,In
R1672 T2136 T2139 punct ",",is
R1673 T2137 T2138 nsubj CD40,signaling
R1675 T2138 T2139 nsubj signaling,is
R1676 T2139 T2139 ROOT is,is
R1677 T2140 T2139 acomp necessary,is
R1679 T2141 T2139 prep for,is
R1680 T2142 T2143 amod germinal,center
R1681 T2143 T2141 pobj center,for
R1682 T2144 T2145 punct (,GC
R1684 T2145 T2143 appos GC,center
R1685 T2146 T2145 punct ),GC
R1686 T2147 T2148 npadvmod formation,such
R1688 T2148 T2139 acomp such,is
R1689 T2149 T2156 mark that,are
R1690 T2150 T2151 nsubj mice,deficient
R1692 T2151 T2156 nsubj deficient,are
R1693 T2152 T2151 prep for,deficient
R1694 T2153 T2152 pobj CD40,for
R1695 T2154 T2153 cc or,CD40
R1696 T2155 T2153 conj CD40L,CD40
R1699 T2156 T2148 acl are,such
R1700 T2157 T2156 acomp unable,are
R1702 T2158 T2159 aux to,form
R1703 T2159 T2157 xcomp form,unable
R1704 T2160 T2159 dobj GCs,form
R1706 T2161 T2159 prep in,form
R1707 T2162 T2161 pobj response,in
R1709 T2163 T2162 prep to,response
R1710 T2164 T2165 compound T,cell
R1711 T2165 T2163 pobj cell,to
R1713 T2166 T2167 amod dependent,antigens
R1714 T2167 T2159 dobj antigens,form
R1716 T2168 T2170 compound [,]
R1717 T2169 T2170 compound "20,21",]
R1718 T2170 T2167 appos ],antigens
R1720 T2171 T2139 punct .,is

UBERON-AE

Id Subject Object Predicate Lexical cue
T687 41-56 http://purl.obolibrary.org/obo/UBERON_0010754 denotes germinal center

GO-BP

Id Subject Object Predicate Lexical cue
T873 62-71 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T840 14-23 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T2677 155-159 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T791 0-187 Sentence denotes In vivo, CD40 signaling is necessary for germinal center (GC) formation such that mice deficient for CD40 or CD40L are unable to form GCs in response to T cell–dependent antigens [20,21].
T28 0-187 Sentence denotes In vivo, CD40 signaling is necessary for germinal center (GC) formation such that mice deficient for CD40 or CD40L are unable to form GCs in response to T cell–dependent antigens [20,21].

events-check-again

Id Subject Object Predicate Lexical cue
T2999 9-13 Protein denotes CD40
T3000 87-96 Negative_regulation denotes deficient
T3001 87-96 Negative_regulation denotes deficient
T3002 101-105 Protein denotes CD40
T3003 109-114 Protein denotes CD40L
R2363 T3002 T3001 themeOf CD40,deficient
R2364 T3003 T3000 themeOf CD40L,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2909 9-13 Protein denotes CD40
T2910 101-105 Protein denotes CD40
T2911 109-114 Protein denotes CD40L
T2912 87-96 Negative_regulation denotes deficient
T2913 87-96 Negative_regulation denotes deficient
R2339 T2910 T2912 themeOf CD40,deficient
R2342 T2911 T2913 themeOf CD40L,deficient

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T713 9-13 Protein denotes CD40
T714 87-96 Negative_regulation denotes deficient
T715 87-96 Negative_regulation denotes deficient
T716 101-105 Protein denotes CD40
T717 109-114 Protein denotes CD40L
R472 T716 T715 themeOf CD40,deficient
R473 T717 T714 themeOf CD40L,deficient

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1732 9-13 P25942 denotes CD40
T1733 101-105 P25942 denotes CD40
T1734 109-114 P29965 denotes CD40L

test2

Id Subject Object Predicate Lexical cue
T631 9-13 Protein denotes CD40
T632 87-96 Negative_regulation denotes deficient
T633 101-105 Protein denotes CD40
T634 109-114 Protein denotes CD40L
R434 T633 T632 themeOf CD40,deficient
R435 T634 T632 themeOf CD40L,deficient