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PMC:2065877 / 3721-4047 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17997602-7534202-98185712 268-270 7534202 denotes 20
17997602-7882172-98185713 271-273 7882172 denotes 21

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1209 0-1 -COMMA- denotes ,
T1210 2-9 JJ denotes primary
T1211 10-11 NN denotes B
T1212 12-17 NN denotes cells
T1213 18-21 MD denotes can
T1214 22-24 VB denotes be
T1215 25-35 VB denotes maintained
T1216 36-38 IN denotes by
T1217 39-43 NN denotes CD40
T1218 44-52 NN denotes ligation
T1219 53-55 IN denotes in
T1220 56-67 NN denotes combination
T1221 68-72 IN denotes with
T1222 73-76 NN denotes IL4
T1223 77-86 NN denotes treatment
T1224 88-90 FW denotes In
T1225 91-95 FW denotes vivo
T1226 95-96 -COMMA- denotes ,
T1227 97-101 NN denotes CD40
T1228 102-111 NN denotes signaling
T1229 112-114 VB denotes is
T1230 115-124 JJ denotes necessary
T1231 125-128 IN denotes for
T1232 129-137 JJ denotes germinal
T1233 138-144 NN denotes center
T1234 145-146 -LRB- denotes (
T1235 146-148 NN denotes GC
T1236 148-149 -RRB- denotes )
T1237 150-159 NN denotes formation
T1238 160-164 JJ denotes such
T1239 165-169 IN denotes that
T1240 170-174 NN denotes mice
T1241 175-184 JJ denotes deficient
T1242 185-188 IN denotes for
T1243 189-193 NN denotes CD40
T1244 194-196 CC denotes or
T1245 197-202 NN denotes CD40L
T1246 203-206 VB denotes are
T1247 207-213 JJ denotes unable
T1248 214-216 TO denotes to
T1249 217-221 VB denotes form
T1250 222-225 NN denotes GCs
T1251 226-228 IN denotes in
T1252 229-237 NN denotes response
T1253 238-240 TO denotes to
T1254 241-242 NN denotes T
T1255 243-257 JJ denotes cell–dependent
T1256 258-266 NN denotes antigens
T1257 267-268 -LRB- denotes [
T1258 268-273 CD denotes 20,21
T1259 273-274 -RRB- denotes ]
T1260 276-280 CC denotes Both
T1261 281-284 DT denotes the
T1262 285-293 NN denotes membrane
T1263 294-302 JJ denotes proximal
T1264 303-306 CC denotes and
T1265 307-313 JJ denotes distal
T1266 314-325 JJ denotes cytoplasmic
R839 T1212 T1210 arg1Of cells,primary
R840 T1212 T1211 arg1Of cells,B
R841 T1212 T1213 arg1Of cells,can
R842 T1212 T1214 arg1Of cells,be
R843 T1212 T1215 arg2Of cells,maintained
R845 T1215 T1209 arg1Of maintained,","
R846 T1215 T1213 arg2Of maintained,can
R847 T1215 T1214 arg2Of maintained,be
R848 T1215 T1219 arg1Of maintained,in
R849 T1218 T1215 arg1Of ligation,maintained
R850 T1218 T1216 arg2Of ligation,by
R851 T1218 T1217 arg1Of ligation,CD40
R852 T1220 T1219 arg2Of combination,in
R853 T1220 T1221 arg1Of combination,with
R854 T1223 T1221 arg2Of treatment,with
R855 T1223 T1222 arg1Of treatment,IL4
R856 T1224 T1229 modOf In,is
R857 T1228 T1227 arg1Of signaling,CD40
R858 T1228 T1229 arg1Of signaling,is
R859 T1228 T1230 arg1Of signaling,necessary
R860 T1229 T1225 arg1Of is,vivo
R861 T1229 T1226 arg1Of is,","
R862 T1230 T1229 arg2Of necessary,is
R863 T1230 T1231 arg1Of necessary,for
R864 T1233 T1231 arg2Of center,for
R865 T1233 T1232 arg1Of center,germinal
R866 T1233 T1234 arg1Of center,(
R867 T1235 T1234 arg2Of GC,(
R868 T1236 T1234 arg3Of ),(
R869 T1237 T1238 arg1Of formation,such
R870 T1238 T1224 arg1Of such,In
R871 T1240 T1241 arg1Of mice,deficient
R872 T1240 T1246 arg1Of mice,are
R873 T1240 T1247 arg1Of mice,unable
R874 T1240 T1249 arg1Of mice,form
R875 T1241 T1242 arg1Of deficient,for
R876 T1243 T1244 arg1Of CD40,or
R877 T1244 T1242 arg2Of or,for
R878 T1245 T1244 arg2Of CD40L,or
R879 T1246 T1238 arg2Of are,such
R880 T1246 T1239 arg1Of are,that
R881 T1247 T1246 arg2Of unable,are
R882 T1249 T1247 arg2Of form,unable
R883 T1249 T1248 arg1Of form,to
R884 T1249 T1251 arg1Of form,in
R885 T1250 T1249 arg2Of GCs,form
R886 T1252 T1251 arg2Of response,in
R887 T1252 T1253 arg1Of response,to
R888 T1256 T1253 arg2Of antigens,to
R889 T1256 T1254 arg1Of antigens,T
R890 T1256 T1255 arg1Of antigens,cell–dependent
R891 T1256 T1257 arg1Of antigens,[
R892 T1258 T1257 arg2Of "20,21",[
R893 T1259 T1257 arg3Of ],[
R894 T1263 T1264 arg1Of proximal,and
R895 T1265 T1264 arg2Of distal,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2118 0-1 , denotes ,
T2119 2-9 JJ denotes primary
T2120 10-11 NNP denotes B
T2121 12-17 NNS denotes cells
T2122 18-21 MD denotes can
T2123 22-24 VB denotes be
T2124 25-35 VBN denotes maintained
T2125 36-38 IN denotes by
T2126 39-43 NNP denotes CD40
T2127 44-52 NN denotes ligation
T2128 53-55 IN denotes in
T2129 56-67 NN denotes combination
T2130 68-72 IN denotes with
T2131 73-76 CD denotes IL4
T2132 77-86 NN denotes treatment
T2133 86-87 . denotes .
T2134 88-90 IN denotes In
T2135 91-95 NN denotes vivo
T2136 95-96 , denotes ,
T2137 97-101 NNP denotes CD40
T2138 102-111 VBG denotes signaling
T2139 112-114 VBZ denotes is
T2140 115-124 JJ denotes necessary
T2141 125-128 IN denotes for
T2142 129-137 JJ denotes germinal
T2143 138-144 NN denotes center
T2144 145-146 -LRB- denotes (
T2145 146-148 NNP denotes GC
T2146 148-149 -RRB- denotes )
T2147 150-159 NN denotes formation
T2148 160-164 JJ denotes such
T2149 165-169 IN denotes that
T2150 170-174 NNS denotes mice
T2151 175-184 NN denotes deficient
T2152 185-188 IN denotes for
T2153 189-193 NNP denotes CD40
T2154 194-196 CC denotes or
T2155 197-202 NNP denotes CD40L
T2156 203-206 VBP denotes are
T2157 207-213 JJ denotes unable
T2158 214-216 TO denotes to
T2159 217-221 VB denotes form
T2160 222-225 NNS denotes GCs
T2161 226-228 IN denotes in
T2162 229-237 NN denotes response
T2163 238-240 TO denotes to
T2164 241-242 NNP denotes T
T2165 243-247 NN denotes cell
T2166 248-257 JJ denotes dependent
T2167 258-266 NNS denotes antigens
T2168 267-268 NNP denotes [
T2169 268-273 CD denotes 20,21
T2170 273-274 NNP denotes ]
T2171 274-275 . denotes .
T2172 276-280 DT denotes Both
T2173 281-284 DT denotes the
T2174 285-293 NN denotes membrane
T2175 294-302 NN denotes proximal
T2176 303-306 CC denotes and
T2177 307-313 JJ denotes distal
T2178 314-325 JJ denotes cytoplasmic
R1647 T2118 T2124 punct ",",maintained
R1649 T2119 T2121 amod primary,cells
R1650 T2120 T2121 compound B,cells
R1651 T2121 T2124 nsubjpass cells,maintained
R1653 T2122 T2124 aux can,maintained
R1654 T2123 T2124 auxpass be,maintained
R1656 T2124 T2124 ROOT maintained,maintained
R1657 T2125 T2124 agent by,maintained
R1658 T2126 T2127 compound CD40,ligation
R1660 T2127 T2125 pobj ligation,by
R1661 T2128 T2127 prep in,ligation
R1662 T2129 T2128 pobj combination,in
R1664 T2130 T2124 prep with,maintained
R1665 T2131 T2132 nummod IL4,treatment
R1667 T2132 T2130 pobj treatment,with
R1668 T2133 T2124 punct .,maintained
R1669 T2134 T2139 prep In,is
R1670 T2135 T2134 pobj vivo,In
R1672 T2136 T2139 punct ",",is
R1673 T2137 T2138 nsubj CD40,signaling
R1675 T2138 T2139 nsubj signaling,is
R1676 T2139 T2139 ROOT is,is
R1677 T2140 T2139 acomp necessary,is
R1679 T2141 T2139 prep for,is
R1680 T2142 T2143 amod germinal,center
R1681 T2143 T2141 pobj center,for
R1682 T2144 T2145 punct (,GC
R1684 T2145 T2143 appos GC,center
R1685 T2146 T2145 punct ),GC
R1686 T2147 T2148 npadvmod formation,such
R1688 T2148 T2139 acomp such,is
R1689 T2149 T2156 mark that,are
R1690 T2150 T2151 nsubj mice,deficient
R1692 T2151 T2156 nsubj deficient,are
R1693 T2152 T2151 prep for,deficient
R1694 T2153 T2152 pobj CD40,for
R1695 T2154 T2153 cc or,CD40
R1696 T2155 T2153 conj CD40L,CD40
R1699 T2156 T2148 acl are,such
R1700 T2157 T2156 acomp unable,are
R1702 T2158 T2159 aux to,form
R1703 T2159 T2157 xcomp form,unable
R1704 T2160 T2159 dobj GCs,form
R1706 T2161 T2159 prep in,form
R1707 T2162 T2161 pobj response,in
R1709 T2163 T2162 prep to,response
R1710 T2164 T2165 compound T,cell
R1711 T2165 T2163 pobj cell,to
R1713 T2166 T2167 amod dependent,antigens
R1714 T2167 T2159 dobj antigens,form
R1716 T2168 T2170 compound [,]
R1717 T2169 T2170 compound "20,21",]
R1718 T2170 T2167 appos ],antigens
R1720 T2171 T2139 punct .,is
R1721 T2172 T2175 preconj Both,proximal
R1722 T2173 T2175 det the,proximal
R1725 T2174 T2175 compound membrane,proximal
R1728 T2176 T2175 cc and,proximal

UBERON-AE

Id Subject Object Predicate Lexical cue
T687 129-144 http://purl.obolibrary.org/obo/UBERON_0010754 denotes germinal center

GO-BP

Id Subject Object Predicate Lexical cue
T873 150-159 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T840 102-111 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T2677 243-247 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2685 285-293 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane

sentences

Id Subject Object Predicate Lexical cue
T791 88-275 Sentence denotes In vivo, CD40 signaling is necessary for germinal center (GC) formation such that mice deficient for CD40 or CD40L are unable to form GCs in response to T cell–dependent antigens [20,21].
T28 88-275 Sentence denotes In vivo, CD40 signaling is necessary for germinal center (GC) formation such that mice deficient for CD40 or CD40L are unable to form GCs in response to T cell–dependent antigens [20,21].

events-check-again

Id Subject Object Predicate Lexical cue
T2996 39-43 Protein denotes CD40
T2997 44-52 Binding denotes ligation
T2998 73-76 Protein denotes IL4
T2999 97-101 Protein denotes CD40
T3000 175-184 Negative_regulation denotes deficient
T3001 175-184 Negative_regulation denotes deficient
T3002 189-193 Protein denotes CD40
T3003 197-202 Protein denotes CD40L
T3004 285-302 Entity denotes membrane proximal
R2362 T2996 T2997 themeOf CD40,ligation
R2363 T3002 T3001 themeOf CD40,deficient
R2364 T3003 T3000 themeOf CD40L,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2906 39-43 Protein denotes CD40
T2907 73-76 Protein denotes IL4
T2908 44-52 Binding denotes ligation
T2909 97-101 Protein denotes CD40
T2910 189-193 Protein denotes CD40
T2911 197-202 Protein denotes CD40L
T2912 175-184 Negative_regulation denotes deficient
T2913 175-184 Negative_regulation denotes deficient
R2339 T2910 T2912 themeOf CD40,deficient
R2342 T2911 T2913 themeOf CD40L,deficient
R2335 T2906 T2908 themeOf CD40,ligation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T710 39-43 Protein denotes CD40
T711 44-52 Binding denotes ligation
T712 73-76 Protein denotes IL4
T713 97-101 Protein denotes CD40
T714 175-184 Negative_regulation denotes deficient
T715 175-184 Negative_regulation denotes deficient
T716 189-193 Protein denotes CD40
T717 197-202 Protein denotes CD40L
T718 285-302 Entity denotes membrane proximal
R471 T710 T711 themeOf CD40,ligation
R472 T716 T715 themeOf CD40,deficient
R473 T717 T714 themeOf CD40L,deficient

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1730 39-43 P25942 denotes CD40
T1731 73-76 P05112 denotes IL4
T1732 97-101 P25942 denotes CD40
T1733 189-193 P25942 denotes CD40
T1734 197-202 P29965 denotes CD40L

test2

Id Subject Object Predicate Lexical cue
T628 39-43 Protein denotes CD40
T629 44-52 Binding denotes ligation
T630 73-76 Protein denotes IL4
T631 97-101 Protein denotes CD40
T632 175-184 Negative_regulation denotes deficient
T633 189-193 Protein denotes CD40
T634 197-202 Protein denotes CD40L
R433 T628 T629 themeOf CD40,ligation
R434 T633 T632 themeOf CD40,deficient
R435 T634 T632 themeOf CD40L,deficient