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PMC:2065877 / 35070-35310 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17997602-7534202-98185747 236-238 7534202 denotes 20

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14760 0-5 IN denotes Since
T14761 6-20 JJ denotes CD40-deficient
T14762 21-25 NN denotes mice
T14763 26-30 VB denotes have
T14764 31-40 VB denotes decreased
T14765 41-48 NN denotes numbers
T14766 49-51 IN denotes of
T14767 52-65 NN denotes IgMhighIgDlow
T14768 66-71 NN denotes cells
T14769 71-72 -COMMA- denotes ,
T14770 73-74 DT denotes a
T14771 75-84 NN denotes phenotype
T14772 85-95 VB denotes associated
T14773 96-100 IN denotes with
T14774 101-104 NN denotes B-1
T14775 104-105 -COMMA- denotes ,
T14776 106-114 JJ denotes marginal
T14777 115-119 NN denotes zone
T14778 119-120 -COMMA- denotes ,
T14779 121-124 CC denotes and
T14780 125-131 NN denotes memory
T14781 132-133 NN denotes B
T14782 134-139 NN denotes cells
T14783 139-140 -COMMA- denotes ,
T14784 141-144 DT denotes the
T14785 145-152 NN denotes mimicry
T14786 153-155 IN denotes of
T14787 156-160 NN denotes CD40
T14788 161-170 NN denotes signaling
T14789 171-173 IN denotes by
T14790 174-178 NN denotes LMP1
T14791 179-184 MD denotes could
T14792 185-193 RB denotes possibly
T14793 194-204 VB denotes contribute
T14794 205-207 TO denotes to
T14795 208-211 DT denotes the
T14796 212-221 NN denotes expansion
T14797 222-224 IN denotes of
T14798 225-228 NN denotes B-1
T14799 229-234 NN denotes cells
T14800 235-236 -LRB- denotes [
T14801 236-238 CD denotes 20
T14802 238-239 -RRB- denotes ]
R11022 T14762 T14761 arg1Of mice,CD40-deficient
R11023 T14762 T14763 arg1Of mice,have
R11024 T14762 T14764 arg1Of mice,decreased
R11025 T14764 T14760 arg2Of decreased,Since
R11026 T14764 T14763 arg2Of decreased,have
R11027 T14765 T14764 arg2Of numbers,decreased
R11028 T14765 T14766 arg1Of numbers,of
R11029 T14768 T14766 arg2Of cells,of
R11030 T14768 T14767 arg1Of cells,IgMhighIgDlow
R11031 T14771 T14770 arg1Of phenotype,a
R11032 T14771 T14772 arg2Of phenotype,associated
R11033 T14771 T14793 arg2Of phenotype,contribute
R11034 T14772 T14773 arg1Of associated,with
R11035 T14774 T14775 arg1Of B-1,","
R11036 T14775 T14779 arg1Of ",",and
R11037 T14777 T14775 arg2Of zone,","
R11038 T14777 T14776 arg1Of zone,marginal
R11039 T14779 T14773 arg2Of and,with
R11040 T14779 T14778 arg1Of and,","
R11041 T14782 T14779 arg2Of cells,and
R11042 T14782 T14780 arg1Of cells,memory
R11043 T14782 T14781 arg1Of cells,B
R11044 T14785 T14784 arg1Of mimicry,the
R11045 T14785 T14786 arg1Of mimicry,of
R11046 T14785 T14789 arg1Of mimicry,by
R11047 T14785 T14791 arg1Of mimicry,could
R11048 T14785 T14793 arg1Of mimicry,contribute
R11049 T14788 T14786 arg2Of signaling,of
R11050 T14788 T14787 arg1Of signaling,CD40
R11051 T14790 T14789 arg2Of LMP1,by
R11052 T14793 T14760 arg1Of contribute,Since
R11053 T14793 T14769 arg1Of contribute,","
R11054 T14793 T14783 arg1Of contribute,","
R11055 T14793 T14791 arg2Of contribute,could
R11056 T14793 T14792 arg1Of contribute,possibly
R11057 T14793 T14794 arg1Of contribute,to
R11058 T14796 T14794 arg2Of expansion,to
R11059 T14796 T14795 arg1Of expansion,the
R11060 T14796 T14797 arg1Of expansion,of
R11061 T14796 T14800 arg1Of expansion,[
R11062 T14799 T14797 arg2Of cells,of
R11063 T14799 T14798 arg1Of cells,B-1
R11064 T14801 T14800 arg2Of 20,[
R11065 T14802 T14800 arg3Of ],[

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16260 0-5 IN denotes Since
T16261 6-20 JJ denotes CD40-deficient
T16262 21-25 NNS denotes mice
T16263 26-30 VBP denotes have
T16264 31-40 VBN denotes decreased
T16265 41-48 NNS denotes numbers
T16266 49-51 IN denotes of
T16267 52-65 NNP denotes IgMhighIgDlow
T16268 66-71 NNS denotes cells
T16269 71-72 , denotes ,
T16270 73-74 DT denotes a
T16271 75-84 NN denotes phenotype
T16272 85-95 VBN denotes associated
T16273 96-100 IN denotes with
T16274 101-104 JJ denotes B-1
T16275 104-105 , denotes ,
T16276 106-114 JJ denotes marginal
T16277 115-119 NN denotes zone
T16278 119-120 , denotes ,
T16279 121-124 CC denotes and
T16280 125-131 NN denotes memory
T16281 132-133 NNP denotes B
T16282 134-139 NNS denotes cells
T16283 139-140 , denotes ,
T16284 141-144 DT denotes the
T16285 145-152 NN denotes mimicry
T16286 153-155 IN denotes of
T16287 156-160 NNP denotes CD40
T16288 161-170 VBG denotes signaling
T16289 171-173 IN denotes by
T16290 174-178 NNP denotes LMP1
T16291 179-184 MD denotes could
T16292 185-193 RB denotes possibly
T16293 194-204 VB denotes contribute
T16294 205-207 TO denotes to
T16295 208-211 DT denotes the
T16296 212-221 NN denotes expansion
T16297 222-224 IN denotes of
T16298 225-228 JJ denotes B-1
T16299 229-234 NNS denotes cells
T16300 235-236 NNP denotes [
T16301 236-238 CD denotes 20
T16302 238-239 NNP denotes ]
T16303 239-240 . denotes .
R12444 T16260 T16264 prep Since,decreased
R12445 T16261 T16262 amod CD40-deficient,mice
R12446 T16262 T16264 nsubj mice,decreased
R12447 T16263 T16264 aux have,decreased
R12448 T16264 T16293 advcl decreased,contribute
R12449 T16265 T16264 dobj numbers,decreased
R12450 T16266 T16265 prep of,numbers
R12451 T16267 T16268 compound IgMhighIgDlow,cells
R12452 T16268 T16266 pobj cells,of
R12466 T16282 T16277 conj cells,zone
R12485 T16301 T16302 nummod 20,]
R12486 T16302 T16296 appos ],expansion
R12487 T16303 T16293 punct .,contribute
R12453 T16269 T16265 punct ",",numbers
R12454 T16270 T16271 det a,phenotype
R12455 T16271 T16265 conj phenotype,numbers
R12456 T16272 T16271 acl associated,phenotype
R12457 T16273 T16272 prep with,associated
R12458 T16274 T16277 amod B-1,zone
R12459 T16275 T16277 punct ",",zone
R12460 T16276 T16277 amod marginal,zone
R12461 T16277 T16273 pobj zone,with
R12462 T16278 T16277 punct ",",zone
R12463 T16279 T16277 cc and,zone
R12464 T16280 T16282 compound memory,cells
R12465 T16281 T16282 compound B,cells
R12467 T16283 T16271 punct ",",phenotype
R12468 T16284 T16285 det the,mimicry
R12469 T16285 T16293 nsubj mimicry,contribute
R12470 T16286 T16285 prep of,mimicry
R12471 T16287 T16286 pobj CD40,of
R12472 T16288 T16285 acl signaling,mimicry
R12473 T16289 T16288 prep by,signaling
R12474 T16290 T16289 pobj LMP1,by
R12475 T16291 T16293 aux could,contribute
R12476 T16292 T16293 advmod possibly,contribute
R12477 T16293 T16293 ROOT contribute,contribute
R12478 T16294 T16293 prep to,contribute
R12479 T16295 T16296 det the,expansion
R12480 T16296 T16294 pobj expansion,to
R12481 T16297 T16296 prep of,expansion
R12482 T16298 T16299 compound B-1,cells
R12483 T16299 T16297 pobj cells,of
R12484 T16300 T16302 nmod [,]

GO-BP

Id Subject Object Predicate Lexical cue
T14562 161-170 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T14575 125-131 http://purl.obolibrary.org/obo/GO_0007613 denotes memory

sentences

Id Subject Object Predicate Lexical cue
T14507 0-240 Sentence denotes Since CD40-deficient mice have decreased numbers of IgMhighIgDlow cells, a phenotype associated with B-1, marginal zone, and memory B cells, the mimicry of CD40 signaling by LMP1 could possibly contribute to the expansion of B-1 cells [20].
T239 0-240 Sentence denotes Since CD40-deficient mice have decreased numbers of IgMhighIgDlow cells, a phenotype associated with B-1, marginal zone, and memory B cells, the mimicry of CD40 signaling by LMP1 could possibly contribute to the expansion of B-1 cells [20].

events-check-again

Id Subject Object Predicate Lexical cue
T18131 6-10 Protein denotes CD40
T18132 11-20 Negative_regulation denotes deficient
T18133 156-160 Protein denotes CD40
T18134 174-178 Protein denotes LMP1
R13965 T18131 T18132 themeOf CD40,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T17961 6-10 Protein denotes CD40
T17962 156-160 Protein denotes CD40
T17963 174-178 Protein denotes LMP1
T17964 11-20 Negative_regulation denotes deficient
R13895 T17961 T17964 themeOf CD40,deficient

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T14354 6-10 Protein denotes CD40
T14355 11-20 Negative_regulation denotes deficient
T14356 156-160 Protein denotes CD40
T14357 174-178 Protein denotes LMP1
R10802 T14354 T14355 themeOf CD40,deficient

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16014 6-10 P25942 denotes CD40
T16015 156-160 P25942 denotes CD40
T16016 174-178 P03230 denotes LMP1

test2

Id Subject Object Predicate Lexical cue Speculation
T14203 6-10 Protein denotes CD40
T14204 11-20 Negative_regulation denotes deficient true
T14205 156-160 Protein denotes CD40
T14206 174-178 Protein denotes LMP1
R10748 T14203 T14204 themeOf CD40,deficient