PMC:2065877 / 3003-3265
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1094 | 9-13 | IN | denotes | with |
| T1095 | 14-18 | NN | denotes | CD40 |
| T1096 | 19-25 | NN | denotes | ligand |
| T1097 | 26-35 | VB | denotes | expressed |
| T1098 | 36-38 | IN | denotes | on |
| T1099 | 39-48 | VB | denotes | activated |
| T1100 | 49-50 | NN | denotes | T |
| T1101 | 51-56 | NN | denotes | cells |
| T1102 | 57-59 | TO | denotes | to |
| T1103 | 60-66 | VB | denotes | induce |
| T1104 | 67-68 | NN | denotes | B |
| T1105 | 69-73 | NN | denotes | cell |
| T1106 | 74-84 | NN | denotes | activation |
| T1107 | 85-88 | CC | denotes | and |
| T1108 | 89-104 | NN | denotes | differentiation |
| T1109 | 104-105 | -COMMA- | denotes | , |
| T1110 | 106-110 | NN | denotes | LMP1 |
| T1111 | 111-115 | VB | denotes | acts |
| T1112 | 116-118 | IN | denotes | as |
| T1113 | 119-120 | DT | denotes | a |
| T1114 | 121-133 | JJ | denotes | constitutive |
| T1115 | 134-140 | NN | denotes | signal |
| T1116 | 141-148 | IN | denotes | through |
| T1117 | 149-167 | JJ | denotes | ligand-independent |
| T1118 | 168-183 | NN | denotes | oligomerization |
| T1119 | 185-189 | NN | denotes | LMP1 |
| T1120 | 190-193 | CC | denotes | and |
| T1121 | 194-198 | NN | denotes | CD40 |
| T1122 | 199-207 | VB | denotes | interact |
| T1123 | 208-212 | IN | denotes | with |
| T1124 | 213-216 | DT | denotes | the |
| T1125 | 217-221 | JJ | denotes | same |
| T1126 | 222-227 | NN | denotes | tumor |
| T1127 | 228-236 | NN | denotes | necrosis |
| T1128 | 237-243 | NN | denotes | factor |
| R727 | T1096 | T1094 | arg2Of | ligand,with |
| R728 | T1096 | T1095 | arg1Of | ligand,CD40 |
| R729 | T1096 | T1097 | arg2Of | ligand,expressed |
| R730 | T1097 | T1098 | arg1Of | expressed,on |
| R731 | T1097 | T1102 | modOf | expressed,to |
| R732 | T1101 | T1098 | arg2Of | cells,on |
| R733 | T1101 | T1099 | arg2Of | cells,activated |
| R734 | T1101 | T1100 | arg1Of | cells,T |
| R735 | T1103 | T1102 | arg1Of | induce,to |
| R736 | T1106 | T1107 | arg1Of | activation,and |
| R737 | T1107 | T1103 | arg2Of | and,induce |
| R738 | T1107 | T1104 | arg1Of | and,B |
| R739 | T1107 | T1105 | arg1Of | and,cell |
| R740 | T1108 | T1107 | arg2Of | differentiation,and |
| R741 | T1110 | T1111 | arg1Of | LMP1,acts |
| R743 | T1111 | T1109 | arg1Of | acts,"," |
| R744 | T1111 | T1112 | arg1Of | acts,as |
| R745 | T1111 | T1116 | arg1Of | acts,through |
| R746 | T1115 | T1112 | arg2Of | signal,as |
| R747 | T1115 | T1113 | arg1Of | signal,a |
| R748 | T1115 | T1114 | arg1Of | signal,constitutive |
| R749 | T1118 | T1116 | arg2Of | oligomerization,through |
| R750 | T1118 | T1117 | arg1Of | oligomerization,ligand-independent |
| R751 | T1119 | T1120 | arg1Of | LMP1,and |
| R752 | T1120 | T1122 | arg1Of | and,interact |
| R753 | T1121 | T1120 | arg2Of | CD40,and |
| R754 | T1122 | T1123 | arg1Of | interact,with |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1996 | 9-13 | IN | denotes | with |
| T1997 | 14-18 | JJ | denotes | CD40 |
| T1998 | 19-25 | NN | denotes | ligand |
| T1999 | 26-35 | VBN | denotes | expressed |
| T2000 | 36-38 | IN | denotes | on |
| T2001 | 39-48 | VBN | denotes | activated |
| T2002 | 49-50 | NNP | denotes | T |
| T2003 | 51-56 | NNS | denotes | cells |
| T2004 | 57-59 | TO | denotes | to |
| T2005 | 60-66 | VB | denotes | induce |
| T2006 | 67-68 | NNP | denotes | B |
| T2007 | 69-73 | NN | denotes | cell |
| T2008 | 74-84 | NN | denotes | activation |
| T2009 | 85-88 | CC | denotes | and |
| T2010 | 89-104 | NN | denotes | differentiation |
| T2011 | 104-105 | , | denotes | , |
| T2012 | 106-110 | NNP | denotes | LMP1 |
| T2013 | 111-115 | VBZ | denotes | acts |
| T2014 | 116-118 | IN | denotes | as |
| T2015 | 119-120 | DT | denotes | a |
| T2016 | 121-133 | JJ | denotes | constitutive |
| T2017 | 134-140 | NN | denotes | signal |
| T2018 | 141-148 | IN | denotes | through |
| T2019 | 149-167 | JJ | denotes | ligand-independent |
| T2020 | 168-183 | NN | denotes | oligomerization |
| T2021 | 183-184 | . | denotes | . |
| T2022 | 185-189 | CD | denotes | LMP1 |
| T2023 | 190-193 | CC | denotes | and |
| T2024 | 194-198 | CD | denotes | CD40 |
| T2025 | 199-207 | NN | denotes | interact |
| T2026 | 208-212 | IN | denotes | with |
| T2027 | 213-216 | DT | denotes | the |
| T2028 | 217-221 | JJ | denotes | same |
| T2029 | 222-227 | NN | denotes | tumor |
| T2030 | 228-236 | NN | denotes | necrosis |
| T2031 | 237-243 | NN | denotes | factor |
| T2032 | 244-252 | NN | denotes | receptor |
| R1499 | T1997 | T1998 | amod | CD40,ligand |
| R1506 | T1998 | T1996 | pobj | ligand,with |
| R1510 | T1999 | T2013 | advcl | expressed,acts |
| R1514 | T2000 | T1999 | prep | on,expressed |
| R1518 | T2001 | T2003 | amod | activated,cells |
| R1523 | T2002 | T2003 | compound | T,cells |
| R1527 | T2003 | T2000 | pobj | cells,on |
| R1531 | T2004 | T2005 | aux | to,induce |
| R1535 | T2005 | T1999 | xcomp | induce,expressed |
| R1539 | T2006 | T2008 | compound | B,activation |
| R1541 | T2007 | T2008 | compound | cell,activation |
| R1543 | T2008 | T2005 | dobj | activation,induce |
| R1547 | T2009 | T2008 | cc | and,activation |
| R1551 | T2010 | T2008 | conj | differentiation,activation |
| R1554 | T2011 | T2013 | punct | ",",acts |
| R1558 | T2012 | T2013 | nsubj | LMP1,acts |
| R1562 | T2013 | T2013 | ROOT | acts,acts |
| R1564 | T2014 | T2013 | prep | as,acts |
| R1566 | T2015 | T2017 | det | a,signal |
| R1569 | T2016 | T2017 | amod | constitutive,signal |
| R1572 | T2017 | T2014 | pobj | signal,as |
| R1576 | T2018 | T2017 | prep | through,signal |
| R1580 | T2019 | T2020 | amod | ligand-independent,oligomerization |
| R1585 | T2020 | T2018 | pobj | oligomerization,through |
| R1589 | T2021 | T2013 | punct | .,acts |
| R1593 | T2022 | T2025 | nummod | LMP1,interact |
| R1601 | T2023 | T2022 | cc | and,LMP1 |
| R1605 | T2024 | T2022 | conj | CD40,LMP1 |
| R1608 | T2025 | T2025 | ROOT | interact,interact |
| R1609 | T2026 | T2025 | prep | with,interact |
| R1610 | T2027 | T2031 | det | the,factor |
| R1611 | T2028 | T2031 | amod | same,factor |
| R1612 | T2029 | T2030 | compound | tumor,necrosis |
| R1616 | T2030 | T2031 | compound | necrosis,factor |
| R1620 | T2031 | T2026 | pobj | factor,with |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T853 | 69-104 | http://purl.obolibrary.org/obo/GO_0045600 | denotes | cell activation and differentiation |
| T854 | 228-236 | http://purl.obolibrary.org/obo/GO_0001906 | denotes | necrosis |
| T855 | 228-236 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | necrosis |
| T857 | 228-236 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | necrosis |
| T858 | 228-236 | http://purl.obolibrary.org/obo/GO_0070265 | denotes | necrosis |
| T843 | 69-84 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T844 | 69-104 | http://purl.obolibrary.org/obo/GO_0014040 | denotes | cell activation and differentiation |
| T845 | 69-104 | http://purl.obolibrary.org/obo/GO_0031287 | denotes | cell activation and differentiation |
| T846 | 69-104 | http://purl.obolibrary.org/obo/GO_0045594 | denotes | cell activation and differentiation |
| T847 | 69-104 | http://purl.obolibrary.org/obo/GO_0045606 | denotes | cell activation and differentiation |
| T848 | 69-104 | http://purl.obolibrary.org/obo/GO_0045690 | denotes | cell activation and differentiation |
| T849 | 69-104 | http://purl.obolibrary.org/obo/GO_1902107 | denotes | cell activation and differentiation |
| T850 | 69-104 | http://purl.obolibrary.org/obo/GO_1902913 | denotes | cell activation and differentiation |
| T851 | 69-104 | http://purl.obolibrary.org/obo/GO_0046534 | denotes | cell activation and differentiation |
| T852 | 69-104 | http://purl.obolibrary.org/obo/GO_0045597 | denotes | cell activation and differentiation |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2659 | 19-25 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | ligand |
| T2660 | 149-155 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | ligand |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2674 | 69-73 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2983 | 14-25 | Protein | denotes | CD40 ligand |
| T2984 | 26-35 | Gene_expression | denotes | expressed |
| T2985 | 106-110 | Protein | denotes | LMP1 |
| T2986 | 168-183 | Binding | denotes | oligomerization |
| T2987 | 185-189 | Protein | denotes | LMP1 |
| T2988 | 194-198 | Protein | denotes | CD40 |
| T2989 | 199-207 | Binding | denotes | interact |
| T2990 | 199-207 | Binding | denotes | interact |
| T2991 | 222-243 | Protein | denotes | tumor necrosis factor |
| R2358 | T2983 | T2984 | themeOf | CD40 ligand,expressed |
| R2359 | T2985 | T2986 | themeOf | LMP1,oligomerization |
| R2360 | T2987 | T2990 | themeOf | LMP1,interact |
| R2361 | T2988 | T2989 | themeOf | CD40,interact |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2881 | 14-25 | Protein | denotes | CD40 ligand |
| T2882 | 106-110 | Protein | denotes | LMP1 |
| T2884 | 26-35 | Gene_expression | denotes | expressed |
| T2885 | 168-183 | Binding | denotes | oligomerization |
| T2886 | 185-189 | Protein | denotes | LMP1 |
| T2887 | 194-207 | Protein | denotes | CD40 interact |
| R2313 | T2881 | T2884 | themeOf | CD40 ligand,expressed |
| R2314 | T2882 | T2885 | themeOf | LMP1,oligomerization |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T697 | 14-25 | Protein | denotes | CD40 ligand |
| T698 | 26-35 | Gene_expression | denotes | expressed |
| T699 | 106-110 | Protein | denotes | LMP1 |
| T700 | 168-183 | Binding | denotes | oligomerization |
| T701 | 185-189 | Protein | denotes | LMP1 |
| T702 | 194-198 | Protein | denotes | CD40 |
| T703 | 199-207 | Binding | denotes | interact |
| T704 | 199-207 | Binding | denotes | interact |
| T705 | 222-243 | Protein | denotes | tumor necrosis factor |
| R468 | T699 | T700 | themeOf | LMP1,oligomerization |
| R469 | T701 | T704 | themeOf | LMP1,interact |
| R470 | T702 | T703 | themeOf | CD40,interact |
| R467 | T697 | T698 | themeOf | CD40 ligand,expressed |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1713 | 14-18 | P25942 | denotes | CD40 |
| T1714 | 14-25 | P29965 | denotes | CD40 ligand |
| T1715 | 106-110 | P03230 | denotes | LMP1 |
| T1716 | 185-189 | P03230 | denotes | LMP1 |
| T1717 | 194-198 | P25942 | denotes | CD40 |
| T1718 | 222-243 | P01375 | denotes | tumor necrosis factor |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T617 | 14-25 | Protein | denotes | CD40 ligand |
| T618 | 26-35 | Gene_expression | denotes | expressed |
| T619 | 106-110 | Protein | denotes | LMP1 |
| T620 | 185-189 | Protein | denotes | LMP1 |
| T621 | 194-198 | Protein | denotes | CD40 |
| T622 | 199-207 | Binding | denotes | interact |
| T623 | 222-243 | Protein | denotes | tumor necrosis factor |
| R429 | T617 | T618 | themeOf | CD40 ligand,expressed |
| R430 | T620 | T622 | themeOf | LMP1,interact |
| R431 | T621 | T622 | themeOf | CD40,interact |
| R432 | T623 | T622 | themeOf | tumor necrosis factor,interact |