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PMC:1942070 / 9981-10173 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5201 0-2 PRP denotes We
T5202 3-6 VB denotes did
T5203 7-14 VB denotes observe
T5204 15-19 IN denotes that
T5205 20-23 DT denotes the
T5206 24-32 NN denotes strength
T5207 33-35 IN denotes of
T5208 36-39 NN denotes BCR
T5209 40-41 -LRB- denotes (
T5210 41-44 CC denotes but
T5211 45-48 RB denotes not
T5212 49-56 NN denotes phorbol
T5213 57-62 NN denotes ester
T5214 62-63 -RRB- denotes )
T5215 63-71 JJ denotes -induced
T5216 72-82 NN denotes regulation
T5217 83-85 IN denotes of
T5218 86-89 DT denotes the
T5219 90-99 NN denotes Erk1-RSK1
T5220 100-110 NN denotes signalling
T5221 111-118 NN denotes pathway
T5222 119-122 VB denotes was
T5223 123-130 VB denotes reduced
T5224 131-133 IN denotes in
T5225 134-143 NN denotes PKD1/3−/−
T5226 144-145 NN denotes B
T5227 146-151 NN denotes cells
T5228 152-160 VB denotes compared
T5229 161-163 TO denotes to
T5230 164-173 JJ denotes wild-type
T5231 174-175 NN denotes B
T5232 176-181 NN denotes cells
T5233 182-183 -LRB- denotes (
T5234 183-187 NN denotes Fig.
T5235 188-190 NN denotes 3B
T5236 190-191 -RRB- denotes )
R4102 T5201 T5202 arg1Of We,did
R4103 T5201 T5203 arg1Of We,observe
R4104 T5203 T5202 arg2Of observe,did
R4105 T5206 T5205 arg1Of strength,the
R4106 T5206 T5207 arg1Of strength,of
R4107 T5206 T5222 arg1Of strength,was
R4108 T5206 T5223 arg2Of strength,reduced
R4109 T5208 T5209 arg1Of BCR,(
R4110 T5210 T5211 arg1Of but,not
R4111 T5213 T5209 arg2Of ester,(
R4112 T5213 T5210 arg1Of ester,but
R4113 T5213 T5212 arg1Of ester,phorbol
R4114 T5214 T5209 arg3Of ),(
R4115 T5216 T5207 arg2Of regulation,of
R4116 T5216 T5208 arg1Of regulation,BCR
R4117 T5216 T5215 arg1Of regulation,-induced
R4118 T5216 T5217 arg1Of regulation,of
R4119 T5221 T5217 arg2Of pathway,of
R4120 T5221 T5218 arg1Of pathway,the
R4121 T5221 T5219 arg1Of pathway,Erk1-RSK1
R4122 T5221 T5220 arg1Of pathway,signalling
R4123 T5223 T5203 arg2Of reduced,observe
R4124 T5223 T5204 arg1Of reduced,that
R4125 T5223 T5222 arg2Of reduced,was
R4126 T5223 T5224 arg1Of reduced,in
R4127 T5223 T5228 arg1Of reduced,compared
R4128 T5227 T5224 arg2Of cells,in
R4129 T5227 T5225 arg1Of cells,PKD1/3−/−
R4130 T5227 T5226 arg1Of cells,B
R4131 T5229 T5228 arg2Of to,compared
R4132 T5232 T5229 arg2Of cells,to
R4133 T5232 T5230 arg1Of cells,wild-type
R4134 T5232 T5231 arg1Of cells,B
R4135 T5232 T5233 arg1Of cells,(
R4136 T5235 T5233 arg2Of 3B,(
R4137 T5235 T5234 arg1Of 3B,Fig.
R4138 T5236 T5233 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5955 0-2 PRP denotes We
T5956 3-6 VBD denotes did
T5957 7-14 VB denotes observe
T5958 15-19 IN denotes that
T5959 20-23 DT denotes the
T5960 24-32 NN denotes strength
T5961 33-35 IN denotes of
T5962 36-39 NNP denotes BCR
T5963 40-41 -LRB- denotes (
T5964 41-44 CC denotes but
T5965 45-48 RB denotes not
T5966 49-56 VB denotes phorbol
T5967 57-62 NN denotes ester
T5968 62-63 -RRB- denotes )
T5969 63-64 : denotes -
T5970 64-71 VBD denotes induced
T5971 72-82 NN denotes regulation
T5972 83-85 IN denotes of
T5973 86-89 DT denotes the
T5974 90-99 JJ denotes Erk1-RSK1
T5975 100-110 NN denotes signalling
T5976 111-118 NN denotes pathway
T5977 119-122 VBD denotes was
T5978 123-130 VBN denotes reduced
T5979 131-133 IN denotes in
T5980 134-140 CD denotes PKD1/3
T5981 140-141 CD denotes −
T5982 141-142 NN denotes /
T5983 142-143 NN denotes −
T5984 144-145 NNP denotes B
T5985 146-151 NNS denotes cells
T5986 152-160 VBN denotes compared
T5987 161-163 TO denotes to
T5988 164-173 JJ denotes wild-type
T5989 174-175 NNP denotes B
T5990 176-181 NNS denotes cells
T5991 182-183 -LRB- denotes (
T5992 183-187 NNP denotes Fig.
T5993 188-190 NNP denotes 3B
T5994 190-191 -RRB- denotes )
T5995 191-192 . denotes .
R4808 T5955 T5957 nsubj We,observe
R4809 T5956 T5957 aux did,observe
R4810 T5957 T5957 ROOT observe,observe
R4811 T5958 T5970 mark that,induced
R4812 T5959 T5960 det the,strength
R4813 T5960 T5970 nsubj strength,induced
R4814 T5961 T5960 prep of,strength
R4815 T5962 T5961 pobj BCR,of
R4816 T5963 T5960 punct (,strength
R4817 T5964 T5960 cc but,strength
R4818 T5965 T5966 neg not,phorbol
R4819 T5966 T5967 advmod phorbol,ester
R4820 T5967 T5960 conj ester,strength
R4821 T5968 T5960 punct ),strength
R4822 T5969 T5970 punct -,induced
R4823 T5970 T5957 ccomp induced,observe
R4824 T5971 T5970 dobj regulation,induced
R4825 T5972 T5971 prep of,regulation
R4826 T5973 T5976 det the,pathway
R4827 T5974 T5976 amod Erk1-RSK1,pathway
R4828 T5975 T5976 compound signalling,pathway
R4829 T5976 T5972 pobj pathway,of
R4830 T5977 T5978 auxpass was,reduced
R4831 T5978 T5970 conj reduced,induced
R4832 T5979 T5978 prep in,reduced
R4833 T5980 T5985 nummod PKD1/3,cells
R4834 T5981 T5985 nummod −,cells
R4835 T5982 T5985 compound /,cells
R4836 T5983 T5985 compound −,cells
R4837 T5984 T5985 compound B,cells
R4838 T5985 T5979 pobj cells,in
R4839 T5986 T5978 prep compared,reduced
R4840 T5987 T5986 prep to,compared
R4841 T5988 T5990 amod wild-type,cells
R4842 T5989 T5990 compound B,cells
R4843 T5990 T5987 pobj cells,to
R4844 T5991 T5993 punct (,3B
R4845 T5992 T5993 compound Fig.,3B
R4846 T5993 T5990 appos 3B,cells
R4847 T5994 T5990 punct ),cells
R4848 T5995 T5957 punct .,observe

GO-BP

Id Subject Object Predicate Lexical cue
T6520 100-110 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T6540 72-82 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-CC

Id Subject Object Predicate Lexical cue
T6563 146-151 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6564 176-181 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5013 0-192 Sentence denotes We did observe that the strength of BCR (but not phorbol ester)-induced regulation of the Erk1-RSK1 signalling pathway was reduced in PKD1/3−/− B cells compared to wild-type B cells (Fig. 3B).
T68 0-192 Sentence denotes We did observe that the strength of BCR (but not phorbol ester)-induced regulation of the Erk1-RSK1 signalling pathway was reduced in PKD1/3−/− B cells compared to wild-type B cells (Fig. 3B).

events-check-again

Id Subject Object Predicate Lexical cue
T6934 90-94 Protein denotes Erk1
T6935 95-99 Protein denotes RSK1
T6936 134-138 Protein denotes PKD1
T6937 139-140 Protein denotes 3

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4971 90-94 Protein denotes Erk1
T4972 95-99 Protein denotes RSK1
T4973 134-138 Protein denotes PKD1
T4974 139-140 Protein denotes 3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5720 36-39 P11274 denotes BCR
T5721 90-94 P27361 denotes Erk1
T5722 134-138 P98161 denotes PKD1

test2

Id Subject Object Predicate Lexical cue
T4903 72-82 Regulation denotes regulation
T4904 90-94 Protein denotes Erk1
T4905 95-99 Protein denotes RSK1
T4906 123-130 Negative_regulation denotes reduced
T4907 134-138 Protein denotes PKD1
T4908 139-140 Protein denotes 3