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PMC:1942070 / 629-826 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T136 2-4 CD denotes 26
T137 4-5 -COMMA- denotes ,
T138 6-15 CD denotes 1569–1577
T139 15-16 -RRB- denotes ]
T140 18-20 PRP denotes We
T141 21-24 RB denotes now
T142 25-29 VB denotes show
T143 30-34 IN denotes that
T144 35-39 NN denotes PKDs
T145 40-43 VB denotes are
T146 44-48 RB denotes also
T147 49-57 VB denotes required
T148 58-60 TO denotes to
T149 61-69 VB denotes regulate
T150 70-75 NN denotes HSP27
T151 76-91 NN denotes phosphorylation
T152 92-94 IN denotes in
T153 95-99 NN denotes DT40
T154 100-107 NN denotes B-cells
T155 109-116 RB denotes However
T156 116-117 -COMMA- denotes ,
T157 118-120 IN denotes in
T158 121-129 NN denotes contrast
T159 130-132 TO denotes to
T160 133-141 JJ denotes previous
T161 142-154 NN denotes observations
T162 155-157 IN denotes in
T163 158-163 JJ denotes other
T164 164-168 NN denotes cell
T165 169-174 NN denotes types
T166 174-175 -COMMA- denotes ,
T167 176-179 NN denotes PKD
T168 180-187 NN denotes enzymes
T169 188-190 VB denotes do
T170 191-194 RB denotes not
R109 T138 T137 arg2Of 1569–1577,","
R110 T138 T139 arg1Of 1569–1577,]
R111 T140 T142 arg1Of We,show
R112 T142 T141 arg1Of show,now
R113 T144 T145 arg1Of PKDs,are
R114 T144 T147 arg2Of PKDs,required
R115 T144 T149 arg1Of PKDs,regulate
R116 T147 T142 arg2Of required,show
R117 T147 T143 arg1Of required,that
R118 T147 T145 arg2Of required,are
R119 T147 T146 arg1Of required,also
R120 T149 T147 arg3Of regulate,required
R121 T149 T148 arg1Of regulate,to
R122 T149 T152 arg1Of regulate,in
R123 T151 T149 arg2Of phosphorylation,regulate
R124 T151 T150 arg1Of phosphorylation,HSP27
R125 T154 T152 arg2Of B-cells,in
R126 T154 T153 arg1Of B-cells,DT40
R127 T158 T157 arg2Of contrast,in
R128 T158 T159 arg1Of contrast,to
R129 T161 T159 arg2Of observations,to
R130 T161 T160 arg1Of observations,previous
R131 T161 T162 arg1Of observations,in
R132 T165 T162 arg2Of types,in
R133 T165 T163 arg1Of types,other
R134 T165 T164 arg1Of types,cell
R135 T168 T167 arg1Of enzymes,PKD
R136 T168 T169 arg1Of enzymes,do

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T325 0-1 . denotes .
T326 2-4 CD denotes 26
T327 4-5 , denotes ,
T328 6-10 CD denotes 1569
T329 11-15 CD denotes 1577
T330 15-16 NNP denotes ]
T331 16-17 . denotes .
T332 18-20 PRP denotes We
T333 21-24 RB denotes now
T334 25-29 VBP denotes show
T335 30-34 IN denotes that
T336 35-39 NNS denotes PKDs
T337 40-43 VBP denotes are
T338 44-48 RB denotes also
T339 49-57 VBN denotes required
T340 58-60 TO denotes to
T341 61-69 VB denotes regulate
T342 70-75 NNP denotes HSP27
T343 76-91 NN denotes phosphorylation
T344 92-94 IN denotes in
T345 95-99 NNP denotes DT40
T346 100-107 NNPS denotes B-cells
T347 107-108 . denotes .
T348 109-116 RB denotes However
T349 116-117 , denotes ,
T350 118-120 IN denotes in
T351 121-129 NN denotes contrast
T352 130-132 TO denotes to
T353 133-141 JJ denotes previous
T354 142-154 NNS denotes observations
T355 155-157 IN denotes in
T356 158-163 JJ denotes other
T357 164-168 NN denotes cell
T358 169-174 NNS denotes types
T359 174-175 , denotes ,
T360 176-179 NNP denotes PKD
T361 180-187 VBZ denotes enzymes
T362 188-190 VB denotes do
T363 191-194 RB denotes not
R288 T325 T326 punct .,26
R293 T330 T330 ROOT ],]
R295 T332 T334 nsubj We,show
R296 T333 T334 advmod now,show
R297 T334 T334 ROOT show,show
R298 T335 T339 mark that,required
R299 T336 T339 nsubjpass PKDs,required
R300 T337 T339 auxpass are,required
R301 T338 T339 advmod also,required
R302 T339 T334 ccomp required,show
R303 T340 T341 aux to,regulate
R304 T341 T339 xcomp regulate,required
R305 T342 T343 compound HSP27,phosphorylation
R306 T343 T341 dobj phosphorylation,regulate
R307 T344 T343 prep in,phosphorylation
R308 T345 T346 compound DT40,B-cells
R309 T346 T344 pobj B-cells,in
R310 T347 T334 punct .,show
R314 T351 T350 pobj contrast,in
R315 T352 T351 prep to,contrast
R316 T353 T354 amod previous,observations
R317 T354 T352 pobj observations,to
R318 T355 T354 prep in,observations
R319 T356 T358 amod other,types
R320 T357 T358 compound cell,types
R321 T358 T355 pobj types,in

GO-BP

Id Subject Object Predicate Lexical cue
T22 76-91 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T401 102-107 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T402 164-168 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T18 18-108 Sentence denotes We now show that PKDs are also required to regulate HSP27 phosphorylation in DT40 B-cells.
T7 2-17 Sentence denotes 26, 1569–1577].
T8 18-108 Sentence denotes We now show that PKDs are also required to regulate HSP27 phosphorylation in DT40 B-cells.

events-check-again

Id Subject Object Predicate Lexical cue
T425 49-57 Positive_regulation denotes required
T426 61-69 Regulation denotes regulate
T427 70-75 Protein denotes HSP27
T428 76-91 Phosphorylation denotes phosphorylation
R410 T426 T425 themeOf regulate,required
R411 T427 T428 themeOf HSP27,phosphorylation
R412 T428 T426 themeOf phosphorylation,regulate

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T440 35-39 Protein denotes PKDs
T441 70-75 Protein denotes HSP27
T442 76-91 Phosphorylation denotes phosphorylation
T443 61-69 Regulation denotes regulate
T444 49-57 Positive_regulation denotes required
T445 176-187 Protein denotes PKD enzymes
R364 T440 T443 causeOf PKDs,regulate
R365 T440 T444 causeOf PKDs,required
R366 T441 T442 themeOf HSP27,phosphorylation
R367 T442 T443 themeOf phosphorylation,regulate
R368 T443 T444 themeOf regulate,required

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T10 49-57 Positive_regulation denotes required
T11 61-69 Regulation denotes regulate
T12 70-75 Protein denotes HSP27
T13 76-91 Phosphorylation denotes phosphorylation
R371 T11 T10 themeOf regulate,required
R372 T12 T13 themeOf HSP27,phosphorylation
R373 T13 T11 themeOf phosphorylation,regulate

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T204 70-75 P04792 denotes HSP27

test2

Id Subject Object Predicate Lexical cue
T5 49-57 Positive_regulation denotes required
T6 61-69 Regulation denotes regulate
T7 70-75 Protein denotes HSP27
T8 76-91 Phosphorylation denotes phosphorylation
R4 T6 T5 themeOf regulate,required
R5 T7 T8 themeOf HSP27,phosphorylation
R6 T8 T6 themeOf phosphorylation,regulate