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PMC:1942070 / 5284-5521 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17349631-16449666-30580536 234-235 16449666 denotes 1

MyTest

Id Subject Object Predicate Lexical cue
17349631-16449666-30580536 234-235 16449666 denotes 1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2416 0-10 RB denotes Previously
T2417 10-11 -COMMA- denotes ,
T2418 12-14 PRP denotes we
T2419 15-19 VB denotes have
T2420 20-32 VB denotes demonstrated
T2421 33-37 IN denotes that
T2422 38-53 NN denotes phosphorylation
T2423 54-57 CC denotes and
T2424 58-65 JJ denotes nuclear
T2425 66-75 NN denotes exclusion
T2426 76-78 IN denotes of
T2427 79-84 NN denotes class
T2428 85-87 CD denotes II
T2429 88-95 NN denotes histone
T2430 96-108 NN denotes deacetylases
T2431 109-110 -LRB- denotes (
T2432 110-115 NN denotes HDACs
T2433 115-116 -RRB- denotes )
T2434 117-123 IN denotes during
T2435 124-127 NN denotes BCR
T2436 128-138 NN denotes engagement
T2437 139-141 VB denotes is
T2438 142-151 JJ denotes defective
T2439 152-154 IN denotes in
T2440 155-164 NN denotes PKD1/3−/−
T2441 165-166 NN denotes B
T2442 167-172 NN denotes cells
T2443 173-176 CC denotes and
T2444 177-180 MD denotes can
T2445 181-189 VB denotes restored
T2446 190-194 IN denotes upon
T2447 195-208 NN denotes re-expression
T2448 209-211 IN denotes of
T2449 212-213 DT denotes a
T2450 214-220 JJ denotes single
T2451 221-224 NN denotes PKD
T2452 225-232 NN denotes isoform
T2453 233-234 -LRB- denotes [
T2454 234-235 CD denotes 1
T2455 235-236 -RRB- denotes ]
R2013 T2418 T2419 arg1Of we,have
R2014 T2418 T2420 arg1Of we,demonstrated
R2015 T2420 T2416 arg1Of demonstrated,Previously
R2016 T2420 T2417 arg1Of demonstrated,","
R2017 T2420 T2419 arg2Of demonstrated,have
R2018 T2422 T2423 arg1Of phosphorylation,and
R2019 T2423 T2426 arg1Of and,of
R2020 T2423 T2437 arg1Of and,is
R2021 T2423 T2438 arg1Of and,defective
R2022 T2423 T2444 arg1Of and,can
R2023 T2423 T2445 arg1Of and,restored
R2024 T2425 T2423 arg2Of exclusion,and
R2025 T2425 T2424 arg1Of exclusion,nuclear
R2026 T2430 T2426 arg2Of deacetylases,of
R2027 T2430 T2427 arg1Of deacetylases,class
R2028 T2430 T2428 arg1Of deacetylases,II
R2029 T2430 T2429 arg1Of deacetylases,histone
R2030 T2430 T2431 arg1Of deacetylases,(
R2031 T2430 T2434 arg1Of deacetylases,during
R2032 T2432 T2431 arg2Of HDACs,(
R2033 T2433 T2431 arg3Of ),(
R2034 T2436 T2434 arg2Of engagement,during
R2035 T2436 T2435 arg1Of engagement,BCR
R2036 T2437 T2443 arg1Of is,and
R2037 T2438 T2437 arg2Of defective,is
R2038 T2438 T2439 arg1Of defective,in
R2039 T2442 T2439 arg2Of cells,in
R2040 T2442 T2440 arg1Of cells,PKD1/3−/−
R2041 T2442 T2441 arg1Of cells,B
R2042 T2443 T2420 arg2Of and,demonstrated
R2043 T2443 T2421 arg1Of and,that
R2044 T2445 T2443 arg2Of restored,and
R2045 T2445 T2444 arg2Of restored,can
R2046 T2445 T2446 arg1Of restored,upon
R2047 T2447 T2446 arg2Of re-expression,upon
R2048 T2447 T2448 arg1Of re-expression,of
R2049 T2452 T2448 arg2Of isoform,of
R2050 T2452 T2449 arg1Of isoform,a
R2051 T2452 T2450 arg1Of isoform,single
R2052 T2452 T2451 arg1Of isoform,PKD
R2053 T2452 T2453 arg1Of isoform,[
R2054 T2454 T2453 arg2Of 1,[
R2055 T2455 T2453 arg3Of ],[

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2865 0-10 RB denotes Previously
T2866 10-11 , denotes ,
T2867 12-14 PRP denotes we
T2868 15-19 VBP denotes have
T2869 20-32 VBN denotes demonstrated
T2870 33-37 IN denotes that
T2871 38-53 NN denotes phosphorylation
T2872 54-57 CC denotes and
T2873 58-65 JJ denotes nuclear
T2874 66-75 NN denotes exclusion
T2875 76-78 IN denotes of
T2876 79-84 NN denotes class
T2877 85-87 NNP denotes II
T2878 88-95 NN denotes histone
T2879 96-108 NNS denotes deacetylases
T2880 109-110 -LRB- denotes (
T2881 110-115 NNS denotes HDACs
T2882 115-116 -RRB- denotes )
T2883 117-123 IN denotes during
T2884 124-127 NNP denotes BCR
T2885 128-138 NN denotes engagement
T2886 139-141 VBZ denotes is
T2887 142-151 JJ denotes defective
T2888 152-154 IN denotes in
T2889 155-161 CD denotes PKD1/3
T2890 161-162 CD denotes −
T2891 162-163 NN denotes /
T2892 163-164 NN denotes −
T2893 165-166 NNP denotes B
T2894 167-172 NNS denotes cells
T2895 173-176 CC denotes and
T2896 177-180 MD denotes can
T2897 181-189 VBD denotes restored
T2898 190-194 IN denotes upon
T2899 195-208 NN denotes re-expression
T2900 209-211 IN denotes of
T2901 212-213 DT denotes a
T2902 214-220 JJ denotes single
T2903 221-224 NNP denotes PKD
T2904 225-232 NN denotes isoform
T2905 233-234 NNP denotes [
T2906 234-235 CD denotes 1
T2907 235-236 NNP denotes ]
T2908 236-237 . denotes .
R2414 T2865 T2869 advmod Previously,demonstrated
R2415 T2866 T2869 punct ",",demonstrated
R2416 T2867 T2869 nsubj we,demonstrated
R2417 T2868 T2869 aux have,demonstrated
R2418 T2869 T2869 ROOT demonstrated,demonstrated
R2419 T2870 T2886 mark that,is
R2420 T2871 T2886 nsubj phosphorylation,is
R2421 T2872 T2871 cc and,phosphorylation
R2422 T2873 T2874 amod nuclear,exclusion
R2423 T2874 T2871 conj exclusion,phosphorylation
R2424 T2875 T2874 prep of,exclusion
R2425 T2876 T2879 nmod class,deacetylases
R2426 T2877 T2879 nmod II,deacetylases
R2427 T2878 T2879 compound histone,deacetylases
R2428 T2879 T2875 pobj deacetylases,of
R2429 T2880 T2879 punct (,deacetylases
R2430 T2881 T2879 appos HDACs,deacetylases
R2431 T2882 T2879 punct ),deacetylases
R2432 T2883 T2871 prep during,phosphorylation
R2433 T2884 T2885 compound BCR,engagement
R2434 T2885 T2883 pobj engagement,during
R2435 T2886 T2869 ccomp is,demonstrated
R2436 T2887 T2886 acomp defective,is
R2437 T2888 T2886 prep in,is
R2438 T2889 T2894 nummod PKD1/3,cells
R2439 T2890 T2894 nummod −,cells
R2440 T2891 T2894 nmod /,cells
R2441 T2892 T2894 compound −,cells
R2442 T2893 T2894 compound B,cells
R2443 T2894 T2888 pobj cells,in
R2444 T2895 T2886 cc and,is
R2445 T2896 T2897 aux can,restored
R2446 T2897 T2886 conj restored,is
R2451 T2902 T2904 amod single,isoform
R2447 T2898 T2897 prep upon,restored
R2448 T2899 T2898 pobj re-expression,upon
R2449 T2900 T2899 prep of,re-expression
R2450 T2901 T2904 det a,isoform
R2452 T2903 T2904 compound PKD,isoform
R2453 T2904 T2900 pobj isoform,of
R2454 T2905 T2907 nmod [,]
R2455 T2906 T2907 nummod 1,]
R2456 T2907 T2869 dobj ],demonstrated
R2457 T2908 T2869 punct .,demonstrated

GO-BP

Id Subject Object Predicate Lexical cue
T2273 38-53 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T3141 167-172 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2263 0-237 Sentence denotes Previously, we have demonstrated that phosphorylation and nuclear exclusion of class II histone deacetylases (HDACs) during BCR engagement is defective in PKD1/3−/− B cells and can restored upon re-expression of a single PKD isoform [1].
T41 0-237 Sentence denotes Previously, we have demonstrated that phosphorylation and nuclear exclusion of class II histone deacetylases (HDACs) during BCR engagement is defective in PKD1/3−/− B cells and can restored upon re-expression of a single PKD isoform [1].

events-check-again

Id Subject Object Predicate Lexical cue
T3564 155-159 Protein denotes PKD1
T3565 160-161 Protein denotes 3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3654 79-108 Protein denotes class II histone deacetylases
T3655 110-115 Protein denotes HDACs
T3656 124-127 Protein denotes BCR
T3657 155-159 Protein denotes PKD1
T3658 38-53 Phosphorylation denotes phosphorylation
T3659 38-53 Phosphorylation denotes phosphorylation
T3660 128-138 Binding denotes engagement
T3661 181-189 Positive_regulation denotes restored
T3662 181-189 Positive_regulation denotes restored
R3001 T3654 T3658 themeOf class II histone deacetylases,phosphorylation
R3010 T3655 T3659 themeOf HDACs,phosphorylation
R3012 T3656 T3660 themeOf BCR,engagement
R3016 T3658 T3661 themeOf phosphorylation,restored
R3019 T3659 T3662 themeOf phosphorylation,restored

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2201 155-159 Protein denotes PKD1
T2202 160-161 Protein denotes 3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2687 124-127 P11274 denotes BCR
T2688 155-159 P98161 denotes PKD1

test2

Id Subject Object Predicate Lexical cue
T2122 155-159 Protein denotes PKD1
T2123 160-161 Protein denotes 3