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PMC:1942070 / 3700-4529 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
17349631-16449666-30580532 222-223 16449666 denotes 1
17349631-16449666-30580533 335-336 16449666 denotes 1
17349631-7730364-30580534 413-415 7730364 denotes 29

MyTest

Id Subject Object Predicate Lexical cue
17349631-16449666-30580532 222-223 16449666 denotes 1
17349631-16449666-30580533 335-336 16449666 denotes 1
17349631-7730364-30580534 413-415 7730364 denotes 29

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1675 36-43 NN denotes culture
T1676 43-44 -COMMA- denotes ,
T1677 45-54 JJ denotes transient
T1678 55-68 NN denotes transfections
T1679 69-72 CC denotes and
T1680 73-77 NN denotes cell
T1681 78-89 NN denotes stimulation
T1682 90-93 DT denotes The
T1683 94-104 NN denotes generation
T1684 104-105 -COMMA- denotes ,
T1685 106-113 NN denotes culture
T1686 114-117 CC denotes and
T1687 118-128 NN denotes activation
T1688 129-131 IN denotes of
T1689 132-139 NN denotes PKD1−/−
T1690 139-140 -COMMA- denotes ,
T1691 141-148 NN denotes PKD3−/−
T1692 149-152 CC denotes and
T1693 153-162 NN denotes PKD1/3−/−
T1694 163-171 NN denotes knockout
T1695 172-176 NN denotes DT40
T1696 177-178 NN denotes B
T1697 179-183 NN denotes cell
T1698 184-189 NN denotes lines
T1699 190-194 VB denotes have
T1700 195-199 VB denotes been
T1701 200-209 VB denotes described
T1702 210-220 RB denotes previously
T1703 221-222 -LRB- denotes [
T1704 222-223 CD denotes 1
T1705 223-224 -RRB- denotes ]
T1706 226-231 NN denotes Cells
T1707 232-236 VB denotes were
T1708 237-242 VB denotes lysed
T1709 243-246 CC denotes and
T1710 247-254 NN denotes protein
T1711 255-263 NN denotes extracts
T1712 264-268 VB denotes were
T1713 269-277 VB denotes analysed
T1714 278-280 IN denotes in
T1715 281-288 JJ denotes Western
T1716 289-297 NN denotes blotting
T1717 298-309 NN denotes experiments
T1718 310-312 IN denotes as
T1719 313-323 RB denotes previously
T1720 324-333 VB denotes described
T1721 334-335 -LRB- denotes [
T1873 451-452 -LRB- denotes (
T1874 452-459 CD denotes 2 × 106
T1875 460-465 NN denotes cells
T1876 466-469 IN denotes per
T1877 470-475 NN denotes point
T1878 475-476 -RRB- denotes )
T1879 477-481 VB denotes were
T1880 482-493 VB denotes resuspended
T1881 494-496 IN denotes in
T1882 497-503 NN denotes 200 μl
T1883 504-510 NN denotes buffer
T1884 511-512 -LRB- denotes (
T1885 512-516 NN denotes RPMI
T1886 517-521 CD denotes 1640
T1887 522-527 NN denotes media
T1888 527-528 -COMMA- denotes ,
T1889 529-530 CD denotes 1
T1890 530-531 NN denotes %
T1891 532-538 JJ denotes foetal
T1892 539-543 NN denotes calf
T1893 544-549 NN denotes serum
T1894 549-550 -RRB- denotes )
T1895 551-561 VB denotes containing
T1896 562-574 JJ denotes anti-chicken
T1897 575-577 NN denotes M1
T1898 578-588 JJ denotes monoclonal
T1899 589-597 NN denotes antibody
T1900 598-608 VB denotes conjugated
T1901 609-611 TO denotes to
T1902 612-616 NN denotes FITC
T1903 617-620 IN denotes for
T1904 621-627 NN denotes 20 min
T1905 628-630 IN denotes on
T1906 631-634 NN denotes ice
T1907 636-639 DT denotes The
T1908 640-645 NN denotes cells
T1909 646-650 VB denotes were
T1910 651-657 VB denotes washed
T1911 658-663 RB denotes twice
T1912 664-667 CC denotes and
T1913 668-679 JJ denotes fluorescent
T1914 680-689 NN denotes intensity
T1915 690-693 VB denotes was
T1916 694-702 VB denotes analysed
T1917 703-705 IN denotes by
T1918 706-710 NN denotes flow
T1919 711-720 NN denotes cytometry
T1920 722-725 DT denotes All
T1921 726-733 NN denotes results
T1922 734-739 VB denotes shown
T1923 740-743 VB denotes are
T1924 744-758 JJ denotes representative
T1925 759-761 IN denotes of
T1926 762-764 IN denotes at
T1927 765-768 CD denotes two
T1928 769-771 TO denotes to
T1929 772-776 CD denotes four
T1930 777-788 JJ denotes independent
T1931 789-800 NN denotes experiments
T1932 801-807 IN denotes unless
T1933 808-817 RB denotes otherwise
T1934 818-827 VB denotes indicated
T1722 335-336 CD denotes 1
T1723 336-337 -RRB- denotes ]
T1724 339-354 NN denotes Chloramphenicol
T1725 355-361 NN denotes acetyl
T1726 362-373 NN denotes transferase
T1727 374-380 NN denotes assays
T1728 381-385 VB denotes have
T1729 386-390 VB denotes been
T1730 391-400 VB denotes described
T1731 401-411 RB denotes previously
T1732 412-413 -LRB- denotes [
T1733 413-415 CD denotes 29
T1734 415-416 -RRB- denotes ]
T1869 429-437 NN denotes staining
T1870 438-442 NN denotes DT40
T1871 443-444 NN denotes B
T1872 445-450 NN denotes cells
R1438 T1675 T1676 arg1Of culture,","
R1439 T1676 T1679 arg1Of ",",and
R1440 T1678 T1676 arg2Of transfections,","
R1441 T1678 T1677 arg1Of transfections,transient
R1442 T1681 T1679 arg2Of stimulation,and
R1443 T1681 T1680 arg1Of stimulation,cell
R1444 T1683 T1684 arg1Of generation,","
R1445 T1684 T1686 arg1Of ",",and
R1446 T1685 T1684 arg2Of culture,","
R1447 T1686 T1682 arg1Of and,The
R1448 T1686 T1688 arg1Of and,of
R1449 T1686 T1699 arg1Of and,have
R1450 T1686 T1700 arg1Of and,been
R1451 T1686 T1701 arg2Of and,described
R1452 T1687 T1686 arg2Of activation,and
R1453 T1689 T1690 arg1Of PKD1−/−,","
R1454 T1690 T1692 arg1Of ",",and
R1455 T1691 T1690 arg2Of PKD3−/−,","
R1456 T1693 T1692 arg2Of PKD1/3−/−,and
R1457 T1698 T1688 arg2Of lines,of
R1458 T1698 T1689 arg1Of lines,PKD1−/−
R1459 T1698 T1691 arg1Of lines,PKD3−/−
R1460 T1698 T1693 arg1Of lines,PKD1/3−/−
R1461 T1698 T1694 arg1Of lines,knockout
R1462 T1698 T1695 arg1Of lines,DT40
R1463 T1698 T1696 arg1Of lines,B
R1464 T1698 T1697 arg1Of lines,cell
R1465 T1701 T1699 arg2Of described,have
R1466 T1701 T1700 arg2Of described,been
R1467 T1701 T1702 arg1Of described,previously
R1468 T1701 T1703 arg1Of described,[
R1469 T1704 T1703 arg2Of 1,[
R1470 T1705 T1703 arg3Of ],[
R1471 T1706 T1707 arg1Of Cells,were
R1472 T1706 T1708 arg2Of Cells,lysed
R1473 T1708 T1707 arg2Of lysed,were
R1474 T1708 T1709 arg1Of lysed,and
R1475 T1711 T1710 arg1Of extracts,protein
R1476 T1711 T1712 arg1Of extracts,were
R1477 T1711 T1713 arg2Of extracts,analysed
R1478 T1713 T1709 arg2Of analysed,and
R1479 T1713 T1712 arg2Of analysed,were
R1480 T1713 T1714 arg1Of analysed,in
R1481 T1713 T1718 arg1Of analysed,as
R1482 T1717 T1714 arg2Of experiments,in
R1483 T1717 T1715 arg1Of experiments,Western
R1484 T1717 T1716 arg1Of experiments,blotting
R1485 T1720 T1719 arg1Of described,previously
R1486 T1722 T1718 arg2Of 1,as
R1487 T1722 T1720 arg1Of 1,described
R1488 T1722 T1721 arg2Of 1,[
R1489 T1723 T1721 arg3Of ],[
R1490 T1727 T1724 arg1Of assays,Chloramphenicol
R1491 T1727 T1725 arg1Of assays,acetyl
R1492 T1727 T1726 arg1Of assays,transferase
R1493 T1727 T1728 arg1Of assays,have
R1494 T1727 T1729 arg1Of assays,been
R1495 T1727 T1730 arg2Of assays,described
R1496 T1730 T1728 arg2Of described,have
R1497 T1730 T1729 arg2Of described,been
R1498 T1730 T1731 arg1Of described,previously
R1499 T1730 T1732 arg1Of described,[
R1500 T1733 T1732 arg2Of 29,[
R1501 T1734 T1732 arg3Of ],[
R1598 T1872 T1870 arg1Of cells,DT40
R1599 T1872 T1871 arg1Of cells,B
R1600 T1872 T1873 arg1Of cells,(
R1601 T1872 T1880 arg2Of cells,resuspended
R1604 T1875 T1873 arg2Of cells,(
R1606 T1878 T1873 arg3Of ),(
R1607 T1880 T1879 arg2Of resuspended,were
R1608 T1880 T1881 arg1Of resuspended,in
R1609 T1883 T1881 arg2Of buffer,in
R1610 T1883 T1882 arg1Of buffer,200 μl
R1611 T1883 T1884 arg1Of buffer,(
R1613 T1887 T1884 arg2Of media,(
R1614 T1887 T1885 arg1Of media,RPMI
R1615 T1887 T1886 arg1Of media,1640
R1616 T1887 T1888 arg1Of media,","
R1618 T1893 T1888 arg2Of serum,","
R1619 T1893 T1889 arg1Of serum,1
R1622 T1894 T1884 arg3Of ),(
R1653 T1924 T1923 arg2Of representative,are
R1654 T1924 T1926 arg1Of representative,at
R1655 T1926 T1925 arg1Of at,of
R1656 T1927 T1928 arg1Of two,to
R1657 T1929 T1928 arg2Of four,to
R1658 T1931 T1926 arg2Of experiments,at
R1659 T1931 T1927 arg1Of experiments,two
R1660 T1931 T1930 arg1Of experiments,independent
R1661 T1934 T1932 arg2Of indicated,unless
R1662 T1934 T1933 arg1Of indicated,otherwise
R1597 T1872 T1879 arg1Of cells,were
R1602 T1875 T1874 arg1Of cells,2 × 106
R1603 T1875 T1876 arg1Of cells,per
R1605 T1877 T1876 arg2Of point,per
R1612 T1883 T1895 arg1Of buffer,containing
R1617 T1889 T1890 arg1Of 1,%
R1620 T1893 T1891 arg1Of serum,foetal
R1621 T1893 T1892 arg1Of serum,calf
R1623 T1899 T1895 arg2Of antibody,containing
R1624 T1899 T1896 arg1Of antibody,anti-chicken
R1625 T1899 T1897 arg1Of antibody,M1
R1626 T1899 T1898 arg1Of antibody,monoclonal
R1627 T1899 T1900 arg2Of antibody,conjugated
R1628 T1900 T1901 arg1Of conjugated,to
R1629 T1902 T1901 arg2Of FITC,to
R1630 T1902 T1903 arg1Of FITC,for
R1631 T1904 T1903 arg2Of 20 min,for
R1632 T1904 T1905 arg1Of 20 min,on
R1633 T1906 T1905 arg2Of ice,on
R1634 T1908 T1907 arg1Of cells,The
R1635 T1908 T1909 arg1Of cells,were
R1636 T1908 T1910 arg2Of cells,washed
R1637 T1910 T1909 arg2Of washed,were
R1638 T1910 T1911 arg1Of washed,twice
R1639 T1910 T1912 arg1Of washed,and
R1640 T1914 T1913 arg1Of intensity,fluorescent
R1641 T1914 T1915 arg1Of intensity,was
R1642 T1914 T1916 arg2Of intensity,analysed
R1643 T1916 T1912 arg2Of analysed,and
R1644 T1916 T1915 arg2Of analysed,was
R1645 T1919 T1916 arg1Of cytometry,analysed
R1646 T1919 T1917 arg2Of cytometry,by
R1647 T1919 T1918 arg1Of cytometry,flow
R1648 T1921 T1920 arg1Of results,All
R1649 T1921 T1922 arg2Of results,shown
R1650 T1921 T1923 arg1Of results,are
R1651 T1921 T1924 arg1Of results,representative
R1652 T1923 T1932 arg1Of are,unless

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1743 31-35 NNP denotes Cell
T1744 36-43 NN denotes culture
T1745 43-44 , denotes ,
T1746 45-54 NN denotes transient
T1747 55-68 NNS denotes transfections
T1748 69-72 CC denotes and
T1749 73-77 NN denotes cell
T1750 78-89 NN denotes stimulation
T1751 90-93 DT denotes The
T1752 94-104 NN denotes generation
T1753 104-105 , denotes ,
T1754 106-113 NN denotes culture
T1755 114-117 CC denotes and
T1756 118-128 NN denotes activation
T1757 129-131 IN denotes of
T1758 132-136 CD denotes PKD1
T1759 136-137 CD denotes −
T1760 137-138 NN denotes /
T1761 138-139 NN denotes −
T1762 139-140 , denotes ,
T1763 141-145 NNP denotes PKD3
T1764 145-146 NNP denotes −
T1765 146-147 VBD denotes /
T1766 147-148 CD denotes −
T1767 149-152 CC denotes and
T1768 153-159 CD denotes PKD1/3
T1769 159-160 CD denotes −
T1770 160-161 NN denotes /
T1771 161-162 NN denotes −
T1772 163-171 NN denotes knockout
T1773 172-176 NNP denotes DT40
T1774 177-178 NNP denotes B
T1775 179-183 NN denotes cell
T1776 184-189 NNS denotes lines
T1777 190-194 VBP denotes have
T1778 195-199 VBN denotes been
T1779 200-209 VBN denotes described
T1780 210-220 RB denotes previously
T1781 221-222 NNP denotes [
T1782 222-223 CD denotes 1
T1783 223-224 NNP denotes ]
T1784 224-225 . denotes .
T1785 226-231 NNS denotes Cells
T1786 232-236 VBD denotes were
T1787 237-242 VBN denotes lysed
T1788 243-246 CC denotes and
T1789 247-254 NN denotes protein
T1790 255-263 NNS denotes extracts
T1791 264-268 VBD denotes were
T1792 269-277 VBN denotes analysed
T1793 278-280 IN denotes in
T1794 281-288 JJ denotes Western
T1795 289-297 VBG denotes blotting
T1796 298-309 NNS denotes experiments
T1797 310-312 IN denotes as
T1798 313-323 RB denotes previously
T1799 324-333 VBN denotes described
T1800 334-335 NNP denotes [
T1801 335-336 CD denotes 1
T1802 336-337 NNP denotes ]
T1803 337-338 . denotes .
T1804 339-354 NNP denotes Chloramphenicol
T1805 355-361 NN denotes acetyl
T1806 362-373 NN denotes transferase
T1807 374-380 NNS denotes assays
T1808 381-385 VBP denotes have
T1809 386-390 VBN denotes been
T1810 391-400 VBN denotes described
T1811 401-411 RB denotes previously
T1812 412-413 NNP denotes [
T1813 413-415 CD denotes 29
T1814 415-416 NNP denotes ]
T1815 416-417 . denotes .
T1940 424-428 JJ denotes sIgM
T1941 429-437 VBG denotes staining
T1942 438-442 NNP denotes DT40
T1943 443-444 NNP denotes B
T1944 445-450 NNS denotes cells
T1945 451-452 -LRB- denotes (
T1946 452-453 CD denotes 2
T1947 454-455 CD denotes ×
T1948 456-459 CD denotes 106
T1949 460-465 NNS denotes cells
T1950 466-469 IN denotes per
T1951 470-475 NN denotes point
T1952 475-476 -RRB- denotes )
T1953 477-481 VBD denotes were
T1954 482-493 VBN denotes resuspended
T1955 494-496 IN denotes in
T1956 497-500 CD denotes 200
T1957 501-503 NN denotes μl
T1958 504-510 NN denotes buffer
T1959 511-512 -LRB- denotes (
T1960 512-516 NNP denotes RPMI
T1961 517-521 CD denotes 1640
T1962 522-527 NNS denotes media
T1963 527-528 , denotes ,
T1964 529-530 CD denotes 1
T1965 530-531 NN denotes %
T1966 532-538 JJ denotes foetal
T1967 539-543 NN denotes calf
T1968 544-549 NN denotes serum
T1969 549-550 -RRB- denotes )
T1970 551-561 VBG denotes containing
T1971 562-574 JJ denotes anti-chicken
T1972 575-577 CD denotes M1
T1973 578-588 JJ denotes monoclonal
T1974 589-597 NN denotes antibody
T1975 598-608 VBN denotes conjugated
T1976 609-611 TO denotes to
T1977 612-616 NNP denotes FITC
T1978 617-620 IN denotes for
T1979 621-623 CD denotes 20
T1980 624-627 NN denotes min
T1981 628-630 IN denotes on
T1982 631-634 NN denotes ice
T1983 634-635 . denotes .
T1984 636-639 DT denotes The
T1985 640-645 NNS denotes cells
T1986 646-650 VBD denotes were
T1987 651-657 VBN denotes washed
T1988 658-663 RB denotes twice
T1989 664-667 CC denotes and
T1990 668-679 JJ denotes fluorescent
T1991 680-689 NN denotes intensity
T1992 690-693 VBD denotes was
T1993 694-702 VBN denotes analysed
T1994 703-705 IN denotes by
T1995 706-710 NN denotes flow
T1996 711-720 NN denotes cytometry
T1997 720-721 . denotes .
T1998 722-725 DT denotes All
T1999 726-733 NNS denotes results
T2000 734-739 VBN denotes shown
T2001 740-743 VBP denotes are
T2002 744-758 NN denotes representative
T2003 759-761 IN denotes of
T2004 762-764 IN denotes at
T2005 765-768 CD denotes two
T2006 769-771 TO denotes to
T2007 772-776 CD denotes four
T2008 777-788 JJ denotes independent
T2009 789-800 NNS denotes experiments
T2010 801-807 IN denotes unless
T2011 808-817 RB denotes otherwise
T2012 818-827 VBN denotes indicated
T2013 827-828 . denotes .
R1519 T1759 T1761 nummod −,−
R1520 T1760 T1761 compound /,−
R1521 T1761 T1757 pobj −,of
R1522 T1762 T1765 punct ",",/
R1523 T1763 T1764 compound PKD3,−
R1524 T1764 T1765 nsubj −,/
R1525 T1765 T1765 ROOT /,/
R1526 T1766 T1776 nummod −,lines
R1527 T1767 T1766 cc and,−
R1528 T1768 T1776 nummod PKD1/3,lines
R1529 T1769 T1776 nummod −,lines
R1530 T1770 T1772 nmod /,knockout
R1531 T1771 T1772 compound −,knockout
R1532 T1772 T1776 compound knockout,lines
R1533 T1773 T1774 compound DT40,B
R1534 T1774 T1775 compound B,cell
R1535 T1775 T1776 compound cell,lines
R1536 T1776 T1779 nsubjpass lines,described
R1537 T1777 T1779 aux have,described
R1538 T1778 T1779 auxpass been,described
R1539 T1779 T1765 ccomp described,/
R1540 T1780 T1783 advmod previously,]
R1541 T1781 T1783 nmod [,]
R1542 T1782 T1781 nummod 1,[
R1543 T1783 T1779 dobj ],described
R1544 T1784 T1765 punct .,/
R1545 T1785 T1787 nsubjpass Cells,lysed
R1546 T1786 T1787 auxpass were,lysed
R1547 T1787 T1787 ROOT lysed,lysed
R1548 T1788 T1787 cc and,lysed
R1549 T1789 T1790 compound protein,extracts
R1550 T1790 T1792 nsubjpass extracts,analysed
R1551 T1791 T1792 auxpass were,analysed
R1552 T1792 T1787 conj analysed,lysed
R1553 T1793 T1792 prep in,analysed
R1554 T1794 T1796 amod Western,experiments
R1555 T1795 T1796 amod blotting,experiments
R1556 T1796 T1793 pobj experiments,in
R1557 T1797 T1799 mark as,described
R1558 T1798 T1799 advmod previously,described
R1559 T1799 T1792 advcl described,analysed
R1560 T1800 T1802 nmod [,]
R1561 T1801 T1802 nummod 1,]
R1562 T1802 T1799 dobj ],described
R1563 T1803 T1792 punct .,analysed
R1564 T1804 T1807 nmod Chloramphenicol,assays
R1565 T1805 T1807 nmod acetyl,assays
R1566 T1806 T1807 compound transferase,assays
R1567 T1807 T1810 nsubjpass assays,described
R1568 T1808 T1810 aux have,described
R1569 T1809 T1810 auxpass been,described
R1570 T1810 T1810 ROOT described,described
R1571 T1811 T1814 advmod previously,]
R1572 T1812 T1814 nmod [,]
R1573 T1813 T1814 nummod 29,]
R1574 T1814 T1810 dobj ],described
R1575 T1815 T1810 punct .,described
R1664 T1940 T1944 amod sIgM,cells
R1665 T1941 T1944 amod staining,cells
R1666 T1942 T1943 compound DT40,B
R1667 T1943 T1944 compound B,cells
R1668 T1944 T1954 nsubjpass cells,resuspended
R1669 T1945 T1944 punct (,cells
R1670 T1946 T1949 nummod 2,cells
R1671 T1947 T1949 nummod ×,cells
R1677 T1953 T1954 auxpass were,resuspended
R1678 T1954 T1954 ROOT resuspended,resuspended
R1679 T1955 T1954 prep in,resuspended
R1680 T1956 T1958 nummod 200,buffer
R1681 T1957 T1958 compound μl,buffer
R1682 T1958 T1955 pobj buffer,in
R1683 T1959 T1958 punct (,buffer
R1684 T1960 T1962 compound RPMI,media
R1685 T1961 T1962 compound 1640,media
R1686 T1962 T1958 appos media,buffer
R1687 T1963 T1962 punct ",",media
R1688 T1964 T1965 nummod 1,%
R1689 T1965 T1968 nmod %,serum
R1690 T1966 T1968 amod foetal,serum
R1691 T1967 T1968 compound calf,serum
R1692 T1968 T1962 appos serum,media
R1693 T1969 T1962 punct ),media
R1694 T1970 T1958 acl containing,buffer
R1695 T1971 T1975 amod anti-chicken,conjugated
R1696 T1972 T1974 nummod M1,antibody
R1697 T1973 T1974 amod monoclonal,antibody
R1698 T1974 T1975 compound antibody,conjugated
R1699 T1975 T1954 conj conjugated,resuspended
R1700 T1976 T1975 prep to,conjugated
R1701 T1977 T1976 pobj FITC,to
R1702 T1978 T1975 prep for,conjugated
R1703 T1979 T1980 nummod 20,min
R1704 T1980 T1978 pobj min,for
R1705 T1981 T1980 prep on,min
R1706 T1982 T1981 pobj ice,on
R1707 T1983 T1954 punct .,resuspended
R1708 T1984 T1985 det The,cells
R1709 T1985 T1987 nsubjpass cells,washed
R1710 T1986 T1987 auxpass were,washed
R1711 T1987 T1987 ROOT washed,washed
R1712 T1988 T1987 advmod twice,washed
R1713 T1989 T1988 cc and,twice
R1714 T1990 T1991 amod fluorescent,intensity
R1715 T1991 T1993 nsubjpass intensity,analysed
R1716 T1992 T1993 auxpass was,analysed
R1717 T1993 T1987 conj analysed,washed
R1718 T1994 T1993 agent by,analysed
R1719 T1995 T1996 compound flow,cytometry
R1720 T1996 T1994 pobj cytometry,by
R1721 T1997 T1993 punct .,analysed
R1722 T1998 T1999 det All,results
R1723 T1999 T2001 nsubj results,are
R1724 T2000 T1999 acl shown,results
R1725 T2001 T2001 ROOT are,are
R1726 T2002 T2001 attr representative,are
R1727 T2003 T2002 prep of,representative
R1728 T2004 T2001 prep at,are
R1729 T2005 T2007 quantmod two,four
R1730 T2006 T2007 quantmod to,four
R1731 T2007 T2009 nummod four,experiments
R1732 T2008 T2009 amod independent,experiments
R1733 T2009 T2004 pobj experiments,at
R1734 T2010 T2012 mark unless,indicated
R1735 T2011 T2012 advmod otherwise,indicated
R1736 T2012 T2001 advcl indicated,are
R1737 T2013 T2001 punct .,are
R1503 T1743 T1744 compound Cell,culture
R1504 T1744 T1744 ROOT culture,culture
R1505 T1745 T1744 punct ",",culture
R1506 T1746 T1747 compound transient,transfections
R1507 T1747 T1744 appos transfections,culture
R1508 T1748 T1747 cc and,transfections
R1509 T1749 T1750 compound cell,stimulation
R1510 T1750 T1747 conj stimulation,transfections
R1511 T1751 T1752 det The,generation
R1512 T1752 T1765 nsubj generation,/
R1513 T1753 T1752 punct ",",generation
R1514 T1754 T1752 conj culture,generation
R1515 T1755 T1754 cc and,culture
R1516 T1756 T1754 conj activation,culture
R1517 T1757 T1752 prep of,generation
R1518 T1758 T1761 nummod PKD1,−
R1672 T1948 T1949 nummod 106,cells
R1673 T1949 T1944 appos cells,cells
R1674 T1950 T1949 prep per,cells
R1675 T1951 T1950 pobj point,per
R1676 T1952 T1944 punct ),cells

UBERON-AE

Id Subject Object Predicate Lexical cue
T1863 544-549 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-MF

Id Subject Object Predicate Lexical cue
T2014 589-597 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T1816 73-77 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1817 179-183 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2015 445-450 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2016 460-465 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2017 640-645 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2018 589-597 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T2019 589-597 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T1671 90-225 Sentence denotes The generation, culture and activation of PKD1−/−, PKD3−/− and PKD1/3−/− knockout DT40 B cell lines have been described previously [1].
T1672 226-338 Sentence denotes Cells were lysed and protein extracts were analysed in Western blotting experiments as previously described [1].
T1673 339-417 Sentence denotes Chloramphenicol acetyl transferase assays have been described previously [29].
T1865 438-635 Sentence denotes DT40 B cells (2 × 106 cells per point) were resuspended in 200 μl buffer (RPMI 1640 media, 1% foetal calf serum) containing anti-chicken M1 monoclonal antibody conjugated to FITC for 20 min on ice.
T1866 636-721 Sentence denotes The cells were washed twice and fluorescent intensity was analysed by flow cytometry.
T1867 722-828 Sentence denotes All results shown are representative of at two to four independent experiments unless otherwise indicated.
T27 0-24 Sentence denotes 2 Materials and methods
T28 26-89 Sentence denotes 2.1 Cell culture, transient transfections and cell stimulation
T29 90-225 Sentence denotes The generation, culture and activation of PKD1−/−, PKD3−/− and PKD1/3−/− knockout DT40 B cell lines have been described previously [1].
T30 226-338 Sentence denotes Cells were lysed and protein extracts were analysed in Western blotting experiments as previously described [1].
T31 339-417 Sentence denotes Chloramphenicol acetyl transferase assays have been described previously [29].
T32 419-437 Sentence denotes 2.2 sIgM staining
T33 438-635 Sentence denotes DT40 B cells (2 × 106 cells per point) were resuspended in 200 μl buffer (RPMI 1640 media, 1% foetal calf serum) containing anti-chicken M1 monoclonal antibody conjugated to FITC for 20 min on ice.
T34 636-721 Sentence denotes The cells were washed twice and fluorescent intensity was analysed by flow cytometry.
T35 722-828 Sentence denotes All results shown are representative of at two to four independent experiments unless otherwise indicated.

events-check-again

Id Subject Object Predicate Lexical cue
T1851 132-136 Protein denotes PKD1
T1852 141-145 Protein denotes PKD3
T1853 153-157 Protein denotes PKD1
T1854 158-159 Protein denotes 3
T1855 163-171 Negative_regulation denotes knockout
T1856 163-171 Negative_regulation denotes knockout
T1857 163-171 Negative_regulation denotes knockout
T1858 163-171 Negative_regulation denotes knockout
R1592 T1851 T1855 themeOf PKD1,knockout
R1593 T1852 T1856 themeOf PKD3,knockout
R1594 T1853 T1857 themeOf PKD1,knockout
R1595 T1854 T1858 themeOf 3,knockout

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1859 132-136 Protein denotes PKD1
T1860 141-145 Protein denotes PKD3
T1861 153-157 Protein denotes PKD1
T1862 339-373 Protein denotes Chloramphenicol acetyl transferase
T2020 562-597 Protein denotes anti-chicken M1 monoclonal antibody

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1662 132-136 Protein denotes PKD1
T1663 141-145 Protein denotes PKD3
T1664 153-157 Protein denotes PKD1
T1665 158-159 Protein denotes 3
T1666 163-171 Negative_regulation denotes knockout
T1667 163-171 Negative_regulation denotes knockout
T1668 163-171 Negative_regulation denotes knockout
T1669 163-171 Negative_regulation denotes knockout
R1433 T1662 T1666 themeOf PKD1,knockout
R1434 T1663 T1667 themeOf PKD3,knockout
R1435 T1664 T1668 themeOf PKD1,knockout
R1436 T1665 T1669 themeOf 3,knockout

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1737 153-157 P98161 denotes PKD1
T1735 132-136 P98161 denotes PKD1
T1736 141-145 Q99853 denotes PKD3

test2

Id Subject Object Predicate Lexical cue
T1658 132-136 Protein denotes PKD1
T1659 141-145 Protein denotes PKD3
T1660 153-157 Protein denotes PKD1
T1661 158-159 Protein denotes 3