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PMC:1942070 / 13684-13965 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7126 0-2 PRP denotes We
T7127 3-7 VB denotes have
T7128 8-12 VB denotes used
T7129 13-17 NN denotes gene
T7130 18-27 VB denotes targeting
T7131 28-30 TO denotes to
T7132 31-43 RB denotes specifically
T7133 44-50 VB denotes delete
T7134 51-54 NN denotes PKD
T7135 55-62 NN denotes alleles
T7136 63-65 IN denotes in
T7137 66-70 NN denotes DT40
T7138 71-78 NN denotes chicken
T7139 79-80 NN denotes B
T7140 81-86 NN denotes cells
T7141 87-90 CC denotes and
T7142 91-94 MD denotes can
T7143 95-99 RB denotes thus
T7144 100-103 VB denotes use
T7145 104-112 JJ denotes PKD-null
T7146 113-117 NN denotes DT40
T7147 118-123 NN denotes cells
T7148 124-126 TO denotes to
T7149 127-133 VB denotes assess
T7150 134-137 DT denotes the
T7151 138-146 JJ denotes relative
T7152 147-159 NN denotes contribution
T7153 160-162 IN denotes of
T7154 163-173 JJ denotes individual
T7155 174-177 NN denotes PKD
T7156 178-186 NN denotes isoforms
T7157 187-189 IN denotes in
T7158 190-195 NN denotes class
T7159 196-198 CD denotes II
T7160 199-203 NN denotes HDAC
T7161 204-211 NN denotes control
T7162 212-218 IN denotes versus
T7163 219-228 JJ denotes oxidative
T7164 229-235 NN denotes stress
T7165 236-245 NN denotes responses
T7166 246-249 CC denotes and
T7167 250-254 NN denotes NFκB
T7168 255-265 NN denotes regulation
T7169 266-268 IN denotes in
T7170 269-280 NN denotes lymphocytes
R5622 T7126 T7127 arg1Of We,have
R5623 T7126 T7128 arg1Of We,used
R5624 T7126 T7133 arg1Of We,delete
R5625 T7126 T7142 arg1Of We,can
R5626 T7126 T7144 arg1Of We,use
R5627 T7126 T7149 arg1Of We,assess
R5628 T7128 T7127 arg2Of used,have
R5629 T7128 T7141 arg1Of used,and
R5630 T7130 T7128 arg2Of targeting,used
R5631 T7130 T7129 arg1Of targeting,gene
R5632 T7133 T7128 arg3Of delete,used
R5633 T7133 T7131 arg1Of delete,to
R5634 T7133 T7132 arg1Of delete,specifically
R5635 T7135 T7133 arg2Of alleles,delete
R5636 T7135 T7134 arg1Of alleles,PKD
R5637 T7135 T7136 arg1Of alleles,in
R5638 T7140 T7136 arg2Of cells,in
R5639 T7140 T7137 arg1Of cells,DT40
R5640 T7140 T7138 arg1Of cells,chicken
R5641 T7140 T7139 arg1Of cells,B
R5642 T7144 T7141 arg2Of use,and
R5643 T7144 T7142 arg2Of use,can
R5644 T7144 T7143 arg1Of use,thus
R5645 T7144 T7148 modOf use,to
R5646 T7147 T7144 arg2Of cells,use
R5647 T7147 T7145 arg1Of cells,PKD-null
R5648 T7147 T7146 arg1Of cells,DT40
R5649 T7149 T7148 arg1Of assess,to
R5650 T7152 T7149 arg2Of contribution,assess
R5651 T7152 T7150 arg1Of contribution,the
R5652 T7152 T7151 arg1Of contribution,relative
R5653 T7152 T7153 arg1Of contribution,of
R5654 T7152 T7157 arg1Of contribution,in
R5655 T7156 T7153 arg2Of isoforms,of
R5656 T7156 T7154 arg1Of isoforms,individual
R5657 T7156 T7155 arg1Of isoforms,PKD
R5658 T7161 T7158 arg1Of control,class
R5659 T7161 T7159 arg1Of control,II
R5660 T7161 T7160 arg1Of control,HDAC
R5661 T7161 T7162 arg1Of control,versus
R5662 T7161 T7166 arg1Of control,and
R5663 T7165 T7162 arg2Of responses,versus
R5664 T7165 T7163 arg1Of responses,oxidative
R5665 T7165 T7164 arg1Of responses,stress
R5666 T7166 T7157 arg2Of and,in
R5667 T7168 T7166 arg2Of regulation,and
R5668 T7168 T7167 arg1Of regulation,NFκB
R5669 T7168 T7169 arg1Of regulation,in
R5670 T7170 T7169 arg2Of lymphocytes,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7463 0-2 PRP denotes We
T7464 3-7 VBP denotes have
T7465 8-12 VBN denotes used
T7466 13-17 NN denotes gene
T7467 18-27 VBG denotes targeting
T7468 28-30 TO denotes to
T7469 31-43 RB denotes specifically
T7470 44-50 VB denotes delete
T7471 51-54 NNP denotes PKD
T7472 55-62 NNS denotes alleles
T7473 63-65 IN denotes in
T7474 66-70 NNP denotes DT40
T7475 71-78 NN denotes chicken
T7476 79-80 NNP denotes B
T7477 81-86 NNS denotes cells
T7478 87-90 CC denotes and
T7479 91-94 MD denotes can
T7480 95-99 RB denotes thus
T7481 100-103 VB denotes use
T7482 104-112 NNP denotes PKD-null
T7483 113-117 NNP denotes DT40
T7484 118-123 NNS denotes cells
T7485 124-126 TO denotes to
T7486 127-133 VB denotes assess
T7487 134-137 DT denotes the
T7488 138-146 JJ denotes relative
T7489 147-159 NN denotes contribution
T7490 160-162 IN denotes of
T7491 163-173 JJ denotes individual
T7492 174-177 NNP denotes PKD
T7493 178-186 NNS denotes isoforms
T7494 187-189 IN denotes in
T7495 190-195 NN denotes class
T7496 196-198 NNP denotes II
T7497 199-203 NNP denotes HDAC
T7498 204-211 NN denotes control
T7499 212-218 IN denotes versus
T7500 219-228 JJ denotes oxidative
T7501 229-235 NN denotes stress
T7502 236-245 NNS denotes responses
T7503 246-249 CC denotes and
T7504 250-254 NNP denotes NFκB
T7505 255-265 NN denotes regulation
T7506 266-268 IN denotes in
T7507 269-280 NNS denotes lymphocytes
T7508 280-281 . denotes .
R5968 T7481 T7470 conj use,delete
R5969 T7482 T7483 compound PKD-null,DT40
R5970 T7483 T7484 compound DT40,cells
R5971 T7484 T7481 dobj cells,use
R5972 T7485 T7486 aux to,assess
R5973 T7486 T7481 xcomp assess,use
R5974 T7487 T7489 det the,contribution
R5975 T7488 T7489 amod relative,contribution
R5976 T7489 T7486 dobj contribution,assess
R5977 T7490 T7489 prep of,contribution
R5978 T7491 T7493 amod individual,isoforms
R5979 T7492 T7493 compound PKD,isoforms
R5980 T7493 T7490 pobj isoforms,of
R5981 T7494 T7493 prep in,isoforms
R5982 T7495 T7494 pobj class,in
R5983 T7496 T7497 compound II,HDAC
R5984 T7497 T7498 compound HDAC,control
R5985 T7498 T7489 conj control,contribution
R5986 T7499 T7498 prep versus,control
R5987 T7500 T7502 amod oxidative,responses
R5988 T7501 T7502 compound stress,responses
R5989 T7502 T7499 pobj responses,versus
R5990 T7503 T7502 cc and,responses
R5991 T7504 T7505 compound NFκB,regulation
R5992 T7505 T7502 conj regulation,responses
R5993 T7506 T7505 prep in,regulation
R5994 T7507 T7506 pobj lymphocytes,in
R5995 T7508 T7465 punct .,used
R5950 T7463 T7465 nsubj We,used
R5951 T7464 T7465 aux have,used
R5952 T7465 T7465 ROOT used,used
R5953 T7466 T7465 dobj gene,used
R5954 T7467 T7466 acl targeting,gene
R5955 T7468 T7470 aux to,delete
R5956 T7469 T7470 advmod specifically,delete
R5957 T7470 T7467 xcomp delete,targeting
R5958 T7471 T7472 compound PKD,alleles
R5959 T7472 T7470 dobj alleles,delete
R5960 T7473 T7470 prep in,delete
R5961 T7474 T7477 compound DT40,cells
R5962 T7475 T7476 compound chicken,B
R5963 T7476 T7477 compound B,cells
R5964 T7477 T7473 pobj cells,in
R5965 T7478 T7470 cc and,delete
R5966 T7479 T7481 aux can,use
R5967 T7480 T7481 advmod thus,use

GO-BP

Id Subject Object Predicate Lexical cue
T7025 219-245 http://purl.obolibrary.org/obo/GO_1902883 denotes oxidative stress responses
T7027 219-245 http://purl.obolibrary.org/obo/GO_0006979 denotes oxidative stress responses
T7029 219-245 http://purl.obolibrary.org/obo/GO_0097468 denotes oxidative stress responses
T7031 219-245 http://purl.obolibrary.org/obo/GO_1902884 denotes oxidative stress responses
T7033 219-245 http://purl.obolibrary.org/obo/GO_0034599 denotes oxidative stress responses
T7035 229-245 http://purl.obolibrary.org/obo/GO_0006950 denotes stress responses
T7036 255-265 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

GO-CC

Id Subject Object Predicate Lexical cue
T7701 81-86 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7702 118-123 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7010 0-281 Sentence denotes We have used gene targeting to specifically delete PKD alleles in DT40 chicken B cells and can thus use PKD-null DT40 cells to assess the relative contribution of individual PKD isoforms in class II HDAC control versus oxidative stress responses and NFκB regulation in lymphocytes.
T90 0-281 Sentence denotes We have used gene targeting to specifically delete PKD alleles in DT40 chicken B cells and can thus use PKD-null DT40 cells to assess the relative contribution of individual PKD isoforms in class II HDAC control versus oxidative stress responses and NFκB regulation in lymphocytes.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7805 51-62 Protein denotes PKD alleles
T7806 104-107 Protein denotes PKD
T7807 174-186 Protein denotes PKD isoforms
T7808 250-254 Protein denotes NFκB
T7809 255-265 Regulation denotes regulation
R6241 T7808 T7809 themeOf NFκB,regulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7360 138-146 Q04864 denotes relative