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PMC:1942070 / 0-388 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T49 180-187 NN denotes protein
T50 188-194 NN denotes kinase
T51 195-196 NN denotes D
T52 197-198 -LRB- denotes (
T53 198-201 NN denotes PKD
T54 201-202 -RRB- denotes )
T55 203-210 NN denotes enzymes
T56 211-213 PRP denotes we
T57 214-223 VB denotes generated
T58 224-225 DT denotes a
T59 226-234 JJ denotes PKD-null
T60 235-239 NN denotes DT40
T61 240-252 NN denotes B-lymphocyte
T62 253-257 NN denotes cell
T63 258-262 NN denotes line
T64 264-274 RB denotes Previously
T65 275-277 PRP denotes we
T66 278-282 VB denotes have
T67 283-288 VB denotes shown
T68 289-293 IN denotes that
T69 294-298 NN denotes PKDs
T70 299-303 VB denotes have
T71 304-306 DT denotes an
T72 307-316 JJ denotes essential
T73 317-321 NN denotes role
T74 322-324 IN denotes in
T75 325-335 VB denotes regulating
T76 336-341 NN denotes class
T77 342-344 CD denotes II
T78 345-352 NN denotes histone
T79 353-365 NN denotes deacetylases
T80 366-368 IN denotes in
T81 369-373 NN denotes DT40
T82 374-381 NN denotes B-cells
T83 382-383 -LRB- denotes [
T26 0-7 NN denotes Protein
T27 8-14 NN denotes kinase
T28 15-16 NN denotes D
T29 17-24 NN denotes enzymes
T30 25-28 VB denotes are
T31 29-40 JJ denotes dispensable
T32 41-44 IN denotes for
T33 45-58 NN denotes proliferation
T34 58-59 -COMMA- denotes ,
T35 60-68 NN denotes survival
T36 69-72 CC denotes and
T37 73-80 NN denotes antigen
T38 81-99 JJ denotes receptor-regulated
T39 100-104 NN denotes NFκB
T40 105-113 NN denotes activity
T41 114-116 IN denotes in
T42 117-127 NN denotes vertebrate
T43 128-135 NN denotes B-cells
T44 147-149 TO denotes To
T45 150-161 VB denotes investigate
T46 162-165 DT denotes the
T47 166-176 NN denotes importance
T48 177-179 IN denotes of
R9 T51 T52 arg1Of D,(
R10 T53 T52 arg2Of PKD,(
R11 T54 T52 arg3Of ),(
R15 T56 T57 arg1Of we,generated
R17 T63 T57 arg2Of line,generated
R18 T63 T58 arg1Of line,a
R19 T63 T59 arg1Of line,PKD-null
R20 T63 T60 arg1Of line,DT40
R21 T63 T61 arg1Of line,B-lymphocyte
R22 T63 T62 arg1Of line,cell
R23 T65 T66 arg1Of we,have
R24 T65 T67 arg1Of we,shown
R25 T67 T64 arg1Of shown,Previously
R26 T67 T66 arg2Of shown,have
R27 T69 T70 arg1Of PKDs,have
R28 T70 T67 arg2Of have,shown
R29 T70 T68 arg1Of have,that
R30 T70 T74 arg1Of have,in
R31 T73 T70 arg2Of role,have
R32 T73 T71 arg1Of role,an
R33 T73 T72 arg1Of role,essential
R34 T75 T74 arg2Of regulating,in
R35 T75 T80 arg1Of regulating,in
R36 T79 T75 arg2Of deacetylases,regulating
R37 T79 T76 arg1Of deacetylases,class
R38 T79 T77 arg1Of deacetylases,II
R39 T79 T78 arg1Of deacetylases,histone
R40 T82 T80 arg2Of B-cells,in
R41 T82 T81 arg1Of B-cells,DT40
R7 T51 T49 arg1Of D,protein
R8 T51 T50 arg1Of D,kinase
R12 T55 T48 arg2Of enzymes,of
R13 T55 T51 arg1Of enzymes,D
R14 T56 T45 arg1Of we,investigate
R16 T57 T44 modOf generated,To
R374 T29 T26 arg1Of enzymes,Protein
R375 T29 T27 arg1Of enzymes,kinase
R376 T29 T28 arg1Of enzymes,D
R377 T29 T30 arg1Of enzymes,are
R378 T29 T31 arg1Of enzymes,dispensable
R379 T31 T30 arg2Of dispensable,are
R380 T31 T32 arg1Of dispensable,for
R381 T33 T34 arg1Of proliferation,","
R382 T34 T36 arg1Of ",",and
R383 T35 T34 arg2Of survival,","
R384 T36 T32 arg2Of and,for
R385 T36 T41 arg1Of and,in
R386 T40 T36 arg2Of activity,and
R387 T40 T37 arg1Of activity,antigen
R388 T40 T38 arg1Of activity,receptor-regulated
R389 T40 T39 arg1Of activity,NFκB
R390 T43 T41 arg2Of B-cells,in
R391 T43 T42 arg1Of B-cells,vertebrate
R392 T45 T44 arg1Of investigate,To
R393 T47 T45 arg2Of importance,investigate
R394 T47 T46 arg1Of importance,the
R395 T47 T48 arg1Of importance,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T212 0-7 NN denotes Protein
T213 8-14 NN denotes kinase
T214 15-16 NNP denotes D
T215 17-24 NNS denotes enzymes
T216 25-28 VBP denotes are
T217 29-40 JJ denotes dispensable
T218 41-44 IN denotes for
T219 45-58 NN denotes proliferation
T220 58-59 , denotes ,
T221 60-68 NN denotes survival
T222 69-72 CC denotes and
T223 73-80 NN denotes antigen
T224 81-99 JJ denotes receptor-regulated
T225 100-104 NN denotes NFκB
T226 105-113 NN denotes activity
T227 114-116 IN denotes in
T228 117-127 JJ denotes vertebrate
T229 128-135 NNPS denotes B-cells
T230 147-149 TO denotes To
T231 150-161 VB denotes investigate
T232 162-165 DT denotes the
T233 166-176 NN denotes importance
T234 177-179 IN denotes of
T235 180-187 NN denotes protein
T236 188-194 NN denotes kinase
T237 195-196 NNP denotes D
T238 197-198 -LRB- denotes (
T239 198-201 NNP denotes PKD
T240 201-202 -RRB- denotes )
T241 203-210 VBZ denotes enzymes
T242 211-213 PRP denotes we
T243 214-223 VBD denotes generated
T244 224-225 DT denotes a
T245 226-234 NNP denotes PKD-null
T246 235-239 NNP denotes DT40
T247 240-252 NNP denotes B-lymphocyte
T248 253-257 NN denotes cell
T249 258-262 NN denotes line
T250 262-263 . denotes .
T251 264-274 RB denotes Previously
T252 275-277 PRP denotes we
T253 278-282 VBP denotes have
T254 283-288 VBN denotes shown
T255 289-293 IN denotes that
T256 294-298 NNS denotes PKDs
T257 299-303 VBP denotes have
T258 304-306 DT denotes an
T259 307-316 JJ denotes essential
T260 317-321 NN denotes role
T261 322-324 IN denotes in
T262 325-335 VBG denotes regulating
T263 336-341 NN denotes class
T264 342-344 NNP denotes II
T265 345-352 NN denotes histone
T266 353-365 NNS denotes deacetylases
T267 366-368 IN denotes in
T268 369-373 NNP denotes DT40
T269 374-381 NNPS denotes B-cells
T270 382-383 NNP denotes [
R204 T241 T231 dobj enzymes,investigate
R205 T242 T243 nsubj we,generated
R206 T243 T241 relcl generated,enzymes
R207 T244 T249 det a,line
R208 T245 T249 compound PKD-null,line
R209 T246 T247 compound DT40,B-lymphocyte
R210 T247 T249 compound B-lymphocyte,line
R211 T248 T249 compound cell,line
R212 T249 T243 dobj line,generated
R213 T250 T216 punct .,are
R214 T251 T254 advmod Previously,shown
R215 T252 T254 nsubj we,shown
R216 T253 T254 aux have,shown
R217 T254 T254 ROOT shown,shown
R218 T255 T257 mark that,have
R219 T256 T257 nsubj PKDs,have
R220 T257 T254 ccomp have,shown
R221 T258 T260 det an,role
R222 T259 T260 amod essential,role
R223 T260 T257 dobj role,have
R224 T261 T260 prep in,role
R225 T262 T261 pcomp regulating,in
R226 T263 T266 compound class,deacetylases
R227 T264 T266 compound II,deacetylases
R228 T265 T266 compound histone,deacetylases
R229 T266 T262 dobj deacetylases,regulating
R230 T267 T262 prep in,regulating
R175 T212 T215 compound Protein,enzymes
R176 T213 T215 compound kinase,enzymes
R177 T214 T215 compound D,enzymes
R178 T215 T216 nsubj enzymes,are
R179 T216 T216 ROOT are,are
R180 T217 T216 acomp dispensable,are
R181 T218 T217 prep for,dispensable
R182 T219 T226 nmod proliferation,activity
R183 T220 T219 punct ",",proliferation
R184 T221 T219 conj survival,proliferation
R185 T222 T221 cc and,survival
R186 T223 T221 conj antigen,survival
R187 T224 T226 amod receptor-regulated,activity
R188 T225 T226 compound NFκB,activity
R189 T226 T218 pobj activity,for
R190 T227 T226 prep in,activity
R191 T228 T229 amod vertebrate,B-cells
R192 T229 T227 pobj B-cells,in
R193 T230 T231 aux To,investigate
R194 T231 T216 advcl investigate,are
R195 T232 T233 det the,importance
R196 T233 T231 dobj importance,investigate
R197 T234 T233 prep of,importance
R198 T235 T234 pobj protein,of
R199 T236 T237 compound kinase,D
R200 T237 T235 appos D,protein
R201 T238 T237 punct (,D
R202 T239 T237 appos PKD,D
R203 T240 T237 punct ),D

UBERON-AE

Id Subject Object Predicate Lexical cue
T9 117-127 http://purl.obolibrary.org/obo/UBERON_3010224 denotes vertebrate

GO-CC

Id Subject Object Predicate Lexical cue
T399 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T400 376-381 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14 0-135 Sentence denotes Protein kinase D enzymes are dispensable for proliferation, survival and antigen receptor-regulated NFκB activity in vertebrate B-cells
T15 147-263 Sentence denotes To investigate the importance of protein kinase D (PKD) enzymes we generated a PKD-null DT40 B-lymphocyte cell line.
T1 0-135 Sentence denotes Protein kinase D enzymes are dispensable for proliferation, survival and antigen receptor-regulated NFκB activity in vertebrate B-cells
T2 138-146 Sentence denotes Abstract
T3 147-263 Sentence denotes To investigate the importance of protein kinase D (PKD) enzymes we generated a PKD-null DT40 B-lymphocyte cell line.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T429 0-24 Protein denotes Protein kinase D enzymes
T430 100-104 Protein denotes NFκB
T431 81-99 Regulation denotes receptor-regulated
T432 180-196 Protein denotes protein kinase D
T433 198-201 Protein denotes PKD
T434 226-229 Protein denotes PKD
T435 294-298 Protein denotes PKDs
T436 336-365 Protein denotes class II histone deacetylases
R362 T430 T431 themeOf NFκB,receptor-regulated