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PMC:1941754 / 7499-8022 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10182 0-1 -LRB- denotes (
T10183 1-2 LS denotes A
T10184 17-21 NN denotes tree
T10185 2-3 -RRB- denotes )
T10186 4-16 JJ denotes Phylogenetic
T10187 22-24 IN denotes of
T10188 25-33 JJ denotes presumed
T10189 46-55 NNS denotes orthologs
T10190 34-38 NN denotes PCH2
T10191 39-45 NN denotes TRIP13
T10192 38-39 HYPH denotes /
T10193 55-56 . denotes .
T10194 56-137 sentence denotes The database sequence accession number of each protein is presented in Table S1.
T10195 57-60 DT denotes The
T10196 89-95 NN denotes number
T10197 61-69 NN denotes database
T10198 70-78 NN denotes sequence
T10199 79-88 NN denotes accession
T10200 115-124 VBN denotes presented
T10201 96-98 IN denotes of
T10202 99-103 DT denotes each
T10203 104-111 NN denotes protein
T10204 112-114 VBZ denotes is
T10205 125-127 IN denotes in
T10206 128-133 NN denotes Table
T10207 134-136 NN denotes S1
T10208 136-137 . denotes .
T10209 137-201 sentence denotes Numbers shown are bootstrap values (see Materials and Methods).
T10210 138-145 NNS denotes Numbers
T10211 152-155 VBP denotes are
T10212 146-151 VBN denotes shown
T10213 156-165 NN denotes bootstrap
T10214 166-172 NNS denotes values
T10215 173-174 -LRB- denotes (
T10216 174-177 VB denotes see
T10217 178-187 NNS denotes Materials
T10218 188-191 CC denotes and
T10219 192-199 NNS denotes Methods
T10220 199-200 -RRB- denotes )
T10221 200-201 . denotes .
T10222 201-386 sentence denotes The clustering was the same regardless of whether the whole entire AA sequence or trimmed sequences (where regions showing little conservation were removed) were used for the analysis.
T10223 202-205 DT denotes The
T10224 206-216 NN denotes clustering
T10225 217-220 VBD denotes was
T10226 221-224 DT denotes the
T10227 225-229 JJ denotes same
T10228 230-240 RB denotes regardless
T10229 241-243 IN denotes of
T10230 244-251 IN denotes whether
T10231 364-368 VBN denotes used
T10232 252-255 DT denotes the
T10233 272-280 NN denotes sequence
T10234 256-261 JJ denotes whole
T10235 262-268 JJ denotes entire
T10236 269-271 NN denotes AA
T10237 281-283 CC denotes or
T10238 284-291 VBN denotes trimmed
T10239 292-301 NNS denotes sequences
T10240 302-303 -LRB- denotes (
T10241 303-308 WRB denotes where
T10242 350-357 VBN denotes removed
T10243 309-316 NNS denotes regions
T10244 317-324 VBG denotes showing
T10245 325-331 JJ denotes little
T10246 332-344 NN denotes conservation
T10247 345-349 VBD denotes were
T10248 357-358 -RRB- denotes )
T10249 359-363 VBD denotes were
T10250 369-372 IN denotes for
T10251 373-376 DT denotes the
T10252 377-385 NN denotes analysis
T10253 385-386 . denotes .
T10254 386-523 sentence denotes Major eukaryotic groups are indicated in color, with deuterostomia in blue, plants in green, protostomia in purple, and fungi in maroon.
T10255 387-392 JJ denotes Major
T10256 404-410 NNS denotes groups
T10257 393-403 JJ denotes eukaryotic
T10258 415-424 VBN denotes indicated
T10259 411-414 VBP denotes are
T10260 425-427 IN denotes in
T10261 428-433 NN denotes color
T10262 433-435 , denotes ,
T10263 435-439 IN denotes with
T10264 454-456 IN denotes in
T10265 440-453 NN denotes deuterostomia
T10266 457-461 NN denotes blue
T10267 461-463 , denotes ,
T10268 463-469 NNS denotes plants
T10269 470-472 IN denotes in
T10270 473-478 NN denotes green
T10271 478-480 , denotes ,
T10272 480-491 NN denotes protostomia
T10273 492-494 IN denotes in
T10274 495-501 NN denotes purple
T10275 501-503 , denotes ,
T10276 503-506 CC denotes and
T10277 507-512 NNS denotes fungi
T10278 513-515 IN denotes in
T10279 516-522 NN denotes maroon
T10280 522-523 . denotes .
R6853 T10182 T10183 punct (,A
R6854 T10183 T10184 meta A,tree
R6855 T10185 T10183 punct ),A
R6856 T10186 T10184 amod Phylogenetic,tree
R6857 T10187 T10184 prep of,tree
R6858 T10188 T10189 amod presumed,orthologs
R6859 T10189 T10187 pobj orthologs,of
R6860 T10190 T10191 compound PCH2,TRIP13
R6861 T10191 T10189 compound TRIP13,orthologs
R6862 T10192 T10191 punct /,TRIP13
R6863 T10193 T10184 punct .,tree
R6864 T10195 T10196 det The,number
R6865 T10196 T10200 nsubjpass number,presented
R6866 T10197 T10198 compound database,sequence
R6867 T10198 T10199 compound sequence,accession
R6868 T10199 T10196 compound accession,number
R6869 T10201 T10196 prep of,number
R6870 T10202 T10203 det each,protein
R6871 T10203 T10201 pobj protein,of
R6872 T10204 T10200 auxpass is,presented
R6873 T10205 T10200 prep in,presented
R6874 T10206 T10207 compound Table,S1
R6875 T10207 T10205 pobj S1,in
R6876 T10208 T10200 punct .,presented
R6877 T10210 T10211 nsubj Numbers,are
R6878 T10212 T10210 acl shown,Numbers
R6879 T10213 T10214 compound bootstrap,values
R6880 T10214 T10211 attr values,are
R6881 T10215 T10216 punct (,see
R6882 T10216 T10211 parataxis see,are
R6883 T10217 T10216 dobj Materials,see
R6884 T10218 T10217 cc and,Materials
R6885 T10219 T10217 conj Methods,Materials
R6886 T10220 T10216 punct ),see
R6887 T10221 T10211 punct .,are
R6888 T10223 T10224 det The,clustering
R6889 T10224 T10225 nsubj clustering,was
R6890 T10226 T10227 det the,same
R6891 T10227 T10225 attr same,was
R6892 T10228 T10225 advmod regardless,was
R6893 T10229 T10228 prep of,regardless
R6894 T10230 T10231 mark whether,used
R6895 T10231 T10229 pcomp used,of
R6896 T10232 T10233 det the,sequence
R6897 T10233 T10231 nsubjpass sequence,used
R6898 T10234 T10235 amod whole,entire
R6899 T10235 T10233 amod entire,sequence
R6900 T10236 T10233 compound AA,sequence
R6901 T10237 T10233 cc or,sequence
R6902 T10238 T10239 amod trimmed,sequences
R6903 T10239 T10233 conj sequences,sequence
R6904 T10240 T10239 punct (,sequences
R6905 T10241 T10242 advmod where,removed
R6906 T10242 T10239 relcl removed,sequences
R6907 T10243 T10242 nsubjpass regions,removed
R6908 T10244 T10243 acl showing,regions
R6909 T10245 T10246 amod little,conservation
R6910 T10246 T10244 dobj conservation,showing
R6911 T10247 T10242 auxpass were,removed
R6912 T10248 T10231 punct ),used
R6913 T10249 T10231 auxpass were,used
R6914 T10250 T10231 prep for,used
R6915 T10251 T10252 det the,analysis
R6916 T10252 T10250 pobj analysis,for
R6917 T10253 T10225 punct .,was
R6918 T10255 T10256 amod Major,groups
R6919 T10256 T10258 nsubjpass groups,indicated
R6920 T10257 T10256 amod eukaryotic,groups
R6921 T10259 T10258 auxpass are,indicated
R6922 T10260 T10258 prep in,indicated
R6923 T10261 T10260 pobj color,in
R6924 T10262 T10258 punct ", ",indicated
R6925 T10263 T10264 mark with,in
R6926 T10264 T10258 advcl in,indicated
R6927 T10265 T10264 nsubj deuterostomia,in
R6928 T10266 T10264 pobj blue,in
R6929 T10267 T10264 punct ", ",in
R6930 T10268 T10269 nsubj plants,in
R6931 T10269 T10264 conj in,in
R6932 T10270 T10269 pobj green,in
R6933 T10271 T10269 punct ", ",in
R6934 T10272 T10273 nsubj protostomia,in
R6935 T10273 T10269 conj in,in
R6936 T10274 T10273 pobj purple,in
R6937 T10275 T10273 punct ", ",in
R6938 T10276 T10273 cc and,in
R6939 T10277 T10278 nsubj fungi,in
R6940 T10278 T10273 conj in,in
R6941 T10279 T10278 pobj maroon,in
R6942 T10280 T10258 punct .,indicated

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9989 34-38 PR:P38126 denotes PCH2
T9990 39-45 PR:000016672 denotes TRIP13
T9991 46-55 SO:0000855 denotes orthologs
T9992 393-403 NCBITaxon:2759 denotes eukaryotic
T9993 440-453 NCBITaxon:33511 denotes deuterostomia
T9994 463-469 NCBITaxon:3193 denotes plants
T9995 480-491 NCBITaxon:33317 denotes protostomia
T9996 507-512 NCBITaxon:4751 denotes fungi

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10073 34-38 PR_EXT:P38126 denotes PCH2
T10074 39-45 PR_EXT:000016672 denotes TRIP13
T10075 46-55 SO_EXT:0000855 denotes orthologs
T10076 70-78 SO_EXT:biological_sequence denotes sequence
T10077 104-111 CHEBI_PR_EXT:protein denotes protein
T10078 269-271 CHEBI_SO_EXT:amino_acid denotes AA
T10079 272-280 SO_EXT:biological_sequence denotes sequence
T10080 292-301 SO_EXT:biological_sequence denotes sequences
T10081 332-344 SO_EXT:biological_conservation_process_or_quality denotes conservation
T10082 393-403 NCBITaxon:2759 denotes eukaryotic
T10083 440-453 NCBITaxon:33511 denotes deuterostomia
T10084 463-469 NCBITaxon:3193 denotes plants
T10085 480-491 NCBITaxon:33317 denotes protostomia
T10086 507-512 NCBITaxon:4751 denotes fungi