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PMC:1941754 / 5677-6002 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1162 0-325 sentence denotes PCH2, encoding a nucleolar-localized AAA-ATPase that was originally identified in an S. cerevisiae genetic screen for mutants that relieve pachytene arrest of asynaptic zip1 mutants [8], was recently determined to be an essential component of the pachytene synapsis (but not DSB repair) checkpoint in yeast and worms [2,12].
T1163 1-5 NN denotes PCH2
T1164 201-211 VBN denotes determined
T1165 5-7 , denotes ,
T1166 7-15 VBG denotes encoding
T1167 16-17 DT denotes a
T1168 42-48 NN denotes ATPase
T1169 18-27 JJ denotes nucleolar
T1170 28-37 VBN denotes localized
T1171 27-28 HYPH denotes -
T1172 38-41 NN denotes AAA
T1173 41-42 HYPH denotes -
T1174 49-53 WDT denotes that
T1175 69-79 VBN denotes identified
T1176 54-57 VBD denotes was
T1177 58-68 RB denotes originally
T1178 80-82 IN denotes in
T1179 83-85 DT denotes an
T1180 108-114 NN denotes screen
T1181 86-88 NNP denotes S.
T1182 89-99 NNP denotes cerevisiae
T1183 100-107 JJ denotes genetic
T1184 115-118 IN denotes for
T1185 119-126 NNS denotes mutants
T1186 127-131 WDT denotes that
T1187 132-139 VBP denotes relieve
T1188 140-149 NN denotes pachytene
T1189 150-156 NN denotes arrest
T1190 157-159 IN denotes of
T1191 160-169 JJ denotes asynaptic
T1192 175-182 NNS denotes mutants
T1193 170-174 NN denotes zip1
T1194 183-184 -LRB- denotes [
T1195 184-185 CD denotes 8
T1196 185-186 -RRB- denotes ]
T1197 186-188 , denotes ,
T1198 188-191 VBD denotes was
T1199 192-200 RB denotes recently
T1200 212-214 TO denotes to
T1201 215-217 VB denotes be
T1202 218-220 DT denotes an
T1203 231-240 NN denotes component
T1204 221-230 JJ denotes essential
T1205 241-243 IN denotes of
T1206 244-247 DT denotes the
T1207 288-298 NN denotes checkpoint
T1208 248-257 NN denotes pachytene
T1209 258-266 NN denotes synapsis
T1210 267-268 -LRB- denotes (
T1211 268-271 CC denotes but
T1212 272-275 RB denotes not
T1213 276-279 NN denotes DSB
T1214 280-286 NN denotes repair
T1215 286-287 -RRB- denotes )
T1216 299-301 IN denotes in
T1217 302-307 NN denotes yeast
T1218 308-311 CC denotes and
T1219 312-317 NNS denotes worms
T1220 318-319 -LRB- denotes [
T1221 321-323 CD denotes 12
T1222 319-320 CD denotes 2
T1223 320-321 , denotes ,
T1224 323-324 -RRB- denotes ]
T1225 324-325 . denotes .
R716 T1163 T1164 nsubjpass PCH2,determined
R717 T1165 T1163 punct ", ",PCH2
R718 T1166 T1163 acl encoding,PCH2
R719 T1167 T1168 det a,ATPase
R720 T1168 T1166 dobj ATPase,encoding
R721 T1169 T1170 amod nucleolar,localized
R722 T1170 T1168 amod localized,ATPase
R723 T1171 T1170 punct -,localized
R724 T1172 T1168 compound AAA,ATPase
R725 T1173 T1168 punct -,ATPase
R726 T1174 T1175 dep that,identified
R727 T1175 T1166 ccomp identified,encoding
R728 T1176 T1175 auxpass was,identified
R729 T1177 T1175 advmod originally,identified
R730 T1178 T1175 prep in,identified
R731 T1179 T1180 det an,screen
R732 T1180 T1178 pobj screen,in
R733 T1181 T1182 nmod S.,cerevisiae
R734 T1182 T1180 nmod cerevisiae,screen
R735 T1183 T1180 amod genetic,screen
R736 T1184 T1175 prep for,identified
R737 T1185 T1184 pobj mutants,for
R738 T1186 T1187 dep that,relieve
R739 T1187 T1185 relcl relieve,mutants
R740 T1188 T1189 compound pachytene,arrest
R741 T1189 T1187 dobj arrest,relieve
R742 T1190 T1189 prep of,arrest
R743 T1191 T1192 amod asynaptic,mutants
R744 T1192 T1190 pobj mutants,of
R745 T1193 T1192 compound zip1,mutants
R746 T1194 T1195 punct [,8
R747 T1195 T1175 parataxis 8,identified
R748 T1196 T1195 punct ],8
R749 T1197 T1164 punct ", ",determined
R750 T1198 T1164 auxpass was,determined
R751 T1199 T1164 advmod recently,determined
R752 T1200 T1201 aux to,be
R753 T1201 T1164 xcomp be,determined
R754 T1202 T1203 det an,component
R755 T1203 T1201 attr component,be
R756 T1204 T1203 amod essential,component
R757 T1205 T1203 prep of,component
R758 T1206 T1207 det the,checkpoint
R759 T1207 T1205 pobj checkpoint,of
R760 T1208 T1209 nmod pachytene,synapsis
R761 T1209 T1207 nmod synapsis,checkpoint
R762 T1210 T1209 punct (,synapsis
R763 T1211 T1209 cc but,synapsis
R764 T1212 T1211 neg not,but
R765 T1213 T1214 compound DSB,repair
R766 T1214 T1209 conj repair,synapsis
R767 T1215 T1207 punct ),checkpoint
R768 T1216 T1207 prep in,checkpoint
R769 T1217 T1216 pobj yeast,in
R770 T1218 T1217 cc and,yeast
R771 T1219 T1217 conj worms,yeast
R772 T1220 T1221 punct [,12
R773 T1221 T1164 parataxis 12,determined
R774 T1222 T1221 nummod 2,12
R775 T1223 T1221 punct ",",12
R776 T1224 T1221 punct ],12
R777 T1225 T1164 punct .,determined

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T479 1-5 PR:P38126 denotes PCH2
T480 18-27 GO:0005730 denotes nucleolar
T481 86-99 NCBITaxon:4932 denotes S. cerevisiae
T482 100-107 SO:0000704 denotes genetic
T483 140-149 GO:0000239 denotes pachytene
T484 161-169 GO:0007129 denotes synaptic
T485 170-174 PR:P31111 denotes zip1
T486 248-257 _FRAGMENT denotes pachytene
T487 288-298 GO:0051598 denotes checkpoint
T488 258-266 GO:0007129 denotes synapsis
T489 276-286 GO:0006302 denotes DSB repair
R247 T487 T486 _lexicallyChainedTo checkpoint,pachytene

2_test

Id Subject Object Predicate Lexical cue
17696610-10319812-85497890 184-185 10319812 denotes 8
17696610-16339446-85497891 319-320 16339446 denotes 2
17696610-17174924-85497892 321-323 17174924 denotes 12
T47522 184-185 10319812 denotes 8
T13369 319-320 16339446 denotes 2
T3744 321-323 17174924 denotes 12

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T625 1-5 PR_EXT:P38126 denotes PCH2
T626 7-15 SO_EXT:sequence_coding_function denotes encoding
T627 18-27 GO:0005730 denotes nucleolar
T628 28-37 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T629 42-48 GO_EXT:0016887 denotes ATPase
T630 86-99 NCBITaxon:4932 denotes S. cerevisiae
T631 100-107 SO_EXT:0000704 denotes genetic
T632 119-126 SO_EXT:sequence_altered_entity denotes mutants
T633 140-149 GO:0000239 denotes pachytene
T634 161-169 GO:0007129 denotes synaptic
T635 170-174 PR_EXT:P31111 denotes zip1
T636 175-182 SO_EXT:sequence_altered_entity denotes mutants
T637 248-257 _FRAGMENT denotes pachytene
T638 288-298 GO:0051598 denotes checkpoint
T639 258-266 GO:0007129 denotes synapsis
T640 276-286 GO:0006302 denotes DSB repair
T641 302-307 NCBITaxon_EXT:yeast denotes yeast
T642 312-317 NCBITaxon_EXT:worm denotes worms
R249 T638 T637 _lexicallyChainedTo checkpoint,pachytene