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PMC:1941754 / 43336-44198 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T9325 0-14 NN denotes Immunolabeling
T9326 63-72 VBN denotes performed
T9327 15-17 IN denotes of
T9328 18-25 NN denotes surface
T9329 33-46 NNS denotes spermatocytes
T9330 25-26 HYPH denotes -
T9331 26-32 NN denotes spread
T9332 47-50 CC denotes and
T9333 51-58 NNS denotes oocytes
T9334 59-62 VBD denotes was
T9335 73-75 IN denotes as
T9336 76-85 VBN denotes described
T9337 86-87 -LRB- denotes [
T9338 90-92 CD denotes 62
T9339 87-89 CD denotes 39
T9340 89-90 , denotes ,
T9341 92-93 -RRB- denotes ]
T9342 93-94 . denotes .
T9343 94-470 sentence denotes To reach conclusions on the pattern of staining for various proteins, 30 (unless otherwise indicated) well-spread nuclei of particular meiotic stages were first identified under the fluorescent microscope on the basis of SYCP3 or STAG3 staining, then imaged at both appropriate wavelengths to determine the pattern of second proteins with focal patterns such as RAD51 or RPA.
T9344 95-97 TO denotes To
T9345 98-103 VB denotes reach
T9346 256-266 VBN denotes identified
T9347 104-115 NNS denotes conclusions
T9348 116-118 IN denotes on
T9349 119-122 DT denotes the
T9350 123-130 NN denotes pattern
T9351 131-133 IN denotes of
T9352 134-142 NN denotes staining
T9353 143-146 IN denotes for
T9354 147-154 JJ denotes various
T9355 155-163 NN denotes proteins
T9356 163-165 , denotes ,
T9357 165-167 CD denotes 30
T9358 209-215 NNS denotes nuclei
T9359 168-169 -LRB- denotes (
T9360 186-195 VBN denotes indicated
T9361 169-175 IN denotes unless
T9362 176-185 RB denotes otherwise
T9363 195-196 -RRB- denotes )
T9364 197-201 RB denotes well
T9365 202-208 VBN denotes spread
T9366 201-202 HYPH denotes -
T9367 216-218 IN denotes of
T9368 219-229 JJ denotes particular
T9369 238-244 NNS denotes stages
T9370 230-237 JJ denotes meiotic
T9371 245-249 VBD denotes were
T9372 250-255 RB denotes first
T9373 267-272 IN denotes under
T9374 273-276 DT denotes the
T9375 289-299 NN denotes microscope
T9376 277-288 JJ denotes fluorescent
T9377 300-302 IN denotes on
T9378 303-306 DT denotes the
T9379 307-312 NN denotes basis
T9380 313-315 IN denotes of
T9381 316-321 NN denotes SYCP3
T9382 331-339 NN denotes staining
T9383 322-324 CC denotes or
T9384 325-330 NN denotes STAG3
T9385 339-341 , denotes ,
T9386 341-345 RB denotes then
T9387 346-352 VBN denotes imaged
T9388 353-355 IN denotes at
T9389 356-360 DT denotes both
T9390 373-384 NNS denotes wavelengths
T9391 361-372 JJ denotes appropriate
T9392 385-387 TO denotes to
T9393 388-397 VB denotes determine
T9394 398-401 DT denotes the
T9395 402-409 NN denotes pattern
T9396 410-412 IN denotes of
T9397 413-419 JJ denotes second
T9398 420-428 NN denotes proteins
T9399 429-433 IN denotes with
T9400 434-439 JJ denotes focal
T9401 440-448 NNS denotes patterns
T9402 449-453 JJ denotes such
T9403 454-456 IN denotes as
T9404 457-462 NN denotes RAD51
T9405 463-465 CC denotes or
T9406 466-469 NN denotes RPA
T9407 469-470 . denotes .
T9408 470-579 sentence denotes Unless otherwise indicated, the panels shown in the figures were the exclusive or predominant patterns seen.
T9409 471-477 IN denotes Unless
T9410 488-497 VBN denotes indicated
T9411 478-487 RB denotes otherwise
T9412 531-535 VBD denotes were
T9413 497-499 , denotes ,
T9414 499-502 DT denotes the
T9415 503-509 NNS denotes panels
T9416 510-515 VBN denotes shown
T9417 516-518 IN denotes in
T9418 519-522 DT denotes the
T9419 523-530 NNS denotes figures
T9420 536-539 DT denotes the
T9421 565-573 NNS denotes patterns
T9422 540-549 JJ denotes exclusive
T9423 550-552 CC denotes or
T9424 553-564 JJ denotes predominant
T9425 574-578 VBN denotes seen
T9426 578-579 . denotes .
T9427 579-742 sentence denotes The exception for this approach was in the case of staining for MLH1 or MLH3 plus RAD51 (in which case SYCP3 or STAG3 was not available to find chromosome cores).
T9428 580-583 DT denotes The
T9429 584-593 NN denotes exception
T9430 612-615 VBD denotes was
T9431 594-597 IN denotes for
T9432 598-602 DT denotes this
T9433 603-611 NN denotes approach
T9434 616-618 IN denotes in
T9435 619-622 DT denotes the
T9436 623-627 NN denotes case
T9437 628-630 IN denotes of
T9438 631-639 VBG denotes staining
T9439 640-643 IN denotes for
T9440 644-648 NN denotes MLH1
T9441 649-651 CC denotes or
T9442 652-656 NN denotes MLH3
T9443 657-661 CC denotes plus
T9444 662-667 NN denotes RAD51
T9445 668-669 -LRB- denotes (
T9446 669-671 IN denotes in
T9447 698-701 VBD denotes was
T9448 672-677 WDT denotes which
T9449 678-682 NN denotes case
T9450 683-688 NN denotes SYCP3
T9451 689-691 CC denotes or
T9452 692-697 NN denotes STAG3
T9453 702-705 RB denotes not
T9454 706-715 JJ denotes available
T9455 716-718 TO denotes to
T9456 719-723 VB denotes find
T9457 724-734 NN denotes chromosome
T9458 735-740 NNS denotes cores
T9459 740-741 -RRB- denotes )
T9460 741-742 . denotes .
T9461 742-862 sentence denotes Nuclei in this situation were identified first by MLH1/3 foci clustering, then imaged for both fluorescent wavelengths.
T9462 743-749 NNS denotes Nuclei
T9463 773-783 VBN denotes identified
T9464 750-752 IN denotes in
T9465 753-757 DT denotes this
T9466 758-767 NN denotes situation
T9467 768-772 VBD denotes were
T9468 784-789 RB denotes first
T9469 790-792 IN denotes by
T9470 793-797 NN denotes MLH1
T9471 800-804 NNS denotes foci
T9472 797-798 HYPH denotes /
T9473 798-799 CD denotes 3
T9474 805-815 VBG denotes clustering
T9475 815-817 , denotes ,
T9476 817-821 RB denotes then
T9477 822-828 VBN denotes imaged
T9478 829-832 IN denotes for
T9479 833-837 DT denotes both
T9480 850-861 NNS denotes wavelengths
T9481 838-849 JJ denotes fluorescent
T9482 861-862 . denotes .
R6261 T9325 T9326 nsubjpass Immunolabeling,performed
R6262 T9327 T9325 prep of,Immunolabeling
R6263 T9328 T9329 compound surface,spermatocytes
R6264 T9329 T9327 pobj spermatocytes,of
R6265 T9330 T9329 punct -,spermatocytes
R6266 T9331 T9329 compound spread,spermatocytes
R6267 T9332 T9329 cc and,spermatocytes
R6268 T9333 T9329 conj oocytes,spermatocytes
R6269 T9334 T9326 auxpass was,performed
R6270 T9335 T9336 mark as,described
R6271 T9336 T9326 advcl described,performed
R6272 T9337 T9338 punct [,62
R6273 T9338 T9326 parataxis 62,performed
R6274 T9339 T9338 nummod 39,62
R6275 T9340 T9338 punct ",",62
R6276 T9341 T9338 punct ],62
R6277 T9342 T9326 punct .,performed
R6278 T9344 T9345 aux To,reach
R6279 T9345 T9346 advcl reach,identified
R6280 T9347 T9345 dobj conclusions,reach
R6281 T9348 T9347 prep on,conclusions
R6282 T9349 T9350 det the,pattern
R6283 T9350 T9348 pobj pattern,on
R6284 T9351 T9350 prep of,pattern
R6285 T9352 T9351 pobj staining,of
R6286 T9353 T9350 prep for,pattern
R6287 T9354 T9355 amod various,proteins
R6288 T9355 T9353 pobj proteins,for
R6289 T9356 T9346 punct ", ",identified
R6290 T9357 T9358 nummod 30,nuclei
R6291 T9358 T9346 nsubjpass nuclei,identified
R6292 T9359 T9360 punct (,indicated
R6293 T9360 T9358 parataxis indicated,nuclei
R6294 T9361 T9360 mark unless,indicated
R6295 T9362 T9360 advmod otherwise,indicated
R6296 T9363 T9360 punct ),indicated
R6297 T9364 T9365 advmod well,spread
R6298 T9365 T9358 amod spread,nuclei
R6299 T9366 T9365 punct -,spread
R6300 T9367 T9358 prep of,nuclei
R6301 T9368 T9369 amod particular,stages
R6302 T9369 T9367 pobj stages,of
R6303 T9370 T9369 amod meiotic,stages
R6304 T9371 T9346 auxpass were,identified
R6305 T9372 T9346 advmod first,identified
R6306 T9373 T9346 prep under,identified
R6307 T9374 T9375 det the,microscope
R6308 T9375 T9373 pobj microscope,under
R6309 T9376 T9375 amod fluorescent,microscope
R6310 T9377 T9346 prep on,identified
R6311 T9378 T9379 det the,basis
R6312 T9379 T9377 pobj basis,on
R6313 T9380 T9379 prep of,basis
R6314 T9381 T9382 nmod SYCP3,staining
R6315 T9382 T9380 pobj staining,of
R6316 T9383 T9381 cc or,SYCP3
R6317 T9384 T9381 conj STAG3,SYCP3
R6318 T9385 T9346 punct ", ",identified
R6319 T9386 T9387 advmod then,imaged
R6320 T9387 T9346 dep imaged,identified
R6321 T9388 T9387 prep at,imaged
R6322 T9389 T9390 det both,wavelengths
R6323 T9390 T9388 pobj wavelengths,at
R6324 T9391 T9390 amod appropriate,wavelengths
R6325 T9392 T9393 aux to,determine
R6326 T9393 T9387 advcl determine,imaged
R6327 T9394 T9395 det the,pattern
R6328 T9395 T9393 dobj pattern,determine
R6329 T9396 T9395 prep of,pattern
R6330 T9397 T9398 amod second,proteins
R6331 T9398 T9396 pobj proteins,of
R6332 T9399 T9393 prep with,determine
R6333 T9400 T9401 amod focal,patterns
R6334 T9401 T9399 pobj patterns,with
R6335 T9402 T9403 amod such,as
R6336 T9403 T9401 prep as,patterns
R6337 T9404 T9403 pobj RAD51,as
R6338 T9405 T9404 cc or,RAD51
R6339 T9406 T9404 conj RPA,RAD51
R6340 T9407 T9346 punct .,identified
R6341 T9409 T9410 mark Unless,indicated
R6342 T9410 T9412 advcl indicated,were
R6343 T9411 T9410 advmod otherwise,indicated
R6344 T9413 T9412 punct ", ",were
R6345 T9414 T9415 det the,panels
R6346 T9415 T9412 nsubj panels,were
R6347 T9416 T9415 acl shown,panels
R6348 T9417 T9416 prep in,shown
R6349 T9418 T9419 det the,figures
R6350 T9419 T9417 pobj figures,in
R6351 T9420 T9421 det the,patterns
R6352 T9421 T9412 attr patterns,were
R6353 T9422 T9421 amod exclusive,patterns
R6354 T9423 T9422 cc or,exclusive
R6355 T9424 T9422 conj predominant,exclusive
R6356 T9425 T9421 acl seen,patterns
R6357 T9426 T9412 punct .,were
R6358 T9428 T9429 det The,exception
R6359 T9429 T9430 nsubj exception,was
R6360 T9431 T9429 prep for,exception
R6361 T9432 T9433 det this,approach
R6362 T9433 T9431 pobj approach,for
R6363 T9434 T9430 prep in,was
R6364 T9435 T9436 det the,case
R6365 T9436 T9434 pobj case,in
R6366 T9437 T9436 prep of,case
R6367 T9438 T9437 pcomp staining,of
R6368 T9439 T9438 prep for,staining
R6369 T9440 T9439 pobj MLH1,for
R6370 T9441 T9440 cc or,MLH1
R6371 T9442 T9440 conj MLH3,MLH1
R6372 T9443 T9440 cc plus,MLH1
R6373 T9444 T9440 conj RAD51,MLH1
R6374 T9445 T9444 punct (,RAD51
R6375 T9446 T9447 prep in,was
R6376 T9447 T9444 advcl was,RAD51
R6377 T9448 T9449 det which,case
R6378 T9449 T9446 pcomp case,in
R6379 T9450 T9447 nsubj SYCP3,was
R6380 T9451 T9450 cc or,SYCP3
R6381 T9452 T9450 conj STAG3,SYCP3
R6382 T9453 T9447 neg not,was
R6383 T9454 T9447 acomp available,was
R6384 T9455 T9456 aux to,find
R6385 T9456 T9447 advcl find,was
R6386 T9457 T9458 compound chromosome,cores
R6387 T9458 T9456 dobj cores,find
R6388 T9459 T9430 punct ),was
R6389 T9460 T9430 punct .,was
R6390 T9462 T9463 nsubjpass Nuclei,identified
R6391 T9464 T9462 prep in,Nuclei
R6392 T9465 T9466 det this,situation
R6393 T9466 T9464 pobj situation,in
R6394 T9467 T9463 auxpass were,identified
R6395 T9468 T9463 advmod first,identified
R6396 T9469 T9463 agent by,identified
R6397 T9470 T9471 nmod MLH1,foci
R6398 T9471 T9469 pobj foci,by
R6399 T9472 T9470 punct /,MLH1
R6400 T9473 T9470 nummod 3,MLH1
R6401 T9474 T9471 amod clustering,foci
R6402 T9475 T9463 punct ", ",identified
R6403 T9476 T9477 advmod then,imaged
R6404 T9477 T9463 dep imaged,identified
R6405 T9478 T9477 prep for,imaged
R6406 T9479 T9480 det both,wavelengths
R6407 T9480 T9478 pobj wavelengths,for
R6408 T9481 T9480 amod fluorescent,wavelengths
R6409 T9482 T9463 punct .,identified

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9219 33-46 CL:0000017 denotes spermatocytes
T9220 51-58 CL:0000023 denotes oocytes
T9221 209-215 GO:0005634 denotes nuclei
T9222 230-244 GO:0098762 denotes meiotic stages
T9223 316-321 PR:000015865 denotes SYCP3
T9224 325-330 PR:000015706 denotes STAG3
T9225 457-462 PR:000013672 denotes RAD51
T9226 466-469 GO:0005662 denotes RPA
T9227 644-648 PR:000010442 denotes MLH1
T9228 652-656 PR:000010443 denotes MLH3
T9229 662-667 PR:000013672 denotes RAD51
T9230 683-688 PR:000015865 denotes SYCP3
T9231 692-697 PR:000015706 denotes STAG3
T9232 743-749 GO:0005634 denotes Nuclei
T9233 793-797 PR:000010442 denotes MLH1

2_test

Id Subject Object Predicate Lexical cue
17696610-15515002-85497959 87-89 15515002 denotes 39
17696610-14769957-85497960 90-92 14769957 denotes 62
T23181 87-89 15515002 denotes 39
T9507 90-92 14769957 denotes 62

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9268 33-46 CL:0000017 denotes spermatocytes
T9269 51-58 CL:0000023 denotes oocytes
T9270 155-163 CHEBI_PR_EXT:protein denotes proteins
T9271 209-215 GO:0005634 denotes nuclei
T9272 230-244 GO:0098762 denotes meiotic stages
T9273 316-321 PR_EXT:000015865 denotes SYCP3
T9274 325-330 PR_EXT:000015706 denotes STAG3
T9275 420-428 CHEBI_PR_EXT:protein denotes proteins
T9276 457-462 PR_EXT:000013672 denotes RAD51
T9277 466-469 GO:0005662 denotes RPA
T9278 644-648 PR_EXT:000010442 denotes MLH1
T9279 652-656 PR_EXT:000010443 denotes MLH3
T9280 662-667 PR_EXT:000013672 denotes RAD51
T9281 683-688 PR_EXT:000015865 denotes SYCP3
T9282 692-697 PR_EXT:000015706 denotes STAG3
T9283 724-734 GO_SO_EXT:chromosome denotes chromosome
T9284 743-749 GO:0005634 denotes Nuclei
T9285 793-797 PR_EXT:000010442 denotes MLH1