> top > docs > PMC:1941754 > spans > 3744-4750 > annotations

PMC:1941754 / 3744-4750 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T796 0-7 NNS denotes Defects
T797 29-37 VB denotes preclude
T798 8-10 IN denotes in
T799 11-24 NN denotes recombination
T800 25-28 MD denotes can
T801 38-48 JJ denotes homologous
T802 60-67 NN denotes pairing
T803 49-59 NN denotes chromosome
T804 67-69 , denotes ,
T805 69-74 VBP denotes leave
T806 75-85 JJ denotes unrepaired
T807 97-103 NNS denotes breaks
T808 86-96 NN denotes chromosome
T809 103-105 , denotes ,
T810 105-108 CC denotes and
T811 109-114 VBP denotes cause
T812 115-125 NN denotes aneuploidy
T813 126-128 IN denotes by
T814 129-139 VBG denotes abrogating
T815 140-148 VBG denotes crossing
T816 149-153 RP denotes over
T817 153-154 . denotes .
T818 154-308 sentence denotes To avoid such deleterious outcomes, surveillance systems (“checkpoints”) exist to sense meiotic errors and eliminate cells containing unresolved defects.
T819 155-157 TO denotes To
T820 158-163 VB denotes avoid
T821 228-233 VBP denotes exist
T822 164-168 JJ denotes such
T823 181-189 NNS denotes outcomes
T824 169-180 JJ denotes deleterious
T825 189-191 , denotes ,
T826 191-203 NN denotes surveillance
T827 204-211 NNS denotes systems
T828 212-213 -LRB- denotes (
T829 213-214 `` denotes “
T830 214-225 NNS denotes checkpoints
T831 225-226 '' denotes ”
T832 226-227 -RRB- denotes )
T833 234-236 TO denotes to
T834 237-242 VB denotes sense
T835 243-250 JJ denotes meiotic
T836 251-257 NNS denotes errors
T837 258-261 CC denotes and
T838 262-271 VB denotes eliminate
T839 272-277 NNS denotes cells
T840 278-288 VBG denotes containing
T841 289-299 JJ denotes unresolved
T842 300-307 NNS denotes defects
T843 307-308 . denotes .
T844 308-541 sentence denotes In many organisms, including S. cerevisiae, Drosophila melanogaster, C. elegans, and mice [1–4], meiocytes with defects in recombination and/or chromosome synapsis trigger meiotic arrest in the pachytene stage of meiotic prophase I.
T845 309-311 IN denotes In
T846 473-480 VBP denotes trigger
T847 312-316 JJ denotes many
T848 317-326 NNS denotes organisms
T849 326-328 , denotes ,
T850 328-337 VBG denotes including
T851 338-340 NNP denotes S.
T852 341-351 NNP denotes cerevisiae
T853 351-353 , denotes ,
T854 353-363 NNP denotes Drosophila
T855 364-376 NNP denotes melanogaster
T856 376-378 , denotes ,
T857 378-380 NNP denotes C.
T858 381-388 NNP denotes elegans
T859 388-390 , denotes ,
T860 390-393 CC denotes and
T861 394-398 NNS denotes mice
T862 399-400 -LRB- denotes [
T863 400-401 CD denotes 1
T864 401-402 SYM denotes –
T865 402-403 CD denotes 4
T866 403-404 -RRB- denotes ]
T867 404-406 , denotes ,
T868 406-415 NNS denotes meiocytes
T869 416-420 IN denotes with
T870 421-428 NNS denotes defects
T871 429-431 IN denotes in
T872 432-445 NN denotes recombination
T873 446-449 CC denotes and
T874 449-450 HYPH denotes /
T875 450-452 CC denotes or
T876 453-463 NN denotes chromosome
T877 464-472 NN denotes synapsis
T878 481-488 JJ denotes meiotic
T879 489-495 NN denotes arrest
T880 496-498 IN denotes in
T881 499-502 DT denotes the
T882 513-518 NN denotes stage
T883 503-512 NN denotes pachytene
T884 519-521 IN denotes of
T885 522-529 JJ denotes meiotic
T886 530-538 NN denotes prophase
T887 539-540 CD denotes I
T888 540-541 . denotes .
T889 541-638 sentence denotes This response to meiotic defects is referred to as the “pachytene checkpoint” (reviewed in [5]).
T890 542-546 DT denotes This
T891 547-555 NN denotes response
T892 578-586 VBN denotes referred
T893 556-558 IN denotes to
T894 559-566 JJ denotes meiotic
T895 567-574 NNS denotes defects
T896 575-577 VBZ denotes is
T897 587-589 IN denotes to
T898 590-592 IN denotes as
T899 593-596 DT denotes the
T900 608-618 NN denotes checkpoint
T901 597-598 `` denotes “
T902 598-607 NN denotes pachytene
T903 618-619 NN denotes ”
T904 620-621 -LRB- denotes (
T905 621-629 VBN denotes reviewed
T906 630-632 IN denotes in
T907 633-634 -LRB- denotes [
T908 634-635 CD denotes 5
T909 635-636 -RRB- denotes ]
T910 636-637 -RRB- denotes )
T911 637-638 . denotes .
T912 638-757 sentence denotes Genetic experiments in S. cerevisiae have identified elements of the pachytene checkpoint machinery (reviewed in [5]).
T913 639-646 JJ denotes Genetic
T914 647-658 NNS denotes experiments
T915 681-691 VBN denotes identified
T916 659-661 IN denotes in
T917 662-664 NNP denotes S.
T918 665-675 NNP denotes cerevisiae
T919 676-680 VBP denotes have
T920 692-700 NNS denotes elements
T921 701-703 IN denotes of
T922 704-707 DT denotes the
T923 729-738 NN denotes machinery
T924 708-717 NN denotes pachytene
T925 718-728 NN denotes checkpoint
T926 739-740 -LRB- denotes (
T927 740-748 VBN denotes reviewed
T928 749-751 IN denotes in
T929 752-753 -LRB- denotes [
T930 753-754 CD denotes 5
T931 754-755 -RRB- denotes ]
T932 755-756 -RRB- denotes )
T933 756-757 . denotes .
T934 757-886 sentence denotes In addition to meiosis-specific proteins, these include factors that play roles in DNA damage signaling in mitotic cells [6–10].
T935 758-760 IN denotes In
T936 806-813 VBP denotes include
T937 761-769 NN denotes addition
T938 770-772 IN denotes to
T939 773-780 NN denotes meiosis
T940 781-789 JJ denotes specific
T941 780-781 HYPH denotes -
T942 790-798 NN denotes proteins
T943 798-800 , denotes ,
T944 800-805 DT denotes these
T945 814-821 NNS denotes factors
T946 822-826 WDT denotes that
T947 827-831 VBP denotes play
T948 832-837 NNS denotes roles
T949 838-840 IN denotes in
T950 841-844 NN denotes DNA
T951 845-851 NN denotes damage
T952 852-861 NN denotes signaling
T953 862-864 IN denotes in
T954 865-872 JJ denotes mitotic
T955 873-878 NNS denotes cells
T956 879-880 -LRB- denotes [
T957 880-881 CD denotes 6
T958 881-882 SYM denotes –
T959 882-884 CD denotes 10
T960 884-885 -RRB- denotes ]
T961 885-886 . denotes .
T962 886-1006 sentence denotes Arabidopsis thaliana does not appear to have a pachytene checkpoint akin to that in yeast [11], nor do male Drosophila.
T963 887-898 NNP denotes Arabidopsis
T964 899-907 NNP denotes thaliana
T965 917-923 VB denotes appear
T966 908-912 VBZ denotes does
T967 913-916 RB denotes not
T968 924-926 TO denotes to
T969 927-931 VB denotes have
T970 932-933 DT denotes a
T971 944-954 NN denotes checkpoint
T972 934-943 NN denotes pachytene
T973 955-959 JJ denotes akin
T974 960-962 IN denotes to
T975 963-967 DT denotes that
T976 968-970 IN denotes in
T977 971-976 NN denotes yeast
T978 977-978 -LRB- denotes [
T979 978-980 CD denotes 11
T980 980-981 -RRB- denotes ]
T981 981-983 , denotes ,
T982 983-986 CC denotes nor
T983 987-989 VB denotes do
T984 990-994 JJ denotes male
T985 995-1005 NNP denotes Drosophila
T986 1005-1006 . denotes .
R371 T796 T797 nsubj Defects,preclude
R372 T798 T796 prep in,Defects
R373 T799 T798 pobj recombination,in
R374 T800 T797 aux can,preclude
R375 T801 T802 amod homologous,pairing
R376 T802 T797 dobj pairing,preclude
R377 T803 T802 compound chromosome,pairing
R378 T804 T797 punct ", ",preclude
R379 T805 T797 conj leave,preclude
R380 T806 T807 amod unrepaired,breaks
R381 T807 T805 dobj breaks,leave
R382 T808 T807 compound chromosome,breaks
R383 T809 T805 punct ", ",leave
R384 T810 T805 cc and,leave
R385 T811 T805 conj cause,leave
R386 T812 T811 dobj aneuploidy,cause
R387 T813 T811 prep by,cause
R388 T814 T813 pcomp abrogating,by
R389 T815 T814 xcomp crossing,abrogating
R390 T816 T815 prt over,crossing
R391 T817 T797 punct .,preclude
R392 T819 T820 aux To,avoid
R393 T820 T821 advcl avoid,exist
R394 T822 T823 amod such,outcomes
R395 T823 T820 dobj outcomes,avoid
R396 T824 T823 amod deleterious,outcomes
R397 T825 T821 punct ", ",exist
R398 T826 T827 compound surveillance,systems
R399 T827 T821 nsubj systems,exist
R400 T828 T827 punct (,systems
R401 T829 T827 punct “,systems
R402 T830 T827 appos checkpoints,systems
R403 T831 T821 punct ”,exist
R404 T832 T821 punct ),exist
R405 T833 T834 aux to,sense
R406 T834 T821 advcl sense,exist
R407 T835 T836 amod meiotic,errors
R408 T836 T834 dobj errors,sense
R409 T837 T834 cc and,sense
R410 T838 T834 conj eliminate,sense
R411 T839 T838 dobj cells,eliminate
R412 T840 T839 acl containing,cells
R413 T841 T842 amod unresolved,defects
R414 T842 T840 dobj defects,containing
R415 T843 T821 punct .,exist
R416 T845 T846 prep In,trigger
R417 T847 T848 amod many,organisms
R418 T848 T845 pobj organisms,In
R419 T849 T848 punct ", ",organisms
R420 T850 T848 prep including,organisms
R421 T851 T852 compound S.,cerevisiae
R422 T852 T850 pobj cerevisiae,including
R423 T853 T852 punct ", ",cerevisiae
R424 T854 T855 compound Drosophila,melanogaster
R425 T855 T852 conj melanogaster,cerevisiae
R426 T856 T855 punct ", ",melanogaster
R427 T857 T858 compound C.,elegans
R428 T858 T855 conj elegans,melanogaster
R429 T859 T858 punct ", ",elegans
R430 T860 T858 cc and,elegans
R431 T861 T858 conj mice,elegans
R432 T862 T863 punct [,1
R433 T863 T861 parataxis 1,mice
R434 T864 T865 punct –,4
R435 T865 T863 prep 4,1
R436 T866 T863 punct ],1
R437 T867 T846 punct ", ",trigger
R438 T868 T846 nsubj meiocytes,trigger
R439 T869 T868 prep with,meiocytes
R440 T870 T869 pobj defects,with
R441 T871 T870 prep in,defects
R442 T872 T871 pobj recombination,in
R443 T873 T872 cc and,recombination
R444 T874 T873 punct /,and
R445 T875 T873 cc or,and
R446 T876 T877 compound chromosome,synapsis
R447 T877 T872 conj synapsis,recombination
R448 T878 T879 amod meiotic,arrest
R449 T879 T846 dobj arrest,trigger
R450 T880 T846 prep in,trigger
R451 T881 T882 det the,stage
R452 T882 T880 pobj stage,in
R453 T883 T882 compound pachytene,stage
R454 T884 T882 prep of,stage
R455 T885 T886 amod meiotic,prophase
R456 T886 T884 pobj prophase,of
R457 T887 T886 nummod I,prophase
R458 T888 T846 punct .,trigger
R459 T890 T891 det This,response
R460 T891 T892 nsubjpass response,referred
R461 T893 T891 prep to,response
R462 T894 T895 amod meiotic,defects
R463 T895 T893 pobj defects,to
R464 T896 T892 auxpass is,referred
R465 T897 T892 prep to,referred
R466 T898 T892 prep as,referred
R467 T899 T900 det the,checkpoint
R468 T900 T898 pobj checkpoint,as
R469 T901 T900 punct “,checkpoint
R470 T902 T900 compound pachytene,checkpoint
R471 T903 T892 dep ”,referred
R472 T904 T905 punct (,reviewed
R473 T905 T892 parataxis reviewed,referred
R474 T906 T905 prep in,reviewed
R475 T907 T908 punct [,5
R476 T908 T906 pobj 5,in
R477 T909 T908 punct ],5
R478 T910 T905 punct ),reviewed
R479 T911 T892 punct .,referred
R480 T913 T914 amod Genetic,experiments
R481 T914 T915 nsubj experiments,identified
R482 T916 T914 prep in,experiments
R483 T917 T918 compound S.,cerevisiae
R484 T918 T916 pobj cerevisiae,in
R485 T919 T915 aux have,identified
R486 T920 T915 dobj elements,identified
R487 T921 T920 prep of,elements
R488 T922 T923 det the,machinery
R489 T923 T921 pobj machinery,of
R490 T924 T923 compound pachytene,machinery
R491 T925 T923 compound checkpoint,machinery
R492 T926 T927 punct (,reviewed
R493 T927 T915 parataxis reviewed,identified
R494 T928 T927 prep in,reviewed
R495 T929 T930 punct [,5
R496 T930 T928 pobj 5,in
R497 T931 T930 punct ],5
R498 T932 T927 punct ),reviewed
R499 T933 T915 punct .,identified
R500 T935 T936 prep In,include
R501 T937 T935 pobj addition,In
R502 T938 T937 prep to,addition
R503 T939 T940 npadvmod meiosis,specific
R504 T940 T942 amod specific,proteins
R505 T941 T940 punct -,specific
R506 T942 T938 pobj proteins,to
R507 T943 T936 punct ", ",include
R508 T944 T936 nsubj these,include
R509 T945 T936 dobj factors,include
R510 T946 T947 dep that,play
R511 T947 T945 relcl play,factors
R512 T948 T947 dobj roles,play
R513 T949 T947 prep in,play
R514 T950 T951 compound DNA,damage
R515 T951 T952 compound damage,signaling
R516 T952 T949 pobj signaling,in
R517 T953 T952 prep in,signaling
R518 T954 T955 amod mitotic,cells
R519 T955 T953 pobj cells,in
R520 T956 T957 punct [,6
R521 T957 T936 parataxis 6,include
R522 T958 T959 punct –,10
R523 T959 T957 prep 10,6
R524 T960 T957 punct ],6
R525 T961 T936 punct .,include
R526 T963 T964 compound Arabidopsis,thaliana
R527 T964 T965 nsubj thaliana,appear
R528 T966 T965 aux does,appear
R529 T967 T965 neg not,appear
R530 T968 T969 aux to,have
R531 T969 T965 xcomp have,appear
R532 T970 T971 det a,checkpoint
R533 T971 T969 dobj checkpoint,have
R534 T972 T971 compound pachytene,checkpoint
R535 T973 T971 amod akin,checkpoint
R536 T974 T973 prep to,akin
R537 T975 T974 pobj that,to
R538 T976 T975 prep in,that
R539 T977 T976 pobj yeast,in
R540 T978 T979 punct [,11
R541 T979 T969 parataxis 11,have
R542 T980 T979 punct ],11
R543 T981 T965 punct ", ",appear
R544 T982 T965 cc nor,appear
R545 T983 T965 conj do,appear
R546 T984 T985 amod male,Drosophila
R547 T985 T983 nsubj Drosophila,do
R548 T986 T983 punct .,do

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T421 38-67 GO:0007129 denotes homologous chromosome pairing
T422 77-85 GO:0006281 denotes repaired
T423 97-103 MOP:0000780 denotes breaks
T424 140-153 GO:0035825 denotes crossing over
T425 191-203 GO:0065007 denotes surveillance
T426 214-225 GO:0000075 denotes checkpoints
T427 243-250 GO:0007126 denotes meiotic
T428 317-326 NCBITaxon:1 denotes organisms
T429 338-351 NCBITaxon:4932 denotes S. cerevisiae
T430 353-376 NCBITaxon:7227 denotes Drosophila melanogaster
T431 378-388 NCBITaxon:6239 denotes C. elegans
T432 394-398 NCBITaxon:10088 denotes mice
T433 453-472 GO:0007129 denotes chromosome synapsis
T434 481-488 GO:0007126 denotes meiotic
T435 503-512 GO:0000239 denotes pachytene
T436 522-540 GO:0007128 denotes meiotic prophase I
T437 559-566 GO:0007126 denotes meiotic
T438 598-618 GO:0051598 denotes pachytene checkpoint
T439 639-646 SO:0000704 denotes Genetic
T440 662-675 NCBITaxon:4932 denotes S. cerevisiae
T441 708-728 GO:0051598 denotes pachytene checkpoint
T442 773-780 GO:0007126 denotes meiosis
T443 841-861 GO:0042770 denotes DNA damage signaling
T444 865-872 GO:0007067 denotes mitotic
T445 887-907 NCBITaxon:3702 denotes Arabidopsis thaliana
T446 934-954 GO:0051598 denotes pachytene checkpoint
T447 995-1005 NCBITaxon:7215 denotes Drosophila

2_test

Id Subject Object Predicate Lexical cue
17696610-10559962-85497881 400-401 10559962 denotes 1
17696610-16339446-85497881 400-401 16339446 denotes 1
17696610-15338235-85497881 400-401 15338235 denotes 1
17696610-9334324-85497881 400-401 9334324 denotes 1
17696610-10973068-85497882 634-635 10973068 denotes 5
17696610-10973068-85497883 753-754 10973068 denotes 5
17696610-16546077-85497884 880-881 16546077 denotes 6
17696610-8893012-85497884 880-881 8893012 denotes 6
17696610-10319812-85497884 880-881 10319812 denotes 6
17696610-10619027-85497884 880-881 10619027 denotes 6
17696610-16179256-85497884 880-881 16179256 denotes 6
17696610-12456752-85497885 978-980 12456752 denotes 11
T45666 400-401 10559962 denotes 1
T25685 400-401 16339446 denotes 1
T67708 400-401 15338235 denotes 1
T85336 400-401 9334324 denotes 1
T91986 634-635 10973068 denotes 5
T18562 753-754 10973068 denotes 5
T55762 880-881 16546077 denotes 6
T39663 880-881 8893012 denotes 6
T14371 880-881 10319812 denotes 6
T38939 880-881 10619027 denotes 6
T12288 880-881 16179256 denotes 6
T89284 978-980 12456752 denotes 11

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T541 11-24 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T542 38-67 GO:0007129 denotes homologous chromosome pairing
T543 49-59 GO_SO_EXT:chromosome denotes chromosome
T544 77-85 GO:0006281 denotes repaired
T545 86-96 GO_SO_EXT:chromosome denotes chromosome
T546 97-103 MOP:0000780 denotes breaks
T547 115-125 PATO_SO_EXT:aneuploidy denotes aneuploidy
T548 140-153 GO:0035825 denotes crossing over
T549 191-203 GO:0065007 denotes surveillance
T550 214-225 GO:0000075 denotes checkpoints
T551 237-242 GO_EXT:detection_or_sensing_of_stimulus denotes sense
T552 243-250 GO:0007126 denotes meiotic
T553 262-271 GO_EXT:killing denotes eliminate
T554 272-277 CL_GO_EXT:cell denotes cells
T555 317-326 NCBITaxon:1 denotes organisms
T556 338-351 NCBITaxon:4932 denotes S. cerevisiae
T557 353-376 NCBITaxon:7227 denotes Drosophila melanogaster
T558 378-388 NCBITaxon:6239 denotes C. elegans
T559 394-398 NCBITaxon:10088 denotes mice
T560 432-445 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T561 453-463 GO_SO_EXT:chromosome denotes chromosome
T562 453-472 GO:0007129 denotes chromosome synapsis
T563 481-488 GO:0007126 denotes meiotic
T564 503-512 GO:0000239 denotes pachytene
T565 522-540 GO:0007128 denotes meiotic prophase I
T566 547-555 GO_EXT:reaction_or_response denotes response
T567 559-566 GO:0007126 denotes meiotic
T568 598-618 GO:0051598 denotes pachytene checkpoint
T569 639-646 SO_EXT:0000704 denotes Genetic
T570 662-675 NCBITaxon:4932 denotes S. cerevisiae
T571 708-728 GO:0051598 denotes pachytene checkpoint
T572 773-780 GO:0007126 denotes meiosis
T573 790-798 CHEBI_PR_EXT:protein denotes proteins
T574 841-844 CHEBI_SO_EXT:DNA denotes DNA
T575 841-861 GO:0042770 denotes DNA damage signaling
T576 865-872 GO:0007067 denotes mitotic
T577 873-878 CL_GO_EXT:cell denotes cells
T578 887-907 NCBITaxon:3702 denotes Arabidopsis thaliana
T579 934-954 GO:0051598 denotes pachytene checkpoint
T580 971-976 NCBITaxon_EXT:yeast denotes yeast
T581 990-994 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes male
T582 995-1005 NCBITaxon:7215 denotes Drosophila