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PMC:1941754 / 35850-36670 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7521 0-6 NN denotes TRIP13
T7522 22-32 VBN denotes discovered
T7523 7-10 VBD denotes was
T7524 11-21 RB denotes originally
T7525 33-35 TO denotes to
T7526 36-38 VB denotes be
T7527 39-41 DT denotes an
T7528 42-52 NN denotes interactor
T7529 53-57 IN denotes with
T7530 58-61 NN denotes rat
T7531 79-83 NN denotes beta
T7532 62-69 NN denotes thyroid
T7533 70-78 NN denotes receptor
T7534 84-85 -LRB- denotes (
T7535 85-89 NN denotes THRB
T7536 89-90 : denotes ;
T7537 91-92 -LRB- denotes [
T7538 92-94 CD denotes 54
T7539 94-95 -RRB- denotes ]
T7540 95-96 -RRB- denotes )
T7541 96-98 , denotes ,
T7542 98-101 CC denotes but
T7543 102-105 DT denotes the
T7544 106-118 NN denotes relationship
T7545 154-156 VBZ denotes is
T7546 119-126 IN denotes between
T7547 127-131 NN denotes THRB
T7548 132-135 CC denotes and
T7549 136-142 NN denotes TRIP13
T7550 143-145 IN denotes in
T7551 146-153 NN denotes meiosis
T7552 157-164 JJ denotes unknown
T7553 164-165 . denotes .
T7554 165-510 sentence denotes Interestingly, we observed that THRB is distributed diffusely throughout wild-type spermatocyte nuclei but is excluded from the XY (sex) body (unpublished observations), a compartmentalized nuclear domain beginning in pachynema, in which the sex chromosomes become heterochromatinized and transcriptionally silenced in the process of MSCI [55].
T7555 166-179 RB denotes Interestingly
T7556 184-192 VBD denotes observed
T7557 179-181 , denotes ,
T7558 181-183 PRP denotes we
T7559 193-197 IN denotes that
T7560 206-217 VBN denotes distributed
T7561 198-202 NN denotes THRB
T7562 203-205 VBZ denotes is
T7563 218-227 RB denotes diffusely
T7564 228-238 IN denotes throughout
T7565 239-243 JJ denotes wild
T7566 244-248 NN denotes type
T7567 243-244 HYPH denotes -
T7568 262-268 NNS denotes nuclei
T7569 249-261 NN denotes spermatocyte
T7570 269-272 CC denotes but
T7571 273-275 VBZ denotes is
T7572 276-284 VBN denotes excluded
T7573 285-289 IN denotes from
T7574 290-293 DT denotes the
T7575 303-307 NN denotes body
T7576 294-296 NN denotes XY
T7577 297-298 -LRB- denotes (
T7578 298-301 NN denotes sex
T7579 301-302 -RRB- denotes )
T7580 308-309 -LRB- denotes (
T7581 321-333 NNS denotes observations
T7582 309-320 JJ denotes unpublished
T7583 333-334 -RRB- denotes )
T7584 334-336 , denotes ,
T7585 336-337 DT denotes a
T7586 364-370 NN denotes domain
T7587 338-355 VBN denotes compartmentalized
T7588 356-363 JJ denotes nuclear
T7589 371-380 VBG denotes beginning
T7590 381-383 IN denotes in
T7591 384-393 NN denotes pachynema
T7592 393-395 , denotes ,
T7593 395-397 IN denotes in
T7594 424-430 VBP denotes become
T7595 398-403 WDT denotes which
T7596 404-407 DT denotes the
T7597 412-423 NNS denotes chromosomes
T7598 408-411 NN denotes sex
T7599 431-450 VBN denotes heterochromatinized
T7600 451-454 CC denotes and
T7601 455-472 RB denotes transcriptionally
T7602 473-481 VBN denotes silenced
T7603 482-484 IN denotes in
T7604 485-488 DT denotes the
T7605 489-496 NN denotes process
T7606 497-499 IN denotes of
T7607 500-504 NN denotes MSCI
T7608 505-506 -LRB- denotes [
T7609 506-508 CD denotes 55
T7610 508-509 -RRB- denotes ]
T7611 509-510 . denotes .
T7612 510-667 sentence denotes However, the XY body appeared intact in most mutant spermatocytes upon probing with several markers of XY heterochromatinization (unpublished observations).
T7613 511-518 RB denotes However
T7614 532-540 VBD denotes appeared
T7615 518-520 , denotes ,
T7616 520-523 DT denotes the
T7617 527-531 NN denotes body
T7618 524-526 NN denotes XY
T7619 541-547 JJ denotes intact
T7620 548-550 IN denotes in
T7621 551-555 JJS denotes most
T7622 563-576 NNS denotes spermatocytes
T7623 556-562 NN denotes mutant
T7624 577-581 IN denotes upon
T7625 582-589 VBG denotes probing
T7626 590-594 IN denotes with
T7627 595-602 JJ denotes several
T7628 603-610 NNS denotes markers
T7629 611-613 IN denotes of
T7630 614-616 NN denotes XY
T7631 617-639 NN denotes heterochromatinization
T7632 640-641 -LRB- denotes (
T7633 653-665 NNS denotes observations
T7634 641-652 JJ denotes unpublished
T7635 665-666 -RRB- denotes )
T7636 666-667 . denotes .
T7637 667-820 sentence denotes Considering that THRB knockout mice are viable and fertile [56], the functional relationship between TRIP13 and its receptor THRB in meiosis is unclear.
T7638 668-679 VBG denotes Considering
T7639 809-811 VBZ denotes is
T7640 680-684 IN denotes that
T7641 704-707 VBP denotes are
T7642 685-689 NN denotes THRB
T7643 690-698 NN denotes knockout
T7644 699-703 NNS denotes mice
T7645 708-714 JJ denotes viable
T7646 715-718 CC denotes and
T7647 719-726 JJ denotes fertile
T7648 727-728 -LRB- denotes [
T7649 728-730 CD denotes 56
T7650 730-731 -RRB- denotes ]
T7651 731-733 , denotes ,
T7652 733-736 DT denotes the
T7653 748-760 NN denotes relationship
T7654 737-747 JJ denotes functional
T7655 761-768 IN denotes between
T7656 769-775 NN denotes TRIP13
T7657 776-779 CC denotes and
T7658 780-783 PRP$ denotes its
T7659 784-792 NN denotes receptor
T7660 793-797 NN denotes THRB
T7661 798-800 IN denotes in
T7662 801-808 NN denotes meiosis
T7663 812-819 JJ denotes unclear
T7664 819-820 . denotes .
R4893 T7521 T7522 nsubjpass TRIP13,discovered
R4894 T7523 T7522 auxpass was,discovered
R4895 T7524 T7522 advmod originally,discovered
R4896 T7525 T7526 aux to,be
R4897 T7526 T7522 xcomp be,discovered
R4898 T7527 T7528 det an,interactor
R4899 T7528 T7526 attr interactor,be
R4900 T7529 T7528 prep with,interactor
R4901 T7530 T7531 compound rat,beta
R4902 T7531 T7529 pobj beta,with
R4903 T7532 T7531 compound thyroid,beta
R4904 T7533 T7531 compound receptor,beta
R4905 T7534 T7531 punct (,beta
R4906 T7535 T7531 appos THRB,beta
R4907 T7536 T7526 punct ;,be
R4908 T7537 T7538 punct [,54
R4909 T7538 T7526 parataxis 54,be
R4910 T7539 T7538 punct ],54
R4911 T7540 T7522 punct ),discovered
R4912 T7541 T7522 punct ", ",discovered
R4913 T7542 T7522 cc but,discovered
R4914 T7543 T7544 det the,relationship
R4915 T7544 T7545 nsubj relationship,is
R4916 T7545 T7522 conj is,discovered
R4917 T7546 T7544 prep between,relationship
R4918 T7547 T7546 pobj THRB,between
R4919 T7548 T7547 cc and,THRB
R4920 T7549 T7547 conj TRIP13,THRB
R4921 T7550 T7544 prep in,relationship
R4922 T7551 T7550 pobj meiosis,in
R4923 T7552 T7545 acomp unknown,is
R4924 T7553 T7545 punct .,is
R4925 T7555 T7556 advmod Interestingly,observed
R4926 T7557 T7556 punct ", ",observed
R4927 T7558 T7556 nsubj we,observed
R4928 T7559 T7560 mark that,distributed
R4929 T7560 T7556 ccomp distributed,observed
R4930 T7561 T7560 nsubjpass THRB,distributed
R4931 T7562 T7560 auxpass is,distributed
R4932 T7563 T7560 advmod diffusely,distributed
R4933 T7564 T7560 prep throughout,distributed
R4934 T7565 T7566 amod wild,type
R4935 T7566 T7568 compound type,nuclei
R4936 T7567 T7566 punct -,type
R4937 T7568 T7564 pobj nuclei,throughout
R4938 T7569 T7568 compound spermatocyte,nuclei
R4939 T7570 T7560 cc but,distributed
R4940 T7571 T7572 auxpass is,excluded
R4941 T7572 T7560 conj excluded,distributed
R4942 T7573 T7572 prep from,excluded
R4943 T7574 T7575 det the,body
R4944 T7575 T7573 pobj body,from
R4945 T7576 T7575 nmod XY,body
R4946 T7577 T7578 punct (,sex
R4947 T7578 T7575 parataxis sex,body
R4948 T7579 T7578 punct ),sex
R4949 T7580 T7581 punct (,observations
R4950 T7581 T7575 meta observations,body
R4951 T7582 T7581 amod unpublished,observations
R4952 T7583 T7581 punct ),observations
R4953 T7584 T7575 punct ", ",body
R4954 T7585 T7586 det a,domain
R4955 T7586 T7575 appos domain,body
R4956 T7587 T7586 amod compartmentalized,domain
R4957 T7588 T7586 amod nuclear,domain
R4958 T7589 T7586 acl beginning,domain
R4959 T7590 T7589 prep in,beginning
R4960 T7591 T7590 pobj pachynema,in
R4961 T7592 T7591 punct ", ",pachynema
R4962 T7593 T7594 prep in,become
R4963 T7594 T7591 relcl become,pachynema
R4964 T7595 T7593 pobj which,in
R4965 T7596 T7597 det the,chromosomes
R4966 T7597 T7594 nsubj chromosomes,become
R4967 T7598 T7597 compound sex,chromosomes
R4968 T7599 T7594 acomp heterochromatinized,become
R4969 T7600 T7599 cc and,heterochromatinized
R4970 T7601 T7602 advmod transcriptionally,silenced
R4971 T7602 T7599 conj silenced,heterochromatinized
R4972 T7603 T7594 prep in,become
R4973 T7604 T7605 det the,process
R4974 T7605 T7603 pobj process,in
R4975 T7606 T7605 prep of,process
R4976 T7607 T7606 pobj MSCI,of
R4977 T7608 T7609 punct [,55
R4978 T7609 T7572 parataxis 55,excluded
R4979 T7610 T7609 punct ],55
R4980 T7611 T7556 punct .,observed
R4981 T7613 T7614 advmod However,appeared
R4982 T7615 T7614 punct ", ",appeared
R4983 T7616 T7617 det the,body
R4984 T7617 T7614 nsubj body,appeared
R4985 T7618 T7617 compound XY,body
R4986 T7619 T7614 oprd intact,appeared
R4987 T7620 T7614 prep in,appeared
R4988 T7621 T7622 amod most,spermatocytes
R4989 T7622 T7620 pobj spermatocytes,in
R4990 T7623 T7622 compound mutant,spermatocytes
R4991 T7624 T7614 prep upon,appeared
R4992 T7625 T7624 pcomp probing,upon
R4993 T7626 T7625 prep with,probing
R4994 T7627 T7628 amod several,markers
R4995 T7628 T7626 pobj markers,with
R4996 T7629 T7628 prep of,markers
R4997 T7630 T7631 compound XY,heterochromatinization
R4998 T7631 T7629 pobj heterochromatinization,of
R4999 T7632 T7633 punct (,observations
R5000 T7633 T7614 meta observations,appeared
R5001 T7634 T7633 amod unpublished,observations
R5002 T7635 T7633 punct ),observations
R5003 T7636 T7614 punct .,appeared
R5004 T7638 T7639 advcl Considering,is
R5005 T7640 T7641 mark that,are
R5006 T7641 T7638 ccomp are,Considering
R5007 T7642 T7643 compound THRB,knockout
R5008 T7643 T7644 compound knockout,mice
R5009 T7644 T7641 nsubj mice,are
R5010 T7645 T7641 acomp viable,are
R5011 T7646 T7645 cc and,viable
R5012 T7647 T7645 conj fertile,viable
R5013 T7648 T7649 punct [,56
R5014 T7649 T7641 parataxis 56,are
R5015 T7650 T7649 punct ],56
R5016 T7651 T7639 punct ", ",is
R5017 T7652 T7653 det the,relationship
R5018 T7653 T7639 nsubj relationship,is
R5019 T7654 T7653 amod functional,relationship
R5020 T7655 T7653 prep between,relationship
R5021 T7656 T7655 pobj TRIP13,between
R5022 T7657 T7656 cc and,TRIP13
R5023 T7658 T7659 poss its,receptor
R5024 T7659 T7656 conj receptor,TRIP13
R5025 T7660 T7659 appos THRB,receptor
R5026 T7661 T7653 prep in,relationship
R5027 T7662 T7661 pobj meiosis,in
R5028 T7663 T7639 acomp unclear,is
R5029 T7664 T7639 punct .,is

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6121 0-6 PR:000016672 denotes TRIP13
T6122 58-61 NCBITaxon:10114 denotes rat
T6123 62-69 UBERON:0002046 denotes thyroid
T6124 62-83 PR:000016321 denotes thyroid receptor beta
T6125 85-89 PR:000016321 denotes THRB
T6126 127-131 PR:000016321 denotes THRB
T6127 136-142 PR:000016672 denotes TRIP13
T6128 146-153 GO:0007126 denotes meiosis
T6129 198-202 PR:000016321 denotes THRB
T6130 249-261 CL:0000017 denotes spermatocyte
T6131 262-268 GO:0005634 denotes nuclei
T6132 294-296 _FRAGMENT denotes XY
T6133 303-307 GO:0001741 denotes body
T6134 298-301 _FRAGMENT denotes sex
T6135 356-363 GO:0005634 denotes nuclear
T6136 384-393 GO:0000239 denotes pachynema
T6137 408-423 GO:0000803 denotes sex chromosomes
T6138 431-450 GO:0031507 denotes heterochromatinized
T6139 455-481 GO:0006342 denotes transcriptionally silenced
T6140 524-531 GO:0001741 denotes XY body
T6141 563-576 CL:0000017 denotes spermatocytes
T6142 614-616 GO:0001741 denotes XY
T6143 617-639 GO:0031507 denotes heterochromatinization
T6144 685-689 PR:000016321 denotes THRB
T6145 699-703 NCBITaxon:10088 denotes mice
T6146 769-775 PR:000016672 denotes TRIP13
T6147 793-797 PR:000016321 denotes THRB
T6148 801-808 GO:0007126 denotes meiosis
R3994 T6133 T6132 _lexicallyChainedTo body,XY
R3995 T6133 T6134 _lexicallyChainedTo body,sex

2_test

Id Subject Object Predicate Lexical cue
17696610-7776974-85497948 92-94 7776974 denotes 54
17696610-15120994-85497949 506-508 15120994 denotes 55
17696610-8670802-85497950 728-730 8670802 denotes 56
T95418 92-94 7776974 denotes 54
T5715 506-508 15120994 denotes 55
T32476 728-730 8670802 denotes 56

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6430 0-6 PR_EXT:000016672 denotes TRIP13
T6431 58-61 NCBITaxon:10114 denotes rat
T6432 62-69 UBERON:0002046 denotes thyroid
T6433 62-78 GO_EXT:0004887 denotes thyroid receptor
T6434 62-83 PR_EXT:000016321 denotes thyroid receptor beta
T6435 85-89 PR_EXT:000016321 denotes THRB
T6436 127-131 PR_EXT:000016321 denotes THRB
T6437 136-142 PR_EXT:000016672 denotes TRIP13
T6438 146-153 GO:0007126 denotes meiosis
T6439 198-202 PR_EXT:000016321 denotes THRB
T6440 239-248 SO_EXT:wild_type_entity_or_quality denotes wild-type
T6441 249-261 CL:0000017 denotes spermatocyte
T6442 262-268 GO:0005634 denotes nuclei
T6443 294-296 _FRAGMENT denotes XY
T6444 303-307 GO:0001741 denotes body
T6445 298-301 _FRAGMENT denotes sex
T6446 356-363 GO:0005634 denotes nuclear
T6447 384-393 GO:0000239 denotes pachynema
T6448 408-423 GO:0000803 denotes sex chromosomes
T6449 412-423 GO_SO_EXT:chromosome denotes chromosomes
T6450 431-450 GO:0031507 denotes heterochromatinized
T6451 455-481 GO:0006342 denotes transcriptionally silenced
T6452 524-531 GO:0001741 denotes XY body
T6453 556-562 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T6454 563-576 CL:0000017 denotes spermatocytes
T6455 603-610 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T6456 614-616 GO:0001741 denotes XY
T6457 617-639 GO:0031507 denotes heterochromatinization
T6458 685-689 PR_EXT:000016321 denotes THRB
T6459 699-703 NCBITaxon:10088 denotes mice
T6460 769-775 PR_EXT:000016672 denotes TRIP13
T6461 784-792 GO_EXT:0004872 denotes receptor
T6462 793-797 PR_EXT:000016321 denotes THRB
T6463 801-808 GO:0007126 denotes meiosis
R4002 T6444 T6443 _lexicallyChainedTo body,XY
R4003 T6444 T6445 _lexicallyChainedTo body,sex